Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003355

Physical Location & Seq

Genomic Coordinates Reverse (-)

25253813 .. 25255244

Gene Structure 1432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G225800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGGAGATCTTCATGACAATGTCTCTTCTCACTCTTTTCTTTGGTTTCTTCTGCCTCTGCAAGTTACTTCTCCAAAGGAGAGACCAGAGCTGCTATATGCTGGCTTATGAGTGCTACAAGGCCAAAGAGGACATGAAGCTCAACTGTGATTCCAGCGCAAAAATCGTCATGCAGAACAAGAATTTGGGATTGGAAGAACTCAGGTTTCTCTTGAAAACTATTGTCAGTTCTGGCATTGGTGAAGAAACATCTTGCCCACGAAACATCATTGAAGGCCGAAATCCAACCCGGGCAGATGAGCTTTGTGAGATGGATGGTATCATATTTGACACACTTGACAAGCTTTTTGCCAGGCCTACTTCAATTTCTCCATCACAAATCGACATTCTGGTTGTCAATGTGTCAATGTTCTCCCCTGCACCCTCTCTAACATCTCGTATAATAAATCGTTACAAGATGAGGGAGGACATCAAGACCTTCAACCTCTCAGGAATGGGATGCAGTGCAAGTCTCATTGCTATTGATGTTGTACAAAACTTGTTCAAGTCATACAAAAACGCAAATGCAATTGTTGTAAGCACAGAATCCATAGCTCCTAACTGGTACTGTGGCAAAGAAAAGTCCATGATGCTCACCAACTGTCTGTTCCGCTCGGGAGGGTGTTCGATGCTGTTCACAAACAACAAAGGCCTAAAGCACCAAGCCATGTTGAAGTTAAGGCATTTGGTACGAACCCACATTGGCTCAAGTGATGAAGCGTATGATTGCTGCATACAGGCAGAAGATGAGAGTGGATATCAAGGTTTTCGCCTTACCAAACACCTCACAAAAGCAGCAGCTCTGGCTTTTACAATGAACCTCCAAGTTCTAGTACCAAAAGTGCTTCCACTGAGAGAAATACTTAGGTACCTGGCGGTATCTAGGCTTAAAAGTGCCAAAAGCCAAAAGCCAAAAGCAGATGAGGGAGTTGGGTTGAATCTTAAGACCGGGATTGAGCACTTTTGCATTCACCCTGGTGGAAGAGCAATCATAGATGGGATTGGTAAGAGCTTGGGGCTAAGTGATTATGATGTTGAGCCATCTAGAATGGCACTTCACAGGTTTGGCAACACATCAGCAGCTGGCTTTTGGTATGCTTTGGGATATATGGAGGCCAAGCAGAGGCTTAAGAAGGGCAACAGAATTCTGATGAGTGGATTTGGAGCAGGTTTTAAGTGCAACAATATTGTGTGGGAAGTGCTCAAGGACTTGGGTGATGCCAATGTTTGGAAAGATTGCATAGAGAGTTACCCTCCTAAAACCTTAGTCAATCCATTCATGGAGAAGTATGGTTGGCTCAATGATGAATATCTAAGCTTTCTTAGGTTTGATTTTTCCCAATTATTTGCTGAACTTCAGCTGTTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

470

Amino Acids

52.83

Weight (kDa)

8.7

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04530
fragaria_vesca	FvH4_7g20910 FvH4_7g20910 FvH4_7g20910
malus_domestica	MD01G1118800.v1.1 MD01G1119200.v1.1 MD07G1187000.v1.1 MD07G1187300.v1.1 MD07G1187400.v1.1 MD07G1187800.v1.1
prunus_persica	Prupe.2G103600_v2.0.a1 Prupe.2G103700_v2.0.a1 Prupe.2G225800_v2.0.a1 Prupe.2G225900_v2.0.a1
pyrus_communis	pycom01g14580
rosa_chinensis	RchiOBHm_Chr1g0364911 RchiOBHm_Chr1g0365221 RchiOBHm_Chr1g0365281
rosa_laevigata	RLG00000027434 RLG00000027437 RLG00000027460
rosa_multiflora	Rmu_sc0004695.1_g000003 Rmu_sc0004695.1_g000005 Rmu_sc0008035.1_g000016
rosa_roxburghii	Rroxscaffold_4G00291360 Rroxscaffold_4G00291900
rosa_rugosa	Rorug01G0111400 Rorug01G0320400
rosa_samantha	Rh1AG329400 Rh1AG329600 Rh1BG102500 Rh1BG290800 Rh1BG291000 Rh1CG307700 Rh1DG322500
rosa_wichuraiana	Rw1G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1196
Acc65I	GGTACC	1 cut(s)	906
AccB1I	GGYRCC	1 cut(s)	906
AccB7I	CCANNNNNTGG	1 cut(s)	1266
AccBSI	CCGCTC	1 cut(s)	651
AciI	CCGC	2 cut(s)	649, 914
AcsI	RAATTY	2 cut(s)	181, 1182
AcuI	CTGAAG	1 cut(s)	1379
AfaI	GTAC	5 cut(s)	531, 605, 729, 873, 908
AfiI	CCNNNNNNNGG	2 cut(s)	1161, 1266
AflII	CTTAAG	2 cut(s)	980, 1166
AgsI	TTSAA	7 cut(s)	214, 272, 363, 481, 544, 712, 976
AjnI	CCWGG	3 cut(s)	350, 909, 1012
AjuI	GAANNNNNNNTTGG	6 cut(s)	167, 173, 199, 205, 629, 661
AleI	CACNNNNGTG	1 cut(s)	1014
Alw21I	GWGCWC	2 cut(s)	999, 1242
Alw26I	GTCTC	3 cut(s)	27, 75, 515
AlwNI	CAGNNNCTG	1 cut(s)	1121
Ama87I	CYCGRG	2 cut(s)	288, 652
AoxI	GGCC	5 cut(s)	120, 274, 353, 688, 1152
ApeKI	GCWGC	5 cut(s)	90, 768, 833, 836, 1118
ApoI	RAATTY	2 cut(s)	181, 1182
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
Asp718I	GGTACC	1 cut(s)	906
AspLEI	GCGC	1 cut(s)	158
AsuC2I	CCSGG	3 cut(s)	289, 290, 988
AsuHPI	GGTGA	4 cut(s)	251, 625, 1001, 1265
AvaI	CYCGRG	2 cut(s)	288, 652
BaeI	ACNNNNGTAYC	2 cut(s)	890, 923
BanI	GGYRCC	1 cut(s)	906
Bbv12I	GWGCWC	2 cut(s)	999, 1242
BbvI	GCAGC	5 cut(s)	77, 755, 845, 848, 1130
BccI	CCATC	5 cut(s)	304, 308, 379, 1028, 1087
BciT130I	CCWGG	3 cut(s)	352, 911, 1014
BcnI	CCSGG	3 cut(s)	289, 290, 988
BcoDI	GTCTC	3 cut(s)	27, 75, 515
BfaI	CTAG	3 cut(s)	869, 921, 1083
BfrI	CTTAAG	2 cut(s)	980, 1166
BfuAI	ACCTGC	1 cut(s)	1196
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	5 cut(s)	91, 769, 834, 837, 1119
BlsI	GCNGC	5 cut(s)	92, 770, 835, 838, 1120
Bme1390I	CCNGG	6 cut(s)	289, 290, 352, 911, 988, 1014
BmeT110I	CYCGRG	2 cut(s)	288, 652
BmiI	GGNNCC	1 cut(s)	908
BmrFI	CCNGG	6 cut(s)	289, 290, 352, 911, 988, 1014
BmsI	GCATC	4 cut(s)	488, 618, 657, 1246
BplI	GAGNNNNNCTC	2 cut(s)	1276, 1308
BpuEI	CTTGAG	2 cut(s)	730, 1226
BpuMI	CCSGG	3 cut(s)	289, 290, 988
BsaBI	GATNNNNATC	1 cut(s)	1347
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	288, 1012
Bsc4I	CCNNNNNNNGG	2 cut(s)	1161, 1266
Bse1I	ACTGG	1 cut(s)	605
Bse3DI	GCAATG	1 cut(s)	513
Bse8I	GATNNNNATC	1 cut(s)	1347
BseBI	CCWGG	3 cut(s)	352, 911, 1014
BseDI	CCNNGG	2 cut(s)	288, 1012
BseGI	GGATG	2 cut(s)	319, 503
BseJI	GATNNNNATC	1 cut(s)	1347
BseLI	CCNNNNNNNGG	2 cut(s)	1161, 1266
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	3 cut(s)	214, 501, 881
BseNI	ACTGG	1 cut(s)	605
BseXI	GCAGC	5 cut(s)	77, 755, 845, 848, 1130
BsgI	GTGCAG	1 cut(s)	402
BshFI	GGCC	5 cut(s)	122, 276, 355, 690, 1154
BshNI	GGYRCC	1 cut(s)	906
BsiHKAI	GWGCWC	2 cut(s)	999, 1242
BsiHKCI	CYCGRG	2 cut(s)	288, 652
BsiSI	CCGG	2 cut(s)	289, 987
BslI	CCNNNNNNNGG	2 cut(s)	1161, 1266
BsmAI	GTCTC	3 cut(s)	27, 75, 515
BsmI	GAATGC	1 cut(s)	1005
BsnI	GGCC	5 cut(s)	122, 276, 355, 690, 1154
Bso31I	GGTCTC	1 cut(s)	75
BsoBI	CYCGRG	2 cut(s)	288, 652
Bsp1286I	GDGCHC	2 cut(s)	999, 1242
Bsp1407I	TGTACA	1 cut(s)	529
Bsp143I	GATC	1 cut(s)	6
BspACI	CCGC	2 cut(s)	649, 914
BspANI	GGCC	5 cut(s)	122, 276, 355, 690, 1154
BspCNI	CTCAG	3 cut(s)	213, 500, 882
BspHI	TCATGA	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	908
BspMI	ACCTGC	1 cut(s)	1196
BspQI	GCTCTTC	1 cut(s)	1015
BspT107I	GGYRCC	1 cut(s)	906
BspTI	CTTAAG	2 cut(s)	980, 1166
BspTNI	GGTCTC	1 cut(s)	75
BsrBI	CCGCTC	1 cut(s)	651
BsrDI	GCAATG	1 cut(s)	513
BsrGI	TGTACA	1 cut(s)	529
BsrI	ACTGG	1 cut(s)	605
BssECI	CCNNGG	2 cut(s)	288, 1012
BssMI	GATC	1 cut(s)	6
Bst2UI	CCWGG	3 cut(s)	352, 911, 1014
Bst4CI	ACNGT	3 cut(s)	146, 608, 641
Bst6I	CTCTTC	2 cut(s)	30, 1015
BstAFI	CTTAAG	2 cut(s)	980, 1166
BstAUI	TGTACA	1 cut(s)	529
BstC8I	GCNNGC	2 cut(s)	102, 1123
BstDEI	CTNAG	8 cut(s)	200, 487, 890, 902, 1058, 1303, 1352, 1361
BstF5I	GGATG	2 cut(s)	319, 503
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	1 cut(s)	9
BstMAI	GTCTC	3 cut(s)	27, 75, 515
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	1 cut(s)	842
BstNI	CCWGG	3 cut(s)	352, 911, 1014
BstSCI	CCNGG	6 cut(s)	287, 288, 350, 909, 986, 1012
BstV1I	GCAGC	5 cut(s)	77, 755, 845, 848, 1130
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BsuRI	GGCC	5 cut(s)	122, 276, 355, 690, 1154
BtsCI	GGATG	2 cut(s)	319, 503
BtsI	GCAGTG	1 cut(s)	508
BtsIMutI	CAGTG	2 cut(s)	508, 887
BveI	ACCTGC	1 cut(s)	1196
Cac8I	GCNNGC	2 cut(s)	102, 1123
CaiI	CAGNNNCTG	1 cut(s)	1121
CciI	TCATGA	1 cut(s)	12
CfoI	GCGC	1 cut(s)	158
Cfr9I	CCCGGG	1 cut(s)	288
Csp6I	GTAC	5 cut(s)	530, 604, 728, 872, 907
CviAII	CATG	6 cut(s)	13, 133, 169, 625, 706, 1318
CviQI	GTAC	5 cut(s)	530, 604, 728, 872, 907
DdeI	CTNAG	8 cut(s)	200, 487, 890, 902, 1058, 1303, 1352, 1361
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	30, 1015
EarI	CTCTTC	2 cut(s)	30, 1015
Eco147I	AGGCCT	2 cut(s)	355, 690
Eco31I	GGTCTC	1 cut(s)	75
Eco32I	GATATC	1 cut(s)	797
Eco57I	CTGAAG	1 cut(s)	1379
Eco88I	CYCGRG	2 cut(s)	288, 652
EcoRI	GAATTC	1 cut(s)	1182
EcoRII	CCWGG	3 cut(s)	350, 909, 1012
EcoRV	GATATC	1 cut(s)	797
FaeI	CATG	6 cut(s)	16, 136, 172, 628, 709, 1321
FatI	CATG	6 cut(s)	12, 132, 168, 624, 705, 1317
Fnu4HI	GCNGC	5 cut(s)	91, 769, 834, 837, 1119
FokI	GGATG	2 cut(s)	326, 510
Fsp4HI	GCNGC	5 cut(s)	91, 769, 834, 837, 1119
FspBI	CTAG	3 cut(s)	869, 921, 1083
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	5 cut(s)	91, 769, 834, 837, 1119
HaeIII	GGCC	5 cut(s)	122, 276, 355, 690, 1154
HapII	CCGG	2 cut(s)	289, 987
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	6 cut(s)	16, 136, 172, 628, 709, 1321
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HindIII	AAGCTT	2 cut(s)	341, 1354
HinfI	GANTC	3 cut(s)	149, 584, 976
HpaII	CCGG	2 cut(s)	289, 987
HphI	GGTGA	4 cut(s)	251, 625, 1001, 1265
Hpy166II	GTNNAC	1 cut(s)	675
Hpy188I	TCNGA	1 cut(s)	1188
Hpy188III	TCNNGA	6 cut(s)	13, 211, 472, 489, 654, 1083
Hpy8I	GTNNAC	1 cut(s)	675
HpyAV	CCTTC	3 cut(s)	266, 487, 1165
HpyCH4III	ACNGT	3 cut(s)	146, 608, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	842
HpyF3I	CTNAG	8 cut(s)	200, 487, 890, 902, 1058, 1303, 1352, 1361
Hsp92II	CATG	6 cut(s)	16, 136, 172, 628, 709, 1321
HspAI	GCGC	1 cut(s)	156
KpnI	GGTACC	1 cut(s)	910
Kzo9I	GATC	1 cut(s)	6
LguI	GCTCTTC	1 cut(s)	1015
LmnI	GCTCC	2 cut(s)	598, 1202
Lsp1109I	GCAGC	5 cut(s)	77, 755, 845, 848, 1130
LweI	GCATC	4 cut(s)	488, 618, 657, 1246
MaeI	CTAG	3 cut(s)	869, 921, 1083
MaeIII	GTNAC	3 cut(s)	63, 449, 1286
MalI	GATC	1 cut(s)	8
MbiI	CCGCTC	1 cut(s)	651
MboI	GATC	1 cut(s)	6
MboII	GAAGA	6 cut(s)	17, 40, 206, 254, 794, 1032
MfeI	CAATTG	1 cut(s)	567
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	2 cut(s)	999, 1242
MluCI	AATT	5 cut(s)	181, 363, 567, 1182, 1379
MmeI	TCCRAC	1 cut(s)	308
MseI	TTAA	6 cut(s)	716, 927, 981, 1167, 1212, 1408
MslI	CAYNNNNRTG	2 cut(s)	17, 1014
MspA1I	CMGCKG	2 cut(s)	1121, 1399
MspCI	CTTAAG	2 cut(s)	980, 1166
MspI	CCGG	2 cut(s)	289, 987
MspR9I	CCNGG	6 cut(s)	289, 290, 352, 911, 988, 1014
MunI	CAATTG	1 cut(s)	567
Mva1269I	GAATGC	1 cut(s)	1005
MvaI	CCWGG	3 cut(s)	352, 911, 1014
MwoI	GCNNNNNNNGC	1 cut(s)	842
NciI	CCSGG	3 cut(s)	289, 290, 988
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	6 cut(s)	16, 136, 172, 628, 709, 1321
NlaIV	GGNNCC	1 cut(s)	908
OliI	CACNNNNGTG	1 cut(s)	1014
PagI	TCATGA	1 cut(s)	12
PceI	AGGCCT	2 cut(s)	355, 690
PciSI	GCTCTTC	1 cut(s)	1015
PctI	GAATGC	1 cut(s)	1005
PfeI	GAWTC	3 cut(s)	149, 584, 976
PflFI	GACNNNGTC	1 cut(s)	19
PflMI	CCANNNNNTGG	1 cut(s)	1266
PkrI	GCNGC	5 cut(s)	92, 770, 835, 838, 1120
Psp6I	CCWGG	3 cut(s)	350, 909, 1012
PspGI	CCWGG	3 cut(s)	350, 909, 1012
PspN4I	GGNNCC	1 cut(s)	908
PstNI	CAGNNNCTG	1 cut(s)	1121
PsuI	RGATCY	1 cut(s)	6
PsyI	GACNNNGTC	1 cut(s)	19
PvuII	CAGCTG	2 cut(s)	1121, 1399
RsaI	GTAC	5 cut(s)	531, 605, 729, 873, 908
RsaNI	GTAC	5 cut(s)	530, 604, 728, 872, 907
RseI	CAYNNNNRTG	2 cut(s)	17, 1014
SapI	GCTCTTC	1 cut(s)	1015
SaqAI	TTAA	6 cut(s)	716, 927, 981, 1167, 1212, 1408
SatI	GCNGC	5 cut(s)	91, 769, 834, 837, 1119
Sau3AI	GATC	1 cut(s)	6
ScrFI	CCNGG	6 cut(s)	289, 290, 352, 911, 988, 1014
SduI	GDGCHC	2 cut(s)	999, 1242
SfaNI	GCATC	4 cut(s)	488, 618, 657, 1246
SmaI	CCCGGG	1 cut(s)	290
SmiMI	CAYNNNNRTG	2 cut(s)	17, 1014
SmlI	CTYRAG	4 cut(s)	745, 980, 1166, 1241
SmoI	CTYRAG	4 cut(s)	745, 980, 1166, 1241
Sse9I	AATT	5 cut(s)	181, 363, 567, 1182, 1379
SseBI	AGGCCT	2 cut(s)	355, 690
SsiI	CCGC	2 cut(s)	649, 914
SspI	AATATT	1 cut(s)	1225
SspMI	CTAG	3 cut(s)	869, 921, 1083
StuI	AGGCCT	2 cut(s)	355, 690
StyD4I	CCNGG	6 cut(s)	287, 288, 350, 909, 986, 1012
TaaI	ACNGT	3 cut(s)	146, 608, 641
TaqI	TCGA	2 cut(s)	381, 665
TasI	AATT	5 cut(s)	181, 363, 567, 1182, 1379
TatI	WGTACW	1 cut(s)	529
TfiI	GAWTC	3 cut(s)	149, 584, 976
Tru1I	TTAA	6 cut(s)	716, 927, 981, 1167, 1212, 1408
Tru9I	TTAA	6 cut(s)	716, 927, 981, 1167, 1212, 1408
TscAI	CASTG	2 cut(s)	508, 894
TseI	GCWGC	5 cut(s)	90, 768, 833, 836, 1118
TspDTI	ATGAA	5 cut(s)	149, 768, 869, 1306, 1359
TspMI	CCCGGG	1 cut(s)	288
TspRI	CASTG	2 cut(s)	508, 894
Tth111I	GACNNNGTC	1 cut(s)	19
Van91I	CCANNNNNTGG	1 cut(s)	1266
Vha464I	CTTAAG	2 cut(s)	980, 1166
XapI	RAATTY	2 cut(s)	181, 1182
XbaI	TCTAGA	1 cut(s)	1082
XmaI	CCCGGG	1 cut(s)	288
XspI	CTAG	3 cut(s)	869, 921, 1083

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.