Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003355

Physical Location & Seq

Genomic Coordinates Reverse (-)

16022524 .. 16023921

Gene Structure 1398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G103700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGGAGCTCTTGATGGTGACGTGTTTGCTTGCTCTTTTCTATGGTCTCTCCTGCCTCCATAAGATAATTCTGCGTATGAGAGACCAGGCCTGCTACCTGCTGGCCTATGAGTGCTACATGCCCACCGATGACATGATGATCAGCACTGATTCTTGTGTCAAAATAGTCACACGAAACAAGAATCTAGGGTTGGAGGAGTTCAGGTTTCTCTTGAAAACAATTGTCAATTCTGGCATCGGTGAGGAAACTTATTGCCCAAAAAACATCATTGAAGGCCGAGAAGATGATGCAACCCTAGTAGATGAGCTTTTGGAGATGGAAGAAGTCATCTTCGACACACTGGACAAGCTTTTTGCTAAGTTTAGTGCAATTTCTCCATCACAAATTGACATTCTTGTGGTCAATGTGTCCATGTTCAGCCCTGCACCCTCTCTAACATCCCGTATAGTAAACCGCTACAAGATGAGGGAGGACATCAAGACCTTCAACCTCTCAGGAATGGGCTGTAGTGCAAGCCTAATTGCCATTGATGTTGTGAAAAACCTATTCAAGTCGTACAAGAACGTGAACGCCATTGTTGTAAGCACAGAATCCATATCTCCTCATTGGTACTGCGGTAAAGAAAAATCCATGATGCTCACAAACTGTCTGTTTCGCTCGGGAGGGTGTTCGATGTTGTTCACAAACAACAGAGACCTAAAGCACCAAGCCAAGTTGAAACTAAATCATTTGGTGAGAATACATACTGGCTCAAGTGATGAAGCGTATAACTGTTGTATACAGGTGGAAGATGAAAGTGGATATAAAGGTTTCCGCCTTACCAAATACCTTGTAAAAGCAGCAAGTCAGGGATTTACAATGAACCTCCAAGTTCTATTACCAAAAGTGCTTCCACTGAGAGAAATACTTAGGTACCTGGTGGTATCTAAGCTTAAAAGTGCCAAAAGCCAAAAGCTAAAAGCAGATGAGCGAGTTGGGTTGAATCTTAAGACCGGGATTGAGCACTTTTGCATTCACCCTGGTGGAAGAGCAGTCATAGATGGGATTGGTAAGAGCTTGGGGCTAAGTGATTATGATGTTGAGCCATCTAGAATGGCACTTCACAGGTTTGGGAACACATCAGCTGCTGGGTTTTGGTATGCTTTGGGATACATGGAGGCTAAGAAGAGGCTCAAGAAGGGTAACAAAATTCTGATGAGTGGATTTGGAGCAGGTTTTAAGTGCAACAATATTGTGTGGGAAGTGCTGAAGGACTTGGATGATGCAAATGTTTGGAAAGACTGCATAGACAGCTACCCTCCTAATACCCTAGTCAATCCATTCATGGAGAAGTACAGTTGGATCGATGATGAAATTCTAAACTTTGTTAGGTTTGATTTTTCTCTATTAGCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

466

Amino Acids

52.55

Weight (kDa)

8.23

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04530
fragaria_vesca	FvH4_7g20910 FvH4_7g20910 FvH4_7g20910
malus_domestica	MD01G1118800.v1.1 MD01G1119200.v1.1 MD07G1187000.v1.1 MD07G1187300.v1.1 MD07G1187400.v1.1 MD07G1187800.v1.1
prunus_persica	Prupe.2G103600_v2.0.a1 Prupe.2G103700_v2.0.a1 Prupe.2G225800_v2.0.a1 Prupe.2G225900_v2.0.a1
pyrus_communis	pycom01g14580
rosa_chinensis	RchiOBHm_Chr1g0364911 RchiOBHm_Chr1g0365221 RchiOBHm_Chr1g0365281
rosa_laevigata	RLG00000027434 RLG00000027437 RLG00000027460
rosa_multiflora	Rmu_sc0004695.1_g000003 Rmu_sc0004695.1_g000005 Rmu_sc0008035.1_g000016
rosa_roxburghii	Rroxscaffold_4G00291360 Rroxscaffold_4G00291900
rosa_rugosa	Rorug01G0111400 Rorug01G0320400
rosa_samantha	Rh1AG329400 Rh1AG329600 Rh1BG102500 Rh1BG290800 Rh1BG291000 Rh1CG307700 Rh1DG322500
rosa_wichuraiana	Rw1G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	105, 1202
Acc65I	GGTACC	1 cut(s)	912
AccB1I	GGYRCC	1 cut(s)	912
AccI	GTMKAC	1 cut(s)	778
AciI	CCGC	3 cut(s)	454, 615, 814
AclWI	GGATC	1 cut(s)	1349
AcsI	RAATTY	2 cut(s)	1188, 1353
AcuI	CTGAAG	1 cut(s)	1268
AfaI	GTAC	4 cut(s)	557, 611, 914, 1334
AflII	CTTAAG	1 cut(s)	986
AflIII	ACRYGT	1 cut(s)	20
AgsI	TTSAA	6 cut(s)	214, 272, 487, 550, 718, 982
AjiI	CACGTC	1 cut(s)	21
AjnI	CCWGG	3 cut(s)	84, 915, 1018
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AleI	CACNNNNGTG	1 cut(s)	1020
AluBI	AGCT	9 cut(s)	7, 307, 349, 931, 955, 1056, 1124, 1293, 1391
AluI	AGCT	9 cut(s)	7, 307, 349, 931, 955, 1056, 1124, 1293, 1391
Alw21I	GWGCWC	2 cut(s)	9, 1005
Alw26I	GTCTC	3 cut(s)	50, 75, 687
AlwI	GGATC	1 cut(s)	1349
AlwNI	CAGNNNCTG	1 cut(s)	1127
Ama87I	CYCGRG	1 cut(s)	658
AoxI	GGCC	3 cut(s)	87, 102, 274
ApeKI	GCWGC	2 cut(s)	839, 1124
ApoI	RAATTY	2 cut(s)	1188, 1353
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
Asp718I	GGTACC	1 cut(s)	912
AsuC2I	CCSGG	1 cut(s)	994
AsuHPI	GGTGA	4 cut(s)	28, 251, 745, 1007
AvaI	CYCGRG	1 cut(s)	658
BaeI	ACNNNNGTAYC	4 cut(s)	601, 634, 896, 929
BanI	GGYRCC	1 cut(s)	912
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	2 cut(s)	9, 1005
BbvI	GCAGC	2 cut(s)	851, 1111
BccI	CCATC	5 cut(s)	7, 310, 385, 1034, 1093
BciT130I	CCWGG	3 cut(s)	86, 917, 1020
BciVI	GTATCC	1 cut(s)	1142
BclI	TGATCA	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	994
BcoDI	GTCTC	3 cut(s)	50, 75, 687
BfaI	CTAG	4 cut(s)	185, 296, 1089, 1310
BfmI	CTRYAG	1 cut(s)	505
BfrI	CTTAAG	1 cut(s)	986
BfuAI	ACCTGC	2 cut(s)	105, 1202
BfuI	GTATCC	1 cut(s)	1142
BisI	GCNGC	2 cut(s)	840, 1125
BlsI	GCNGC	2 cut(s)	841, 1126
Bme1390I	CCNGG	4 cut(s)	86, 917, 994, 1020
BmeT110I	CYCGRG	1 cut(s)	658
BmgBI	CACGTC	1 cut(s)	21
BmiI	GGNNCC	1 cut(s)	914
BmrFI	CCNGG	4 cut(s)	86, 917, 994, 1020
BmsI	GCATC	4 cut(s)	243, 277, 624, 1252
BpuEI	CTTGAG	2 cut(s)	736, 1157
BpuMI	CCSGG	1 cut(s)	994
Bsa29I	ATCGAT	1 cut(s)	1344
BsaI	GGTCTC	3 cut(s)	50, 75, 687
BsaJI	CCNNGG	1 cut(s)	1018
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bse1I	ACTGG	2 cut(s)	345, 751
BseBI	CCWGG	3 cut(s)	86, 917, 1020
BseCI	ATCGAT	1 cut(s)	1344
BseDI	CCNNGG	1 cut(s)	1018
BseGI	GGATG	2 cut(s)	437, 1264
BseMII	CTCAG	2 cut(s)	507, 887
BseNI	ACTGG	2 cut(s)	345, 751
BseRI	GAGGAG	2 cut(s)	209, 591
BseXI	GCAGC	2 cut(s)	851, 1111
BseYI	CCCAGC	1 cut(s)	1127
BsgI	GTGCAG	1 cut(s)	408
BshFI	GGCC	3 cut(s)	89, 104, 276
BshNI	GGYRCC	1 cut(s)	912
BshVI	ATCGAT	1 cut(s)	1344
BsiHKAI	GWGCWC	2 cut(s)	9, 1005
BsiHKCI	CYCGRG	1 cut(s)	658
BsiSI	CCGG	1 cut(s)	993
BsmAI	GTCTC	3 cut(s)	50, 75, 687
BsmI	GAATGC	1 cut(s)	1011
BsnI	GGCC	3 cut(s)	89, 104, 276
Bso31I	GGTCTC	3 cut(s)	50, 75, 687
BsoBI	CYCGRG	1 cut(s)	658
Bsp1286I	GDGCHC	2 cut(s)	9, 1005
Bsp143I	GATC	2 cut(s)	138, 1341
BspACI	CCGC	3 cut(s)	454, 615, 814
BspANI	GGCC	3 cut(s)	89, 104, 276
BspCNI	CTCAG	2 cut(s)	506, 888
BspDI	ATCGAT	1 cut(s)	1344
BspLI	GGNNCC	1 cut(s)	914
BspMI	ACCTGC	2 cut(s)	105, 1202
BspPI	GGATC	1 cut(s)	1349
BspQI	GCTCTTC	1 cut(s)	1021
BspT107I	GGYRCC	1 cut(s)	912
BspTI	CTTAAG	1 cut(s)	986
BspTNI	GGTCTC	3 cut(s)	50, 75, 687
BsrI	ACTGG	2 cut(s)	345, 751
BssECI	CCNNGG	1 cut(s)	1018
BssMI	GATC	2 cut(s)	138, 1341
BssNAI	GTATAC	1 cut(s)	779
Bst1107I	GTATAC	1 cut(s)	779
Bst2UI	CCWGG	3 cut(s)	86, 917, 1020
Bst4CI	ACNGT	3 cut(s)	647, 773, 1337
Bst6I	CTCTTC	2 cut(s)	1021, 1160
BstAFI	CTTAAG	1 cut(s)	986
BstC8I	GCNNGC	4 cut(s)	30, 91, 102, 514
BstDEI	CTNAG	7 cut(s)	357, 493, 896, 908, 927, 1064, 1161
BstF5I	GGATG	2 cut(s)	437, 1264
BstKTI	GATC	2 cut(s)	141, 1344
BstMAI	GTCTC	3 cut(s)	50, 75, 687
BstMBI	GATC	2 cut(s)	138, 1341
BstMWI	GCNNNNNNNGC	1 cut(s)	1290
BstNI	CCWGG	3 cut(s)	86, 917, 1020
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	4 cut(s)	84, 915, 992, 1018
BstSFI	CTRYAG	1 cut(s)	505
BstV1I	GCAGC	2 cut(s)	851, 1111
BstZ17I	GTATAC	1 cut(s)	779
Bsu15I	ATCGAT	1 cut(s)	1344
BsuI	GTATCC	1 cut(s)	1142
BsuRI	GGCC	3 cut(s)	89, 104, 276
BsuTUI	ATCGAT	1 cut(s)	1344
BtrI	CACGTC	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	437, 1264
BtsIMutI	CAGTG	3 cut(s)	144, 338, 893
BveI	ACCTGC	2 cut(s)	105, 1202
Cac8I	GCNNGC	4 cut(s)	30, 91, 102, 514
CaiI	CAGNNNCTG	1 cut(s)	1127
ClaI	ATCGAT	1 cut(s)	1344
CsiI	ACCWGGT	1 cut(s)	915
Csp6I	GTAC	4 cut(s)	556, 610, 913, 1333
CviAII	CATG	6 cut(s)	118, 133, 412, 631, 1153, 1324
CviQI	GTAC	4 cut(s)	556, 610, 913, 1333
DdeI	CTNAG	7 cut(s)	357, 493, 896, 908, 927, 1064, 1161
DpnI	GATC	2 cut(s)	140, 1343
DpnII	GATC	2 cut(s)	138, 1341
Eam1104I	CTCTTC	2 cut(s)	1021, 1160
EarI	CTCTTC	2 cut(s)	1021, 1160
EciI	GGCGGA	1 cut(s)	803
Ecl136II	GAGCTC	1 cut(s)	7
Eco147I	AGGCCT	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	3 cut(s)	50, 75, 687
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	1268
Eco88I	CYCGRG	1 cut(s)	658
EcoICRI	GAGCTC	1 cut(s)	7
EcoRII	CCWGG	3 cut(s)	84, 915, 1018
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	6 cut(s)	121, 136, 415, 634, 1156, 1327
FatI	CATG	6 cut(s)	117, 132, 411, 630, 1152, 1323
FbaI	TGATCA	1 cut(s)	138
FblI	GTMKAC	1 cut(s)	778
Fnu4HI	GCNGC	2 cut(s)	840, 1125
FokI	GGATG	2 cut(s)	424, 1271
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	840, 1125
FspBI	CTAG	4 cut(s)	185, 296, 1089, 1310
GluI	GCNGC	2 cut(s)	840, 1125
GsaI	CCCAGC	1 cut(s)	1131
HaeIII	GGCC	3 cut(s)	89, 104, 276
HapII	CCGG	1 cut(s)	993
Hin1II	CATG	6 cut(s)	121, 136, 415, 634, 1156, 1327
HindIII	AAGCTT	2 cut(s)	347, 929
HinfI	GANTC	4 cut(s)	149, 181, 590, 982
HpaII	CCGG	1 cut(s)	993
HphI	GGTGA	4 cut(s)	28, 251, 745, 1007
Hpy166II	GTNNAC	4 cut(s)	451, 568, 681, 779
Hpy188I	TCNGA	1 cut(s)	1194
Hpy188III	TCNNGA	7 cut(s)	10, 211, 478, 495, 660, 1089, 1174
Hpy8I	GTNNAC	4 cut(s)	451, 568, 681, 779
HpyAV	CCTTC	4 cut(s)	266, 493, 1171, 1243
HpyCH4III	ACNGT	3 cut(s)	647, 773, 1337
HpyCH4IV	ACGT	2 cut(s)	20, 564
HpyCH4V	TGCA	8 cut(s)	290, 368, 425, 512, 1011, 1224, 1265, 1284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1290
HpyF3I	CTNAG	7 cut(s)	357, 493, 896, 908, 927, 1064, 1161
HpySE526I	ACGT	2 cut(s)	20, 564
Hsp92II	CATG	6 cut(s)	121, 136, 415, 634, 1156, 1327
KpnI	GGTACC	1 cut(s)	916
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	138, 1341
LguI	GCTCTTC	1 cut(s)	1021
LmnI	GCTCC	2 cut(s)	4, 1208
Lsp1109I	GCAGC	2 cut(s)	851, 1111
LweI	GCATC	4 cut(s)	243, 277, 624, 1252
MabI	ACCWGGT	1 cut(s)	915
MaeI	CTAG	4 cut(s)	185, 296, 1089, 1310
MaeII	ACGT	2 cut(s)	20, 564
MaeIII	GTNAC	3 cut(s)	16, 166, 1181
MalI	GATC	2 cut(s)	140, 1343
MboI	GATC	2 cut(s)	138, 1341
MboII	GAAGA	6 cut(s)	293, 322, 332, 800, 1038, 1177
MfeI	CAATTG	1 cut(s)	219
MhlI	GDGCHC	2 cut(s)	9, 1005
MluCI	AATT	8 cut(s)	66, 219, 226, 369, 384, 519, 1188, 1353
MmeI	TCCRAC	2 cut(s)	171, 1319
MseI	TTAA	4 cut(s)	933, 987, 1218, 1396
MslI	CAYNNNNRTG	2 cut(s)	395, 1020
MspA1I	CMGCKG	1 cut(s)	1124
MspCI	CTTAAG	1 cut(s)	986
MspI	CCGG	1 cut(s)	993
MspR9I	CCNGG	4 cut(s)	86, 917, 994, 1020
MunI	CAATTG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	1011
MvaI	CCWGG	3 cut(s)	86, 917, 1020
MwoI	GCNNNNNNNGC	1 cut(s)	1290
NciI	CCSGG	1 cut(s)	994
NdeII	GATC	2 cut(s)	138, 1341
NlaIII	CATG	6 cut(s)	121, 136, 415, 634, 1156, 1327
NlaIV	GGNNCC	1 cut(s)	914
NmeAIII	GCCGAG	1 cut(s)	302
NmuCI	GTSAC	2 cut(s)	16, 166
NspI	RCATGY	1 cut(s)	121
OliI	CACNNNNGTG	1 cut(s)	1020
PceI	AGGCCT	1 cut(s)	89
PciSI	GCTCTTC	1 cut(s)	1021
PctI	GAATGC	1 cut(s)	1011
PfeI	GAWTC	4 cut(s)	149, 181, 590, 982
PkrI	GCNGC	2 cut(s)	841, 1126
Psp124BI	GAGCTC	1 cut(s)	9
Psp6I	CCWGG	3 cut(s)	84, 915, 1018
PspFI	CCCAGC	1 cut(s)	1127
PspGI	CCWGG	3 cut(s)	84, 915, 1018
PspN4I	GGNNCC	1 cut(s)	914
PstNI	CAGNNNCTG	1 cut(s)	1127
PvuII	CAGCTG	1 cut(s)	1124
RsaI	GTAC	4 cut(s)	557, 611, 914, 1334
RsaNI	GTAC	4 cut(s)	556, 610, 913, 1333
RseI	CAYNNNNRTG	2 cut(s)	395, 1020
SacI	GAGCTC	1 cut(s)	9
SapI	GCTCTTC	1 cut(s)	1021
SaqAI	TTAA	4 cut(s)	933, 987, 1218, 1396
SatI	GCNGC	2 cut(s)	840, 1125
Sau3AI	GATC	2 cut(s)	138, 1341
ScrFI	CCNGG	4 cut(s)	86, 917, 994, 1020
SduI	GDGCHC	2 cut(s)	9, 1005
SexAI	ACCWGGT	1 cut(s)	915
SfaNI	GCATC	4 cut(s)	243, 277, 624, 1252
SfcI	CTRYAG	1 cut(s)	505
SmiMI	CAYNNNNRTG	2 cut(s)	395, 1020
SmlI	CTYRAG	3 cut(s)	751, 986, 1172
SmoI	CTYRAG	3 cut(s)	751, 986, 1172
Sse9I	AATT	8 cut(s)	66, 219, 226, 369, 384, 519, 1188, 1353
SseBI	AGGCCT	1 cut(s)	89
SsiI	CCGC	3 cut(s)	454, 615, 814
SspI	AATATT	1 cut(s)	1231
SspMI	CTAG	4 cut(s)	185, 296, 1089, 1310
SstI	GAGCTC	1 cut(s)	9
StuI	AGGCCT	1 cut(s)	89
StyD4I	CCNGG	4 cut(s)	84, 915, 992, 1018
TaaI	ACNGT	3 cut(s)	647, 773, 1337
TaiI	ACGT	2 cut(s)	23, 567
TaqI	TCGA	3 cut(s)	333, 671, 1344
TasI	AATT	8 cut(s)	66, 219, 226, 369, 384, 519, 1188, 1353
TatI	WGTACW	1 cut(s)	1332
TfiI	GAWTC	4 cut(s)	149, 181, 590, 982
Tru1I	TTAA	4 cut(s)	933, 987, 1218, 1396
Tru9I	TTAA	4 cut(s)	933, 987, 1218, 1396
TscAI	CASTG	3 cut(s)	151, 345, 900
TseFI	GTSAC	2 cut(s)	16, 166
TseI	GCWGC	2 cut(s)	839, 1124
Tsp45I	GTSAC	2 cut(s)	16, 166
TspDTI	ATGAA	5 cut(s)	774, 807, 875, 1312, 1365
TspRI	CASTG	3 cut(s)	151, 345, 900
Vha464I	CTTAAG	1 cut(s)	986
XapI	RAATTY	2 cut(s)	1188, 1353
XbaI	TCTAGA	1 cut(s)	1088
XceI	RCATGY	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	778
XspI	CTAG	4 cut(s)	185, 296, 1089, 1310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.