Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008035.1

Orthogroup ID

OG0003355

Physical Location & Seq

Genomic Coordinates Reverse (-)

40672 .. 41901

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008035.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

atgcaaaacaagaatctggggctggaagatttcaggttcctcttgaaaaccattgtcaattccggcattggtgaggaaacatcctgcccaagaaacatcctccaaggccgagaagcaaccctagcagattcactctctgagatggatgaaaccattttcgatacacttgacaaccttttcgccaggtacccttcagtctccccatcacaaatcgacattctcgtggtcaatgtctccatgttctccccttcaccctccctgacatctcgaatagtgaaccgttacaagatgagggaggacatcaagacattcaacctctccggaatgggctgcagtgcaagcctagtggccgttgatgttgtccagggcttgttcaagtcatacgaagactcatacgcccttgttgtgagcacagagtccatggctcctttctggtattgcggcagagaaaaatccatgatgcttaccaactgtttgtttcggttaggaggctgttcgatgctgttcaccaacagaagataccttaagcaccaagctatcttgaaattgaagactttggtaagaacacatatcggctcgaatgatgatgcttacaattcttgcatacagctagaagatgatagtggttacctaggttttcggcttaccaaatacctcacaaaagcagcagctcttgctctcacaataaacctacaagttctagtgccaaaagtacttccactaagggaaatactccggtacttggtggagtctaggctgcggaagaaaagtggtaccaagagccaaaacctagaagtagttggagttggtttgaatatgaaggccggaatagagcacttttgtatccaccctggtggaagagcaatcatagatgggattggcaagagcttagcattaagcgagtatgatctcgagccgtctagaatggcgcttttccgatttggtaacacatcagctgctgggttttggtatgctttaggatacatggaagccaaaaagagactcaagaagggtgataggattcttatgagtggatttggagcaggttttaagtgcaacaatattgtttgggaagtactgagggacttggatgatgccaatgtttgggaaagctgcatagatagttaccctccacatattataggcaaccctttcatggaaaagtatagttggcttaatgatgaatgcctcaactttgttaggattgatttcagcaaaatactcgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

409

Amino Acids

45.97

Weight (kDa)

8.42

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04530
fragaria_vesca	FvH4_7g20910 FvH4_7g20910 FvH4_7g20910
malus_domestica	MD01G1118800.v1.1 MD01G1119200.v1.1 MD07G1187000.v1.1 MD07G1187300.v1.1 MD07G1187400.v1.1 MD07G1187800.v1.1
prunus_persica	Prupe.2G103600_v2.0.a1 Prupe.2G103700_v2.0.a1 Prupe.2G225800_v2.0.a1 Prupe.2G225900_v2.0.a1
pyrus_communis	pycom01g14580
rosa_chinensis	RchiOBHm_Chr1g0364911 RchiOBHm_Chr1g0365221 RchiOBHm_Chr1g0365281
rosa_laevigata	RLG00000027434 RLG00000027437 RLG00000027460
rosa_multiflora	Rmu_sc0004695.1_g000003 Rmu_sc0004695.1_g000005 Rmu_sc0008035.1_g000016
rosa_roxburghii	Rroxscaffold_4G00291360 Rroxscaffold_4G00291900
rosa_rugosa	Rorug01G0111400 Rorug01G0320400
rosa_samantha	Rh1AG329400 Rh1AG329600 Rh1BG102500 Rh1BG290800 Rh1BG291000 Rh1CG307700 Rh1DG322500
rosa_wichuraiana	Rw1G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1034
Acc65I	GGTACC	2 cut(s)	186, 773
AccB1I	GGYRCC	2 cut(s)	186, 773
AccB7I	CCANNNNNTGG	1 cut(s)	1104
AccIII	TCCGGA	1 cut(s)	320
AciI	CCGC	2 cut(s)	441, 760
AcoI	YGGCCR	1 cut(s)	348
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	5 cut(s)	188, 714, 740, 775, 1077
AfiI	CCNNNNNNNGG	3 cut(s)	742, 1104, 1156
AflII	CTTAAG	1 cut(s)	524
AgsI	TTSAA	6 cut(s)	46, 313, 376, 544, 550, 814
AjnI	CCWGG	3 cut(s)	182, 363, 850
AleI	CACNNNNGTG	1 cut(s)	852
AluBI	AGCT	6 cut(s)	536, 610, 671, 888, 956, 1113
AluI	AGCT	6 cut(s)	536, 610, 671, 888, 956, 1113
Alw21I	GWGCWC	2 cut(s)	413, 837
Alw26I	GTCTC	3 cut(s)	202, 238, 994
AlwNI	CAGNNNCTG	1 cut(s)	959
Ama87I	CYCGRG	1 cut(s)	911
Aor13HI	TCCGGA	1 cut(s)	320
AoxI	GGCC	3 cut(s)	106, 348, 822
ApeKI	GCWGC	6 cut(s)	330, 665, 668, 757, 956, 1113
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
Asp718I	GGTACC	2 cut(s)	186, 773
AspA2I	CCTAGG	1 cut(s)	631
AspLEI	GCGC	1 cut(s)	931
AsuHPI	GGTGA	4 cut(s)	83, 243, 499, 1025
AvaI	CYCGRG	1 cut(s)	911
AvrII	CCTAGG	1 cut(s)	631
BaeI	ACNNNNGTAYC	2 cut(s)	826, 859
BanI	GGYRCC	2 cut(s)	186, 773
BauI	CACGAG	1 cut(s)	221
BbsI	GAAGAC	2 cut(s)	393, 557
Bbv12I	GWGCWC	2 cut(s)	413, 837
BbvI	GCAGC	6 cut(s)	317, 677, 680, 744, 943, 1100
BccI	CCATC	3 cut(s)	136, 211, 866
BceAI	ACGGC	2 cut(s)	335, 901
BcgI	CGANNNNNNTGC	1 cut(s)	1204
BciT130I	CCWGG	3 cut(s)	184, 365, 852
BciVI	GTATCC	2 cut(s)	854, 974
BcoDI	GTCTC	3 cut(s)	202, 238, 994
BfaI	CTAG	8 cut(s)	122, 344, 611, 632, 701, 753, 791, 921
BfmI	CTRYAG	1 cut(s)	331
BfoI	RGCGCY	1 cut(s)	932
BfrI	CTTAAG	1 cut(s)	524
BfuAI	ACCTGC	1 cut(s)	1034
BfuI	GTATCC	2 cut(s)	854, 974
BisI	GCNGC	7 cut(s)	331, 442, 666, 669, 758, 957, 1114
BlnI	CCTAGG	1 cut(s)	631
BlpI	GCTNAGC	1 cut(s)	889
BlsI	GCNGC	7 cut(s)	332, 443, 667, 670, 759, 958, 1115
BmcAI	AGTACT	2 cut(s)	714, 1077
Bme1390I	CCNGG	3 cut(s)	184, 365, 852
BmeT110I	CYCGRG	1 cut(s)	911
BmiI	GGNNCC	4 cut(s)	38, 188, 426, 775
BmrFI	CCNGG	3 cut(s)	184, 365, 852
BmsI	GCATC	4 cut(s)	450, 489, 577, 1084
BpiI	GAAGAC	2 cut(s)	393, 557
Bpu1102I	GCTNAGC	1 cut(s)	889
BpuEI	CTTGAG	1 cut(s)	989
BsaJI	CCNNGG	5 cut(s)	103, 364, 420, 631, 850
BsaWI	WCCGGW	2 cut(s)	320, 735
Bsc4I	CCNNNNNNNGG	3 cut(s)	742, 1104, 1156
BseAI	TCCGGA	1 cut(s)	320
BseBI	CCWGG	3 cut(s)	184, 365, 852
BseDI	CCNNGG	5 cut(s)	103, 364, 420, 631, 850
BseGI	GGATG	4 cut(s)	80, 96, 151, 1096
BseLI	CCNNNNNNNGG	3 cut(s)	742, 1104, 1156
BseMII	CTCAG	2 cut(s)	129, 1070
BseXI	GCAGC	6 cut(s)	317, 677, 680, 744, 943, 1100
BseYI	CCCAGC	1 cut(s)	959
BshFI	GGCC	3 cut(s)	108, 350, 824
BshNI	GGYRCC	2 cut(s)	186, 773
BsiHKAI	GWGCWC	2 cut(s)	413, 837
BsiHKCI	CYCGRG	1 cut(s)	911
BsiSI	CCGG	4 cut(s)	63, 321, 736, 825
BslFI	GGGAC	1 cut(s)	1097
BslI	CCNNNNNNNGG	3 cut(s)	742, 1104, 1156
BsmAI	GTCTC	3 cut(s)	202, 238, 994
BsmFI	GGGAC	1 cut(s)	1097
BsmI	GAATGC	1 cut(s)	1190
BsnI	GGCC	3 cut(s)	108, 350, 824
BsoBI	CYCGRG	1 cut(s)	911
Bsp1286I	GDGCHC	2 cut(s)	413, 837
Bsp13I	TCCGGA	1 cut(s)	320
Bsp143I	GATC	1 cut(s)	907
Bsp1720I	GCTNAGC	1 cut(s)	889
Bsp19I	CCATGG	1 cut(s)	420
BspACI	CCGC	2 cut(s)	441, 760
BspANI	GGCC	3 cut(s)	108, 350, 824
BspCNI	CTCAG	2 cut(s)	130, 1071
BspEI	TCCGGA	1 cut(s)	320
BspLI	GGNNCC	4 cut(s)	38, 188, 426, 775
BspMAI	CTGCAG	1 cut(s)	335
BspMI	ACCTGC	1 cut(s)	1034
BspQI	GCTCTTC	1 cut(s)	853
BspT107I	GGYRCC	2 cut(s)	186, 773
BspTI	CTTAAG	1 cut(s)	524
BssECI	CCNNGG	5 cut(s)	103, 364, 420, 631, 850
BssMI	GATC	1 cut(s)	907
BssSI	CACGAG	1 cut(s)	221
BssT1I	CCWWGG	3 cut(s)	103, 420, 631
Bst2BI	CACGAG	1 cut(s)	221
Bst2UI	CCWGG	3 cut(s)	184, 365, 852
Bst4CI	ACNGT	2 cut(s)	281, 473
Bst6I	CTCTTC	1 cut(s)	853
BstAFI	CTTAAG	1 cut(s)	524
BstAPI	GCANNNNNTGC	1 cut(s)	674
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	4 cut(s)	138, 722, 889, 1079
BstDSI	CCRYGG	1 cut(s)	420
BstEII	GGTNACC	1 cut(s)	626
BstF5I	GGATG	4 cut(s)	80, 96, 151, 1096
BstH2I	RGCGCY	1 cut(s)	932
BstHHI	GCGC	1 cut(s)	931
BstKTI	GATC	1 cut(s)	910
BstMAI	GTCTC	3 cut(s)	202, 238, 994
BstMBI	GATC	1 cut(s)	907
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 339, 674
BstNI	CCWGG	3 cut(s)	184, 365, 852
BstPI	GGTNACC	1 cut(s)	626
BstSCI	CCNGG	3 cut(s)	182, 363, 850
BstSFI	CTRYAG	1 cut(s)	331
BstV1I	GCAGC	6 cut(s)	317, 677, 680, 744, 943, 1100
BstV2I	GAAGAC	2 cut(s)	393, 557
BstXI	CCANNNNNNTGG	1 cut(s)	854
BsuI	GTATCC	2 cut(s)	854, 974
BsuRI	GGCC	3 cut(s)	108, 350, 824
BtgI	CCRYGG	1 cut(s)	420
BtsCI	GGATG	4 cut(s)	80, 96, 151, 1096
BtsI	GCAGTG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	340
BveI	ACCTGC	1 cut(s)	1034
Cac8I	GCNNGC	1 cut(s)	340
CaiI	CAGNNNCTG	1 cut(s)	959
CfoI	GCGC	1 cut(s)	931
Csp6I	GTAC	5 cut(s)	187, 713, 739, 774, 1076
CspCI	CAANNNNNGTGG	2 cut(s)	327, 362
CviAII	CATG	5 cut(s)	238, 421, 457, 985, 1156
CviQI	GTAC	5 cut(s)	187, 713, 739, 774, 1076
DdeI	CTNAG	4 cut(s)	138, 722, 889, 1079
DpnI	GATC	1 cut(s)	909
DpnII	GATC	1 cut(s)	907
EaeI	YGGCCR	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	853
EarI	CTCTTC	1 cut(s)	853
Eco130I	CCWWGG	3 cut(s)	103, 420, 631
Eco57I	CTGAAG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	911
Eco91I	GGTNACC	1 cut(s)	626
EcoO65I	GGTNACC	1 cut(s)	626
EcoRII	CCWGG	3 cut(s)	182, 363, 850
EcoT14I	CCWWGG	3 cut(s)	103, 420, 631
ErhI	CCWWGG	3 cut(s)	103, 420, 631
FaeI	CATG	5 cut(s)	241, 424, 460, 988, 1159
FaqI	GGGAC	1 cut(s)	1097
FatI	CATG	5 cut(s)	237, 420, 456, 984, 1155
Fnu4HI	GCNGC	7 cut(s)	331, 442, 666, 669, 758, 957, 1114
FokI	GGATG	4 cut(s)	67, 83, 158, 1103
Fsp4HI	GCNGC	7 cut(s)	331, 442, 666, 669, 758, 957, 1114
FspBI	CTAG	8 cut(s)	122, 344, 611, 632, 701, 753, 791, 921
GlaI	GCGC	1 cut(s)	930
GluI	GCNGC	7 cut(s)	331, 442, 666, 669, 758, 957, 1114
GsaI	CCCAGC	1 cut(s)	963
HaeII	RGCGCY	1 cut(s)	932
HaeIII	GGCC	3 cut(s)	108, 350, 824
HapII	CCGG	4 cut(s)	63, 321, 736, 825
HhaI	GCGC	1 cut(s)	931
Hin1II	CATG	5 cut(s)	241, 424, 460, 988, 1159
Hin6I	GCGC	1 cut(s)	929
HinP1I	GCGC	1 cut(s)	929
HinfI	GANTC	7 cut(s)	13, 128, 389, 416, 749, 1002, 1021
HpaII	CCGG	4 cut(s)	63, 321, 736, 825
HphI	GGTGA	4 cut(s)	83, 243, 499, 1025
Hpy166II	GTNNAC	2 cut(s)	277, 507
Hpy188I	TCNGA	2 cut(s)	139, 938
Hpy188III	TCNNGA	8 cut(s)	43, 267, 304, 321, 541, 911, 921, 1006
Hpy8I	GTNNAC	2 cut(s)	277, 507
HpyAV	CCTTC	4 cut(s)	201, 258, 814, 1003
HpyCH4III	ACNGT	2 cut(s)	281, 473
HpyCH4V	TGCA	6 cut(s)	4, 333, 338, 603, 1056, 1116
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 339, 674
HpyF3I	CTNAG	4 cut(s)	138, 722, 889, 1079
Hsp92II	CATG	5 cut(s)	241, 424, 460, 988, 1159
HspAI	GCGC	1 cut(s)	929
Kpn2I	TCCGGA	1 cut(s)	320
KpnI	GGTACC	2 cut(s)	190, 777
Kzo9I	GATC	1 cut(s)	907
LguI	GCTCTTC	1 cut(s)	853
LmnI	GCTCC	2 cut(s)	430, 1040
Lsp1109I	GCAGC	6 cut(s)	317, 677, 680, 744, 943, 1100
LweI	GCATC	4 cut(s)	450, 489, 577, 1084
MaeI	CTAG	8 cut(s)	122, 344, 611, 632, 701, 753, 791, 921
MaeIII	GTNAC	4 cut(s)	281, 626, 944, 1124
MalI	GATC	1 cut(s)	909
MboI	GATC	1 cut(s)	907
MboII	GAAGA	7 cut(s)	38, 398, 528, 562, 626, 775, 870
MhlI	GDGCHC	2 cut(s)	413, 837
MluCI	AATT	3 cut(s)	58, 545, 595
MlyI	GAGTC	4 cut(s)	383, 425, 758, 996
MmeI	TCCRAC	1 cut(s)	781
MroI	TCCGGA	1 cut(s)	320
MseI	TTAA	5 cut(s)	525, 896, 1050, 1176, 1228
MslI	CAYNNNNRTG	2 cut(s)	221, 852
MspA1I	CMGCKG	1 cut(s)	956
MspCI	CTTAAG	1 cut(s)	524
MspI	CCGG	4 cut(s)	63, 321, 736, 825
MspR9I	CCNGG	3 cut(s)	184, 365, 852
Mva1269I	GAATGC	1 cut(s)	1190
MvaI	CCWGG	3 cut(s)	184, 365, 852
MwoI	GCNNNNNNNGC	3 cut(s)	122, 339, 674
NcoI	CCATGG	1 cut(s)	420
NdeII	GATC	1 cut(s)	907
NlaIII	CATG	5 cut(s)	241, 424, 460, 988, 1159
NlaIV	GGNNCC	4 cut(s)	38, 188, 426, 775
NmeAIII	GCCGAG	1 cut(s)	134
OliI	CACNNNNGTG	1 cut(s)	852
PaeR7I	CTCGAG	1 cut(s)	911
PciSI	GCTCTTC	1 cut(s)	853
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PctI	GAATGC	1 cut(s)	1190
PfeI	GAWTC	3 cut(s)	13, 128, 1021
PflMI	CCANNNNNTGG	1 cut(s)	1104
PkrI	GCNGC	7 cut(s)	332, 443, 667, 670, 759, 958, 1115
PleI	GAGTC	4 cut(s)	383, 424, 757, 996
PpsI	GAGTC	4 cut(s)	383, 424, 757, 996
Psp6I	CCWGG	3 cut(s)	182, 363, 850
PspEI	GGTNACC	1 cut(s)	626
PspFI	CCCAGC	1 cut(s)	959
PspGI	CCWGG	3 cut(s)	182, 363, 850
PspN4I	GGNNCC	4 cut(s)	38, 188, 426, 775
PstI	CTGCAG	1 cut(s)	335
PstNI	CAGNNNCTG	1 cut(s)	959
PvuII	CAGCTG	1 cut(s)	956
RsaI	GTAC	5 cut(s)	188, 714, 740, 775, 1077
RsaNI	GTAC	5 cut(s)	187, 713, 739, 774, 1076
RseI	CAYNNNNRTG	2 cut(s)	221, 852
SapI	GCTCTTC	1 cut(s)	853
SaqAI	TTAA	5 cut(s)	525, 896, 1050, 1176, 1228
SatI	GCNGC	7 cut(s)	331, 442, 666, 669, 758, 957, 1114
Sau3AI	GATC	1 cut(s)	907
ScaI	AGTACT	2 cut(s)	714, 1077
SchI	GAGTC	4 cut(s)	383, 425, 758, 996
ScrFI	CCNGG	3 cut(s)	184, 365, 852
SduI	GDGCHC	2 cut(s)	413, 837
SfaNI	GCATC	4 cut(s)	450, 489, 577, 1084
SfcI	CTRYAG	1 cut(s)	331
Sfr274I	CTCGAG	1 cut(s)	911
SlaI	CTCGAG	1 cut(s)	911
SmiMI	CAYNNNNRTG	2 cut(s)	221, 852
SmlI	CTYRAG	3 cut(s)	524, 911, 1004
SmoI	CTYRAG	3 cut(s)	524, 911, 1004
Sse9I	AATT	3 cut(s)	58, 545, 595
SsiI	CCGC	2 cut(s)	441, 760
SspI	AATATT	1 cut(s)	1063
SspMI	CTAG	8 cut(s)	122, 344, 611, 632, 701, 753, 791, 921
StyD4I	CCNGG	3 cut(s)	182, 363, 850
StyI	CCWWGG	3 cut(s)	103, 420, 631
TaaI	ACNGT	2 cut(s)	281, 473
TaqI	TCGA	6 cut(s)	159, 213, 268, 497, 578, 912
TasI	AATT	3 cut(s)	58, 545, 595
TatI	WGTACW	2 cut(s)	712, 1075
TauI	GCSGC	1 cut(s)	444
TfiI	GAWTC	3 cut(s)	13, 128, 1021
Tru1I	TTAA	5 cut(s)	525, 896, 1050, 1176, 1228
Tru9I	TTAA	5 cut(s)	525, 896, 1050, 1176, 1228
TscAI	CASTG	1 cut(s)	340
TseI	GCWGC	6 cut(s)	330, 665, 668, 757, 956, 1113
TspDTI	ATGAA	4 cut(s)	162, 833, 1144, 1197
TspRI	CASTG	1 cut(s)	340
Van91I	CCANNNNNTGG	1 cut(s)	1104
Vha464I	CTTAAG	1 cut(s)	524
XbaI	TCTAGA	1 cut(s)	920
XhoI	CTCGAG	1 cut(s)	911
XmaJI	CCTAGG	1 cut(s)	631
XspI	CTAG	8 cut(s)	122, 344, 611, 632, 701, 753, 791, 921
ZrmI	AGTACT	2 cut(s)	714, 1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.