Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004695.1

Orthogroup ID

OG0003355

Physical Location & Seq

Genomic Coordinates Reverse (-)

12971 .. 13420

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004695.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgatgctccccaactgtttgttccactctggggactgttcgatgctgttcacaaatagaagatccctcaagcagcaagctatcttgaaactgaagtgtttggtaagaactcatatcggctcaagaaatgaagcttatgaatgttgcatgcgactagaggatgaaagaggatatgaaggtgttcggctttccaaacacctcaaaaaagaagcagctctggctctcacaacgaacccccaagttctagtaccaaaacttcttccactaaaagaaatattctgctacctggtgggctctaggcttcagaaaagaaatagtaccaagagccaaaaggtagaagcaatgggagtggcattgaatatgaaggctggaatagagcacttctgtatccaccccggtggaagactggaagagcaatcatacatggaattggtaggagcttatcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

149

Amino Acids

16.94

Weight (kDa)

9.24

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04530
fragaria_vesca	FvH4_7g20910 FvH4_7g20910 FvH4_7g20910
malus_domestica	MD01G1118800.v1.1 MD01G1119200.v1.1 MD07G1187000.v1.1 MD07G1187300.v1.1 MD07G1187400.v1.1 MD07G1187800.v1.1
prunus_persica	Prupe.2G103600_v2.0.a1 Prupe.2G103700_v2.0.a1 Prupe.2G225800_v2.0.a1 Prupe.2G225900_v2.0.a1
pyrus_communis	pycom01g14580
rosa_chinensis	RchiOBHm_Chr1g0364911 RchiOBHm_Chr1g0365221 RchiOBHm_Chr1g0365281
rosa_laevigata	RLG00000027434 RLG00000027437 RLG00000027460
rosa_multiflora	Rmu_sc0004695.1_g000003 Rmu_sc0004695.1_g000005 Rmu_sc0008035.1_g000016
rosa_roxburghii	Rroxscaffold_4G00291360 Rroxscaffold_4G00291900
rosa_rugosa	Rorug01G0111400 Rorug01G0320400
rosa_samantha	Rh1AG329400 Rh1AG329600 Rh1BG102500 Rh1BG290800 Rh1BG291000 Rh1CG307700 Rh1DG322500
rosa_wichuraiana	Rw1G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	57
AcuI	CTGAAG	2 cut(s)	113, 287
AfaI	GTAC	2 cut(s)	249, 319
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	88, 358
AjnI	CCWGG	1 cut(s)	285
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AleI	CACNNNNGTG	1 cut(s)	396
AluBI	AGCT	4 cut(s)	80, 134, 215, 440
AluI	AGCT	4 cut(s)	80, 134, 215, 440
Alw21I	GWGCWC	1 cut(s)	381
AlwI	GGATC	1 cut(s)	57
ApeKI	GCWGC	2 cut(s)	73, 212
Asp700I	GAANNNNTTC	1 cut(s)	180
AsuC2I	CCSGG	1 cut(s)	396
BaeI	ACNNNNGTAYC	2 cut(s)	370, 403
BanII	GRGCYC	1 cut(s)	296
BarI	GAAGNNNNNNTAC	2 cut(s)	240, 272
BbsI	GAAGAC	1 cut(s)	409
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	85, 224
BciT130I	CCWGG	1 cut(s)	287
BciVI	GTATCC	1 cut(s)	398
BcnI	CCSGG	1 cut(s)	396
BfaI	CTAG	3 cut(s)	155, 245, 297
BfuI	GTATCC	1 cut(s)	398
BisI	GCNGC	2 cut(s)	74, 213
BlsI	GCNGC	2 cut(s)	75, 214
Bme1390I	CCNGG	2 cut(s)	287, 396
BmrFI	CCNGG	2 cut(s)	287, 396
BmsI	GCATC	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	409
BpuEI	CTTGAG	2 cut(s)	53, 106
BpuMI	CCSGG	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	411
Bse3DI	GCAATG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	394
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	411
BseXI	GCAGC	2 cut(s)	85, 224
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	396
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	47
Bsp1286I	GDGCHC	2 cut(s)	296, 381
Bsp143I	GATC	1 cut(s)	62
BspPI	GGATC	1 cut(s)	57
BspQI	GCTCTTC	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	411
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	1 cut(s)	62
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	2 cut(s)	17, 38
Bst6I	CTCTTC	1 cut(s)	405
BstC8I	GCNNGC	2 cut(s)	78, 149
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	1 cut(s)	65
BstMBI	GATC	1 cut(s)	62
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	1 cut(s)	287
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	2 cut(s)	285, 394
BstV1I	GCAGC	2 cut(s)	85, 224
BstV2I	GAAGAC	1 cut(s)	409
BstX2I	RGATCY	1 cut(s)	62
BstXI	CCANNNNNNTGG	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	62
BsuI	GTATCC	1 cut(s)	398
BtsCI	GGATG	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	78, 149
CsiI	ACCWGGT	1 cut(s)	285
Csp6I	GTAC	2 cut(s)	248, 318
CspCI	CAANNNNNGTGG	2 cut(s)	330, 365
CviAII	CATG	2 cut(s)	148, 424
CviQI	GTAC	2 cut(s)	248, 318
DpnI	GATC	1 cut(s)	64
DpnII	GATC	1 cut(s)	62
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco24I	GRGCYC	1 cut(s)	296
Eco57I	CTGAAG	2 cut(s)	113, 287
EcoRII	CCWGG	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	296
FaeI	CATG	2 cut(s)	151, 427
FaiI	YATR	7 cut(s)	114, 138, 149, 174, 362, 421, 425
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	2 cut(s)	147, 423
Fnu4HI	GCNGC	2 cut(s)	74, 213
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	2 cut(s)	74, 213
FspBI	CTAG	3 cut(s)	155, 245, 297
GluI	GCNGC	2 cut(s)	74, 213
HapII	CCGG	1 cut(s)	396
Hin1II	CATG	2 cut(s)	151, 427
HindIII	AAGCTT	1 cut(s)	132
HpaII	CCGG	1 cut(s)	396
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	2 cut(s)	85, 123
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	2 cut(s)	170, 358
HpyCH4III	ACNGT	2 cut(s)	17, 38
HpyCH4V	TGCA	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
Hsp92II	CATG	2 cut(s)	151, 427
Kzo9I	GATC	1 cut(s)	62
LguI	GCTCTTC	1 cut(s)	405
LmnI	GCTCC	2 cut(s)	12, 437
LpnPI	CCDG	7 cut(s)	15, 203, 272, 299, 354, 392, 409
Lsp1109I	GCAGC	2 cut(s)	85, 224
LweI	GCATC	1 cut(s)	33
MabI	ACCWGGT	1 cut(s)	285
MaeI	CTAG	3 cut(s)	155, 245, 297
MalI	GATC	1 cut(s)	64
MboI	GATC	1 cut(s)	62
MboII	GAAGA	4 cut(s)	72, 251, 414, 422
MflI	RGATCY	1 cut(s)	62
MhlI	GDGCHC	2 cut(s)	296, 381
MluCI	AATT	1 cut(s)	428
MnlI	CCTC	4 cut(s)	77, 151, 161, 209
MroXI	GAANNNNTTC	1 cut(s)	180
MseI	TTAA	1 cut(s)	448
MslI	CAYNNNNRTG	1 cut(s)	396
MspI	CCGG	1 cut(s)	396
MspR9I	CCNGG	2 cut(s)	287, 396
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	218
NciI	CCSGG	1 cut(s)	396
NdeII	GATC	1 cut(s)	62
NlaIII	CATG	2 cut(s)	151, 427
NspI	RCATGY	1 cut(s)	151
OliI	CACNNNNGTG	1 cut(s)	396
PaeI	GCATGC	1 cut(s)	151
PciSI	GCTCTTC	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	180
PkrI	GCNGC	2 cut(s)	75, 214
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PsuI	RGATCY	1 cut(s)	62
RsaI	GTAC	2 cut(s)	249, 319
RsaNI	GTAC	2 cut(s)	248, 318
RseI	CAYNNNNRTG	1 cut(s)	396
SapI	GCTCTTC	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	448
SatI	GCNGC	2 cut(s)	74, 213
Sau3AI	GATC	1 cut(s)	62
ScrFI	CCNGG	2 cut(s)	287, 396
SduI	GDGCHC	2 cut(s)	296, 381
SetI	ASST	8 cut(s)	82, 136, 181, 201, 217, 288, 336, 442
SexAI	ACCWGGT	1 cut(s)	285
SfaNI	GCATC	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	2 cut(s)	68, 121
SmoI	CTYRAG	2 cut(s)	68, 121
SphI	GCATGC	1 cut(s)	151
Sse9I	AATT	1 cut(s)	428
SspI	AATATT	1 cut(s)	276
SspMI	CTAG	3 cut(s)	155, 245, 297
StyD4I	CCNGG	2 cut(s)	285, 394
TaaI	ACNGT	2 cut(s)	17, 38
TaqI	TCGA	1 cut(s)	41
TasI	AATT	1 cut(s)	428
Tru1I	TTAA	1 cut(s)	448
Tru9I	TTAA	1 cut(s)	448
TseI	GCWGC	2 cut(s)	73, 212
TspDTI	ATGAA	5 cut(s)	144, 153, 177, 189, 377
XceI	RCATGY	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	3 cut(s)	155, 245, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.