Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003355

Physical Location & Seq

Genomic Coordinates Reverse (-)

15995144 .. 15996528

Gene Structure 1385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G103600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGCGATGTGTTTGCTTGCTCTTTTCTATGGTCTCTCCTGCCTCCATAAGATAGTTCTGCGTAGGAGAGACCAGGCCTGCTATCTGCTGGCCTATGAATGCTACATGCCCACAAATGACATGATGCTCAGCACTGATTCTTGTGTCAAAATCGTCACACGGAACAAGAATCTAGGGTTGGAGGAGTTCAGGTTTCTCTTGAAAACAATTGTCAATTCCGGCATCGGTGAGGAAACTTATTGCCCAAAAAACATCATTGAAGGCCGAGAAGATGATGCAACCCTAGTAGATGAGCTTTTGGAAATGGATGACATCGTCTTCGACACACTGGACAAGCTCTTTGCTAAGTTTAGTGCAATTTCTCCATCACAAATCGACATTCTTGTGGTCAATGTGTCCATGTTCAGCCCTGCACCCTCTCTAACATCCCGTATAGTAAACCGCTACAAAATGAGGGAGGACATCAAGACCTTCAACCTCTCAGGAATGGGCTGCAAATCCATATCTCCTCATTGGTACTGCGGCAAAGAAAAATCCATGATGCTCACGAACTGTCTGTTTCGCTCGGGAGGGTGTTCGATGCTGTTCACAAACAACAGAGACCTAAAGCACCAAGCCAAGTTGAAACTAAATCATTTGGTGAGAATGCATACTGGCTCAAGTGATGAAGCATATAACTGTTGTATGCAGGTGGAAGATGAAAGTGGATATAAAGGTTTTCGACTTACCAAATACCTTGTAAAAGCAGCAAGTCAGGGATTTACAATGAACCTCCAAGTTCTATTACCAAAAGTGCTTCCACTAAGAGAAATGCTTAGGTACCTGGTGATATCTAAGCTTAAAAGTGCCAAAAGCCAAAAGGTAAAAGCAGATGAGGGAGTTGGGTTGAATCTTAAGACCGGGATTGAGCACTTTTGCATTCACCCTGGTGGAAGAGCAGTCATAGATGGGATTGGTAAGAGCTTGGGGCTAAGTGATTATGATGTTGAGCCATCTAGAATGGCACTTCACAGGTTTGGGAACACATCAGCTGCTGGGTTTTGGTATGCTTTGGGATACATGGAGGCCAAGAAGAGGCTCAAGAAGGGGAACAAAATTCTGATGAGTGGATTTGGAGCAGGTTTTAAGTGCAACAATATTGTGTGGGAAGTGCTGAAGGACTTGGATGATGCAAATGTTTGGAAAGACTGCATAGACAGCTACCCTCCTAATAACCTAGTCAATCCATTCATGGAGAAGTACAGTTGGATCGATGATGAAATTCTAAACTTTGTTAGGTTTGATGTTTCTCAATTAGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

435

Amino Acids

49.07

Weight (kDa)

8.49

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04530
fragaria_vesca	FvH4_7g20910 FvH4_7g20910 FvH4_7g20910
malus_domestica	MD01G1118800.v1.1 MD01G1119200.v1.1 MD07G1187000.v1.1 MD07G1187300.v1.1 MD07G1187400.v1.1 MD07G1187800.v1.1
prunus_persica	Prupe.2G103600_v2.0.a1 Prupe.2G103700_v2.0.a1 Prupe.2G225800_v2.0.a1 Prupe.2G225900_v2.0.a1
pyrus_communis	pycom01g14580
rosa_chinensis	RchiOBHm_Chr1g0364911 RchiOBHm_Chr1g0365221 RchiOBHm_Chr1g0365281
rosa_laevigata	RLG00000027434 RLG00000027437 RLG00000027460
rosa_multiflora	Rmu_sc0004695.1_g000003 Rmu_sc0004695.1_g000005 Rmu_sc0008035.1_g000016
rosa_roxburghii	Rroxscaffold_4G00291360 Rroxscaffold_4G00291900
rosa_rugosa	Rorug01G0111400 Rorug01G0320400
rosa_samantha	Rh1AG329400 Rh1AG329600 Rh1BG102500 Rh1BG290800 Rh1BG291000 Rh1CG307700 Rh1DG322500
rosa_wichuraiana	Rw1G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	679
Acc36I	ACCTGC	2 cut(s)	679, 1109
Acc65I	GGTACC	1 cut(s)	819
AccB1I	GGYRCC	1 cut(s)	819
AciI	CCGC	2 cut(s)	442, 522
AclWI	GGATC	1 cut(s)	1256
AcsI	RAATTY	2 cut(s)	1095, 1260
AcuI	CTGAAG	1 cut(s)	1175
AfaI	GTAC	3 cut(s)	518, 821, 1241
AfiI	CCNNNNNNNGG	1 cut(s)	1074
AflII	CTTAAG	1 cut(s)	893
AgsI	TTSAA	5 cut(s)	202, 260, 475, 625, 889
AjnI	CCWGG	3 cut(s)	72, 822, 925
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AleI	CACNNNNGTG	1 cut(s)	927
AluBI	AGCT	7 cut(s)	295, 337, 838, 963, 1031, 1200, 1298
AluI	AGCT	7 cut(s)	295, 337, 838, 963, 1031, 1200, 1298
Alw21I	GWGCWC	1 cut(s)	912
Alw26I	GTCTC	3 cut(s)	38, 63, 594
AlwI	GGATC	1 cut(s)	1256
AlwNI	CAGNNNCTG	1 cut(s)	1034
Ama87I	CYCGRG	1 cut(s)	565
AoxI	GGCC	4 cut(s)	75, 90, 262, 1065
ApeKI	GCWGC	4 cut(s)	492, 746, 1031, 1298
ApoI	RAATTY	2 cut(s)	1095, 1260
ArsI	GACNNNNNNTTYG	4 cut(s)	302, 323, 334, 355
Asp718I	GGTACC	1 cut(s)	819
AsuC2I	CCSGG	1 cut(s)	901
AsuHPI	GGTGA	4 cut(s)	239, 652, 838, 914
AvaI	CYCGRG	1 cut(s)	565
BanI	GGYRCC	1 cut(s)	819
BbsI	GAAGAC	1 cut(s)	310
Bbv12I	GWGCWC	1 cut(s)	912
BbvI	GCAGC	4 cut(s)	479, 758, 1018, 1285
BccI	CCATC	3 cut(s)	373, 941, 1000
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	3 cut(s)	74, 824, 927
BciVI	GTATCC	1 cut(s)	1049
BcnI	CCSGG	1 cut(s)	901
BcoDI	GTCTC	3 cut(s)	38, 63, 594
BfaI	CTAG	4 cut(s)	173, 284, 996, 1217
BfrI	CTTAAG	1 cut(s)	893
BfuAI	ACCTGC	2 cut(s)	679, 1109
BfuI	GTATCC	1 cut(s)	1049
BisI	GCNGC	5 cut(s)	493, 523, 747, 1032, 1299
BlpI	GCTNAGC	1 cut(s)	128
BlsI	GCNGC	5 cut(s)	494, 524, 748, 1033, 1300
Bme1390I	CCNGG	4 cut(s)	74, 824, 901, 927
BmeT110I	CYCGRG	1 cut(s)	565
BmiI	GGNNCC	1 cut(s)	821
BmrFI	CCNGG	4 cut(s)	74, 824, 901, 927
BmsI	GCATC	6 cut(s)	114, 231, 265, 531, 570, 1159
BpiI	GAAGAC	1 cut(s)	310
Bpu10I	CCTNAGC	1 cut(s)	815
Bpu1102I	GCTNAGC	1 cut(s)	128
BpuEI	CTTGAG	2 cut(s)	643, 1064
BpuMI	CCSGG	1 cut(s)	901
Bsa29I	ATCGAT	1 cut(s)	1251
BsaI	GGTCTC	3 cut(s)	38, 63, 594
BsaJI	CCNNGG	1 cut(s)	925
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	1074
Bse1I	ACTGG	2 cut(s)	333, 658
BseBI	CCWGG	3 cut(s)	74, 824, 927
BseCI	ATCGAT	1 cut(s)	1251
BseDI	CCNNGG	1 cut(s)	925
BseGI	GGATG	3 cut(s)	313, 425, 1171
BseLI	CCNNNNNNNGG	1 cut(s)	1074
BseMII	CTCAG	2 cut(s)	142, 495
BseNI	ACTGG	2 cut(s)	333, 658
BseRI	GAGGAG	2 cut(s)	197, 498
BseXI	GCAGC	4 cut(s)	479, 758, 1018, 1285
BseYI	CCCAGC	1 cut(s)	1034
BsgI	GTGCAG	1 cut(s)	396
BshFI	GGCC	4 cut(s)	77, 92, 264, 1067
BshNI	GGYRCC	1 cut(s)	819
BshVI	ATCGAT	1 cut(s)	1251
BsiHKAI	GWGCWC	1 cut(s)	912
BsiHKCI	CYCGRG	1 cut(s)	565
BsiSI	CCGG	2 cut(s)	219, 900
BslI	CCNNNNNNNGG	1 cut(s)	1074
BsmAI	GTCTC	3 cut(s)	38, 63, 594
BsmI	GAATGC	3 cut(s)	104, 651, 918
BsnI	GGCC	4 cut(s)	77, 92, 264, 1067
Bso31I	GGTCTC	3 cut(s)	38, 63, 594
BsoBI	CYCGRG	1 cut(s)	565
Bsp1286I	GDGCHC	1 cut(s)	912
Bsp143I	GATC	1 cut(s)	1248
Bsp1720I	GCTNAGC	1 cut(s)	128
BspACI	CCGC	2 cut(s)	442, 522
BspANI	GGCC	4 cut(s)	77, 92, 264, 1067
BspCNI	CTCAG	2 cut(s)	141, 494
BspDI	ATCGAT	1 cut(s)	1251
BspLI	GGNNCC	1 cut(s)	821
BspMI	ACCTGC	2 cut(s)	679, 1109
BspPI	GGATC	1 cut(s)	1256
BspQI	GCTCTTC	1 cut(s)	928
BspT107I	GGYRCC	1 cut(s)	819
BspTI	CTTAAG	1 cut(s)	893
BspTNI	GGTCTC	3 cut(s)	38, 63, 594
BsrI	ACTGG	2 cut(s)	333, 658
BssECI	CCNNGG	1 cut(s)	925
BssMI	GATC	1 cut(s)	1248
Bst2UI	CCWGG	3 cut(s)	74, 824, 927
Bst4CI	ACNGT	3 cut(s)	554, 680, 1244
Bst6I	CTCTTC	2 cut(s)	928, 1067
BstAFI	CTTAAG	1 cut(s)	893
BstC8I	GCNNGC	3 cut(s)	18, 79, 90
BstDEI	CTNAG	7 cut(s)	128, 345, 481, 803, 815, 834, 971
BstF5I	GGATG	3 cut(s)	313, 425, 1171
BstKTI	GATC	1 cut(s)	1251
BstMAI	GTCTC	3 cut(s)	38, 63, 594
BstMBI	GATC	1 cut(s)	1248
BstMWI	GCNNNNNNNGC	1 cut(s)	1197
BstNI	CCWGG	3 cut(s)	74, 824, 927
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	4 cut(s)	72, 822, 899, 925
BstV1I	GCAGC	4 cut(s)	479, 758, 1018, 1285
BstV2I	GAAGAC	1 cut(s)	310
Bsu15I	ATCGAT	1 cut(s)	1251
BsuI	GTATCC	1 cut(s)	1049
BsuRI	GGCC	4 cut(s)	77, 92, 264, 1067
BsuTUI	ATCGAT	1 cut(s)	1251
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	3 cut(s)	313, 425, 1171
BtsIMutI	CAGTG	2 cut(s)	132, 326
BveI	ACCTGC	2 cut(s)	679, 1109
Cac8I	GCNNGC	3 cut(s)	18, 79, 90
CaiI	CAGNNNCTG	1 cut(s)	1034
ClaI	ATCGAT	1 cut(s)	1251
CsiI	ACCWGGT	1 cut(s)	822
Csp6I	GTAC	3 cut(s)	517, 820, 1240
CviAII	CATG	6 cut(s)	106, 121, 400, 538, 1060, 1231
CviQI	GTAC	3 cut(s)	517, 820, 1240
DdeI	CTNAG	7 cut(s)	128, 345, 481, 803, 815, 834, 971
DpnI	GATC	1 cut(s)	1250
DpnII	GATC	1 cut(s)	1248
Eam1104I	CTCTTC	2 cut(s)	928, 1067
EarI	CTCTTC	2 cut(s)	928, 1067
Eco147I	AGGCCT	1 cut(s)	77
Eco31I	GGTCTC	3 cut(s)	38, 63, 594
Eco32I	GATATC	1 cut(s)	831
Eco57I	CTGAAG	1 cut(s)	1175
Eco88I	CYCGRG	1 cut(s)	565
EcoRII	CCWGG	3 cut(s)	72, 822, 925
EcoRV	GATATC	1 cut(s)	831
EcoT22I	ATGCAT	1 cut(s)	651
FaeI	CATG	6 cut(s)	109, 124, 403, 541, 1063, 1234
FatI	CATG	6 cut(s)	105, 120, 399, 537, 1059, 1230
Fnu4HI	GCNGC	5 cut(s)	493, 523, 747, 1032, 1299
FokI	GGATG	3 cut(s)	320, 412, 1178
Fsp4HI	GCNGC	5 cut(s)	493, 523, 747, 1032, 1299
FspBI	CTAG	4 cut(s)	173, 284, 996, 1217
GluI	GCNGC	5 cut(s)	493, 523, 747, 1032, 1299
GsaI	CCCAGC	1 cut(s)	1038
HaeIII	GGCC	4 cut(s)	77, 92, 264, 1067
HapII	CCGG	2 cut(s)	219, 900
Hin1II	CATG	6 cut(s)	109, 124, 403, 541, 1063, 1234
HindIII	AAGCTT	1 cut(s)	836
HinfI	GANTC	3 cut(s)	137, 169, 889
HpaII	CCGG	2 cut(s)	219, 900
HphI	GGTGA	4 cut(s)	239, 652, 838, 914
Hpy166II	GTNNAC	2 cut(s)	439, 588
Hpy188I	TCNGA	1 cut(s)	1101
Hpy188III	TCNNGA	7 cut(s)	199, 466, 483, 547, 567, 996, 1081
Hpy8I	GTNNAC	2 cut(s)	439, 588
HpyAV	CCTTC	4 cut(s)	254, 481, 1078, 1150
HpyCH4III	ACNGT	3 cut(s)	554, 680, 1244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1197
HpyF3I	CTNAG	7 cut(s)	128, 345, 481, 803, 815, 834, 971
Hsp92II	CATG	6 cut(s)	109, 124, 403, 541, 1063, 1234
KpnI	GGTACC	1 cut(s)	823
Kzo9I	GATC	1 cut(s)	1248
LguI	GCTCTTC	1 cut(s)	928
LmnI	GCTCC	1 cut(s)	1115
Lsp1109I	GCAGC	4 cut(s)	479, 758, 1018, 1285
LweI	GCATC	6 cut(s)	114, 231, 265, 531, 570, 1159
MabI	ACCWGGT	1 cut(s)	822
MaeI	CTAG	4 cut(s)	173, 284, 996, 1217
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	1250
MboI	GATC	1 cut(s)	1248
MboII	GAAGA	5 cut(s)	281, 310, 707, 945, 1084
MfeI	CAATTG	1 cut(s)	207
MhlI	GDGCHC	1 cut(s)	912
MluCI	AATT	6 cut(s)	207, 214, 357, 1095, 1260, 1292
MmeI	TCCRAC	2 cut(s)	159, 1226
Mph1103I	ATGCAT	1 cut(s)	651
MseI	TTAA	4 cut(s)	840, 894, 1125, 1303
MslI	CAYNNNNRTG	2 cut(s)	383, 927
MspA1I	CMGCKG	1 cut(s)	1031
MspCI	CTTAAG	1 cut(s)	893
MspI	CCGG	2 cut(s)	219, 900
MspR9I	CCNGG	4 cut(s)	74, 824, 901, 927
MunI	CAATTG	1 cut(s)	207
Mva1269I	GAATGC	3 cut(s)	104, 651, 918
MvaI	CCWGG	3 cut(s)	74, 824, 927
MwoI	GCNNNNNNNGC	1 cut(s)	1197
NciI	CCSGG	1 cut(s)	901
NdeII	GATC	1 cut(s)	1248
NlaIII	CATG	6 cut(s)	109, 124, 403, 541, 1063, 1234
NlaIV	GGNNCC	1 cut(s)	821
NmeAIII	GCCGAG	1 cut(s)	290
NmuCI	GTSAC	1 cut(s)	154
NsiI	ATGCAT	1 cut(s)	651
NspI	RCATGY	1 cut(s)	109
OliI	CACNNNNGTG	1 cut(s)	927
PaqCI	CACCTGC	1 cut(s)	679
PceI	AGGCCT	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	928
PctI	GAATGC	3 cut(s)	104, 651, 918
PfeI	GAWTC	3 cut(s)	137, 169, 889
PflFI	GACNNNGTC	1 cut(s)	314
PkrI	GCNGC	5 cut(s)	494, 524, 748, 1033, 1300
Psp6I	CCWGG	3 cut(s)	72, 822, 925
PspFI	CCCAGC	1 cut(s)	1034
PspGI	CCWGG	3 cut(s)	72, 822, 925
PspN4I	GGNNCC	1 cut(s)	821
PstNI	CAGNNNCTG	1 cut(s)	1034
PsyI	GACNNNGTC	1 cut(s)	314
PvuII	CAGCTG	1 cut(s)	1031
RsaI	GTAC	3 cut(s)	518, 821, 1241
RsaNI	GTAC	3 cut(s)	517, 820, 1240
RseI	CAYNNNNRTG	2 cut(s)	383, 927
SapI	GCTCTTC	1 cut(s)	928
SaqAI	TTAA	4 cut(s)	840, 894, 1125, 1303
SatI	GCNGC	5 cut(s)	493, 523, 747, 1032, 1299
Sau3AI	GATC	1 cut(s)	1248
ScrFI	CCNGG	4 cut(s)	74, 824, 901, 927
SduI	GDGCHC	1 cut(s)	912
SexAI	ACCWGGT	1 cut(s)	822
SfaNI	GCATC	6 cut(s)	114, 231, 265, 531, 570, 1159
SmiMI	CAYNNNNRTG	2 cut(s)	383, 927
SmlI	CTYRAG	3 cut(s)	658, 893, 1079
SmoI	CTYRAG	3 cut(s)	658, 893, 1079
Sse9I	AATT	6 cut(s)	207, 214, 357, 1095, 1260, 1292
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	2 cut(s)	442, 522
SspI	AATATT	1 cut(s)	1138
SspMI	CTAG	4 cut(s)	173, 284, 996, 1217
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	4 cut(s)	72, 822, 899, 925
TaaI	ACNGT	3 cut(s)	554, 680, 1244
TaqI	TCGA	5 cut(s)	321, 375, 578, 721, 1251
TasI	AATT	6 cut(s)	207, 214, 357, 1095, 1260, 1292
TatI	WGTACW	1 cut(s)	1239
TauI	GCSGC	1 cut(s)	525
TfiI	GAWTC	3 cut(s)	137, 169, 889
Tru1I	TTAA	4 cut(s)	840, 894, 1125, 1303
Tru9I	TTAA	4 cut(s)	840, 894, 1125, 1303
TscAI	CASTG	2 cut(s)	139, 333
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	4 cut(s)	492, 746, 1031, 1298
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	6 cut(s)	111, 681, 714, 782, 1219, 1272
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	2 cut(s)	139, 333
Tth111I	GACNNNGTC	1 cut(s)	314
Vha464I	CTTAAG	1 cut(s)	893
XapI	RAATTY	2 cut(s)	1095, 1260
XbaI	TCTAGA	1 cut(s)	995
XceI	RCATGY	1 cut(s)	109
XspI	CTAG	4 cut(s)	173, 284, 996, 1217
Zsp2I	ATGCAT	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.