Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003355

Physical Location & Seq

Genomic Coordinates Reverse (-)

23317924 .. 23318862

Gene Structure 939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1119200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAGGGAGGACATCAAGAGCTTCAACCTCTCGGGAATGGGCTACAGTGCAAGCCTCGTTGCCGTTGATGTTGTGCACAAGTCGTATAAGAACGCAAATGTGGTCGTTGTCAGCACAGAATCCATAGCTCCAAACTGGTATTGCGGCAAAGAAAAATCCATGATGCTCACAAACTGTCTGTTCCGCTCAGGAGGGTGTTCGATGCTGTTCACAAACAACAGAACCCTACAACACCAAGCCAAGTTGAAGTTAAAGCATTTGATACGTACACACATTGGCTCGAGCGACAAAGCGTATGAATGCTGCATACAACTAGAAGGTGAGAGTGGATATCTAGGGTTTCGTCTCACCAAACACCTTACAAAAGCAGCAGCTATAGCTTTTACTATGAACCTCCAAGATCTAGCCCCAAAAGTAGTGCTTTCACTGAGAGAAATATTTCACTACCTAGTGGCCTCTAGGGTTCGGAATAGAACTAGTACTAAAAGCCAAAAGTTGGGAGCAGTTGGTATAGGGTTGTGTCTCAAGGCAGGAATAGAGCATTTCTGTATTCACCCTGGTGGAAGAGCAAATATAGATGGGATTGGGAAGAGCTTAGGGTTAAGTGATTATGATCTTGAGCTGTCTAGAATGGCGCTTCACCGGTTTGGCAACACGTCAGCAGCCAGATTTTGGTACGCTTTGGGATACATGCAGGCAAAGAAGAGGCTTAAGAAGGCCAACAAAATTCTGATGAGTGGATTTGGAGCAGGTTTTAAGTACAACAACATTGTGTGGGAAGTATTGAAGGACTTGGATGATGCCAATGTGTGGAAAGGCTGCATAGAAAGTTACCCTCCTAATAATACTTTGGGCAATCCTTTCATGGAGAAGTATAGTTGGCTCAATGATGAATGTCTAAGCTTCGTTAGGCTCGATTTCTCCCAAATTTTCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

313

Amino Acids

34.91

Weight (kDa)

9.41

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAE1_CUT1_RppA	PF08392	1 - 152	2.1e-54	FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C	PF08541	178 - 260	5.1e-11	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C	PF02797	182 - 254	1.9e-08	Chalcone and stilbene synthases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04530
fragaria_vesca	FvH4_7g20910 FvH4_7g20910 FvH4_7g20910
malus_domestica	MD01G1118800.v1.1 MD01G1119200.v1.1 MD07G1187000.v1.1 MD07G1187300.v1.1 MD07G1187400.v1.1 MD07G1187800.v1.1
prunus_persica	Prupe.2G103600_v2.0.a1 Prupe.2G103700_v2.0.a1 Prupe.2G225800_v2.0.a1 Prupe.2G225900_v2.0.a1
pyrus_communis	pycom01g14580
rosa_chinensis	RchiOBHm_Chr1g0364911 RchiOBHm_Chr1g0365221 RchiOBHm_Chr1g0365281
rosa_laevigata	RLG00000027434 RLG00000027437 RLG00000027460
rosa_multiflora	Rmu_sc0004695.1_g000003 Rmu_sc0004695.1_g000005 Rmu_sc0008035.1_g000016
rosa_roxburghii	Rroxscaffold_4G00291360 Rroxscaffold_4G00291900
rosa_rugosa	Rorug01G0111400 Rorug01G0320400
rosa_samantha	Rh1AG329400 Rh1AG329600 Rh1BG102500 Rh1BG290800 Rh1BG291000 Rh1CG307700 Rh1DG322500
rosa_wichuraiana	Rw1G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	740
AccB7I	CCANNNNNTGG	3 cut(s)	496, 672, 810
AccBSI	CCGCTC	1 cut(s)	186
AciI	CCGC	2 cut(s)	144, 184
AcsI	RAATTY	2 cut(s)	726, 927
AfaI	GTAC	4 cut(s)	268, 481, 677, 761
AfiI	CCNNNNNNNGG	3 cut(s)	496, 672, 810
AflII	CTTAAG	1 cut(s)	710
AflIII	ACRYGT	1 cut(s)	654
AgeI	ACCGGT	1 cut(s)	642
AgsI	TTSAA	3 cut(s)	25, 247, 787
AhlI	ACTAGT	1 cut(s)	476
AjiI	CACGTC	1 cut(s)	657
AjnI	CCWGG	1 cut(s)	556
AleI	CACNNNNGTG	1 cut(s)	558
AluBI	AGCT	7 cut(s)	21, 128, 374, 380, 594, 622, 903
AluI	AGCT	7 cut(s)	21, 128, 374, 380, 594, 622, 903
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	2 cut(s)	350, 527
Alw44I	GTGCAC	1 cut(s)	74
Ama87I	CYCGRG	2 cut(s)	31, 280
AoxI	GGCC	2 cut(s)	453, 717
ApaLI	GTGCAC	1 cut(s)	74
ApeKI	GCWGC	5 cut(s)	303, 368, 371, 662, 819
ApoI	RAATTY	2 cut(s)	726, 927
AsiGI	ACCGGT	1 cut(s)	642
Asp700I	GAANNNNTTC	1 cut(s)	438
AspLEI	GCGC	1 cut(s)	637
AsuHPI	GGTGA	4 cut(s)	332, 340, 545, 632
AvaI	CYCGRG	2 cut(s)	31, 280
BaeGI	GKGCMC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	5 cut(s)	290, 380, 383, 674, 806
BccI	CCATC	1 cut(s)	572
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	558
BciVI	GTATCC	1 cut(s)	680
BcoDI	GTCTC	2 cut(s)	350, 527
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	7 cut(s)	314, 335, 404, 449, 459, 477, 627
BfmI	CTRYAG	2 cut(s)	43, 375
BfoI	RGCGCY	1 cut(s)	638
BfrI	CTTAAG	1 cut(s)	710
BfuAI	ACCTGC	1 cut(s)	740
BfuI	GTATCC	1 cut(s)	680
BglII	AGATCT	1 cut(s)	400
BisI	GCNGC	6 cut(s)	145, 304, 369, 372, 663, 820
BlsI	GCNGC	6 cut(s)	146, 305, 370, 373, 664, 821
BmcAI	AGTACT	1 cut(s)	481
Bme1390I	CCNGG	1 cut(s)	558
BmeT110I	CYCGRG	2 cut(s)	31, 280
BmgBI	CACGTC	1 cut(s)	657
BmrFI	CCNGG	1 cut(s)	558
BmsI	GCATC	3 cut(s)	153, 192, 790
Bpu10I	CCTNAGC	2 cut(s)	187, 595
BpuEI	CTTGAG	2 cut(s)	509, 638
BsaAI	YACGTR	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	612
BsaJI	CCNNGG	1 cut(s)	556
BsaWI	WCCGGW	1 cut(s)	642
Bsc4I	CCNNNNNNNGG	3 cut(s)	496, 672, 810
Bse118I	RCCGGY	1 cut(s)	642
Bse1I	ACTGG	1 cut(s)	140
Bse8I	GATNNNNATC	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	1 cut(s)	556
BseGI	GGATG	1 cut(s)	802
BseJI	GATNNNNATC	1 cut(s)	612
BseLI	CCNNNNNNNGG	3 cut(s)	496, 672, 810
BseMII	CTCAG	2 cut(s)	201, 419
BseNI	ACTGG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	78
BseXI	GCAGC	5 cut(s)	290, 380, 383, 674, 806
BshFI	GGCC	2 cut(s)	455, 719
BshTI	ACCGGT	1 cut(s)	642
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	2 cut(s)	31, 280
BsiSI	CCGG	1 cut(s)	643
BslI	CCNNNNNNNGG	3 cut(s)	496, 672, 810
BsmAI	GTCTC	2 cut(s)	350, 527
BsmBI	CGTCTC	1 cut(s)	350
BsmI	GAATGC	1 cut(s)	305
BsnI	GGCC	2 cut(s)	455, 719
BsoBI	CYCGRG	2 cut(s)	31, 280
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	2 cut(s)	400, 613
BspACI	CCGC	2 cut(s)	144, 184
BspANI	GGCC	2 cut(s)	455, 719
BspCNI	CTCAG	2 cut(s)	200, 420
BspMI	ACCTGC	1 cut(s)	740
BspQI	GCTCTTC	2 cut(s)	559, 584
BspTI	CTTAAG	1 cut(s)	710
BsrBI	CCGCTC	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	642
BsrI	ACTGG	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	642
BssECI	CCNNGG	1 cut(s)	556
BssMI	GATC	2 cut(s)	400, 613
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	2 cut(s)	47, 176
Bst6I	CTCTTC	3 cut(s)	559, 584, 698
BstAFI	CTTAAG	1 cut(s)	710
BstBAI	YACGTR	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	52, 696
BstDEI	CTNAG	4 cut(s)	187, 428, 595, 899
BstF5I	GGATG	1 cut(s)	802
BstH2I	RGCGCY	1 cut(s)	638
BstHHI	GCGC	1 cut(s)	637
BstKTI	GATC	2 cut(s)	403, 616
BstMAI	GTCTC	2 cut(s)	350, 527
BstMBI	GATC	2 cut(s)	400, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	1 cut(s)	558
BstNSI	RCATGY	1 cut(s)	694
BstSCI	CCNGG	1 cut(s)	556
BstSFI	CTRYAG	2 cut(s)	43, 375
BstSLI	GKGCMC	1 cut(s)	78
BstSNI	TACGTA	1 cut(s)	266
BstV1I	GCAGC	5 cut(s)	290, 380, 383, 674, 806
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuI	GTATCC	1 cut(s)	680
BsuRI	GGCC	2 cut(s)	455, 719
BtrI	CACGTC	1 cut(s)	657
BtsCI	GGATG	1 cut(s)	802
BtsIMutI	CAGTG	2 cut(s)	52, 425
BveI	ACCTGC	1 cut(s)	740
Cac8I	GCNNGC	2 cut(s)	52, 696
CfoI	GCGC	1 cut(s)	637
Cfr10I	RCCGGY	1 cut(s)	642
Csp6I	GTAC	4 cut(s)	267, 480, 676, 760
CspAI	ACCGGT	1 cut(s)	642
CviAII	CATG	3 cut(s)	160, 691, 865
CviQI	GTAC	4 cut(s)	267, 480, 676, 760
DdeI	CTNAG	4 cut(s)	187, 428, 595, 899
DpnI	GATC	2 cut(s)	402, 615
DpnII	GATC	2 cut(s)	400, 613
Eam1104I	CTCTTC	3 cut(s)	559, 584, 698
EarI	CTCTTC	3 cut(s)	559, 584, 698
Eco105I	TACGTA	1 cut(s)	266
Eco32I	GATATC	1 cut(s)	332
Eco88I	CYCGRG	2 cut(s)	31, 280
EcoRII	CCWGG	1 cut(s)	556
EcoRV	GATATC	1 cut(s)	332
Esp3I	CGTCTC	1 cut(s)	350
FaeI	CATG	3 cut(s)	163, 694, 868
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FatI	CATG	3 cut(s)	159, 690, 864
Fnu4HI	GCNGC	6 cut(s)	145, 304, 369, 372, 663, 820
FokI	GGATG	1 cut(s)	809
Fsp4HI	GCNGC	6 cut(s)	145, 304, 369, 372, 663, 820
FspBI	CTAG	7 cut(s)	314, 335, 404, 449, 459, 477, 627
GlaI	GCGC	1 cut(s)	636
GluI	GCNGC	6 cut(s)	145, 304, 369, 372, 663, 820
HaeII	RGCGCY	1 cut(s)	638
HaeIII	GGCC	2 cut(s)	455, 719
HapII	CCGG	1 cut(s)	643
HhaI	GCGC	1 cut(s)	637
Hin1II	CATG	3 cut(s)	163, 694, 868
Hin6I	GCGC	1 cut(s)	635
HinP1I	GCGC	1 cut(s)	635
HindIII	AAGCTT	1 cut(s)	901
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	1 cut(s)	643
HphI	GGTGA	4 cut(s)	332, 340, 545, 632
Hpy166II	GTNNAC	3 cut(s)	76, 210, 269
Hpy188I	TCNGA	2 cut(s)	468, 732
Hpy188III	TCNNGA	5 cut(s)	16, 33, 189, 617, 627
Hpy8I	GTNNAC	3 cut(s)	76, 210, 269
HpyAV	CCTTC	3 cut(s)	311, 709, 781
HpyCH4III	ACNGT	2 cut(s)	47, 176
HpyCH4IV	ACGT	2 cut(s)	265, 656
HpyCH4V	TGCA	5 cut(s)	50, 76, 306, 694, 822
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	4 cut(s)	187, 428, 595, 899
HpySE526I	ACGT	2 cut(s)	265, 656
Hsp92II	CATG	3 cut(s)	163, 694, 868
HspAI	GCGC	1 cut(s)	635
Kzo9I	GATC	2 cut(s)	400, 613
LguI	GCTCTTC	2 cut(s)	559, 584
LmnI	GCTCC	3 cut(s)	133, 500, 746
LpnPI	CCDG	9 cut(s)	121, 174, 516, 543, 570, 656, 679, 680, 735
Lsp1109I	GCAGC	5 cut(s)	290, 380, 383, 674, 806
LweI	GCATC	3 cut(s)	153, 192, 790
MaeI	CTAG	7 cut(s)	314, 335, 404, 449, 459, 477, 627
MaeII	ACGT	2 cut(s)	265, 656
MaeIII	GTNAC	1 cut(s)	830
MalI	GATC	2 cut(s)	402, 615
MbiI	CCGCTC	1 cut(s)	186
MboI	GATC	2 cut(s)	400, 613
MboII	GAAGA	3 cut(s)	576, 601, 715
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	2 cut(s)	726, 927
MnlI	CCTC	7 cut(s)	38, 65, 185, 404, 466, 699, 846
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	5 cut(s)	251, 602, 711, 756, 937
MslI	CAYNNNNRTG	1 cut(s)	558
MspCI	CTTAAG	1 cut(s)	710
MspI	CCGG	1 cut(s)	643
MspR9I	CCNGG	1 cut(s)	558
Mva1269I	GAATGC	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	558
MwoI	GCNNNNNNNGC	1 cut(s)	377
NdeII	GATC	2 cut(s)	400, 613
NlaIII	CATG	3 cut(s)	163, 694, 868
NspI	RCATGY	1 cut(s)	694
OliI	CACNNNNGTG	1 cut(s)	558
PaeR7I	CTCGAG	1 cut(s)	280
PciSI	GCTCTTC	2 cut(s)	559, 584
PcsI	WCGNNNNNNNCGW	1 cut(s)	912
PctI	GAATGC	1 cut(s)	305
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	119
PflMI	CCANNNNNTGG	3 cut(s)	496, 672, 810
PinAI	ACCGGT	1 cut(s)	642
PkrI	GCNGC	6 cut(s)	146, 305, 370, 373, 664, 821
Ppu21I	YACGTR	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	556
PspXI	VCTCGAGB	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	400
RsaI	GTAC	4 cut(s)	268, 481, 677, 761
RsaNI	GTAC	4 cut(s)	267, 480, 676, 760
RseI	CAYNNNNRTG	1 cut(s)	558
SapI	GCTCTTC	2 cut(s)	559, 584
SaqAI	TTAA	5 cut(s)	251, 602, 711, 756, 937
SatI	GCNGC	6 cut(s)	145, 304, 369, 372, 663, 820
Sau3AI	GATC	2 cut(s)	400, 613
ScaI	AGTACT	1 cut(s)	481
ScrFI	CCNGG	1 cut(s)	558
SduI	GDGCHC	1 cut(s)	78
SfaNI	GCATC	3 cut(s)	153, 192, 790
SfcI	CTRYAG	2 cut(s)	43, 375
Sfr274I	CTCGAG	1 cut(s)	280
SlaI	CTCGAG	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	4 cut(s)	280, 524, 617, 710
SmoI	CTYRAG	4 cut(s)	280, 524, 617, 710
SnaBI	TACGTA	1 cut(s)	266
SpeI	ACTAGT	1 cut(s)	476
Sse9I	AATT	2 cut(s)	726, 927
SsiI	CCGC	2 cut(s)	144, 184
SspI	AATATT	1 cut(s)	438
SspMI	CTAG	7 cut(s)	314, 335, 404, 449, 459, 477, 627
StyD4I	CCNGG	1 cut(s)	556
TaaI	ACNGT	2 cut(s)	47, 176
TaiI	ACGT	2 cut(s)	268, 659
TaqI	TCGA	3 cut(s)	200, 281, 915
TasI	AATT	2 cut(s)	726, 927
TatI	WGTACW	2 cut(s)	479, 759
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	5 cut(s)	251, 602, 711, 756, 937
Tru9I	TTAA	5 cut(s)	251, 602, 711, 756, 937
TscAI	CASTG	2 cut(s)	52, 432
TseI	GCWGC	5 cut(s)	303, 368, 371, 662, 819
TspDTI	ATGAA	4 cut(s)	312, 404, 853, 906
TspRI	CASTG	2 cut(s)	52, 432
Van91I	CCANNNNNTGG	3 cut(s)	496, 672, 810
Vha464I	CTTAAG	1 cut(s)	710
VneI	GTGCAC	1 cut(s)	74
XapI	RAATTY	2 cut(s)	726, 927
XbaI	TCTAGA	1 cut(s)	626
XceI	RCATGY	1 cut(s)	694
XhoI	CTCGAG	1 cut(s)	280
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	7 cut(s)	314, 335, 404, 449, 459, 477, 627
ZrmI	AGTACT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.