Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003355

Physical Location & Seq

Genomic Coordinates Forward (+)

43959063 .. 43959389

Gene Structure 327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0320400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCATTCAGTGAGGGACTCCTCCCCAGCACACAAGTATACAAAGACATGATGAGAAGGCCGGCTAAAGACATGGGCGAGATCCAAACTCAGACCGAAATACAAATCAAGCTCGAGGAAATTGAAGTAGCGCAGGCTACAGGGGGCCAAAAGTACAACGGTGATCACATCACAGAAGCAAGAAGAATTGACTTGGGTCTAAGAAGACTAGGACAGGCAGGGGAATCAGAGTTGGCGATGAGAACATATTTTGAATTGGTGAAGATTTCAAAGCACGCAGACTTGATTCATAATCAACCGTCTCAAATCCTAGTCAATCAAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

108

Amino Acids

12.18

Weight (kDa)

5.89

Isoelectric Point (pI)

60.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04530
fragaria_vesca	FvH4_7g20910 FvH4_7g20910 FvH4_7g20910
malus_domestica	MD01G1118800.v1.1 MD01G1119200.v1.1 MD07G1187000.v1.1 MD07G1187300.v1.1 MD07G1187400.v1.1 MD07G1187800.v1.1
prunus_persica	Prupe.2G103600_v2.0.a1 Prupe.2G103700_v2.0.a1 Prupe.2G225800_v2.0.a1 Prupe.2G225900_v2.0.a1
pyrus_communis	pycom01g14580
rosa_chinensis	RchiOBHm_Chr1g0364911 RchiOBHm_Chr1g0365221 RchiOBHm_Chr1g0365281
rosa_laevigata	RLG00000027434 RLG00000027437 RLG00000027460
rosa_multiflora	Rmu_sc0004695.1_g000003 Rmu_sc0004695.1_g000005 Rmu_sc0008035.1_g000016
rosa_roxburghii	Rroxscaffold_4G00291360 Rroxscaffold_4G00291900
rosa_rugosa	Rorug01G0111400 Rorug01G0320400
rosa_samantha	Rh1AG329400 Rh1AG329600 Rh1BG102500 Rh1BG290800 Rh1BG291000 Rh1CG307700 Rh1DG322500
rosa_wichuraiana	Rw1G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	39
AclWI	GGATC	1 cut(s)	76
AfaI	GTAC	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	125, 254, 270
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	76
Ama87I	CYCGRG	1 cut(s)	113
AoxI	GGCC	2 cut(s)	59, 145
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	2 cut(s)	173, 271
AvaI	CYCGRG	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	211
BclI	TGATCA	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	306
BfaI	CTAG	2 cut(s)	209, 311
BfmI	CTRYAG	1 cut(s)	138
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	146
BoxI	GACNNNNGTC	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	211
Bse118I	RCCGGY	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	104
BseRI	GAGGAG	1 cut(s)	11
BseYI	CCCAGC	1 cut(s)	26
BshFI	GGCC	2 cut(s)	61, 147
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	30
BsmAI	GTCTC	1 cut(s)	306
BsmBI	CGTCTC	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	2 cut(s)	61, 147
BsoBI	CYCGRG	1 cut(s)	113
Bsp143I	GATC	2 cut(s)	81, 163
BspANI	GGCC	2 cut(s)	61, 147
BspCNI	CTCAG	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	146
BspPI	GGATC	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	61
BssAI	RCCGGY	1 cut(s)	61
BssMI	GATC	2 cut(s)	81, 163
BssNAI	GTATAC	1 cut(s)	40
Bst1107I	GTATAC	1 cut(s)	40
Bst4CI	ACNGT	2 cut(s)	161, 300
BstC8I	GCNNGC	3 cut(s)	63, 135, 276
BstDEI	CTNAG	2 cut(s)	90, 200
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	2 cut(s)	84, 166
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	2 cut(s)	81, 163
BstPAI	GACNNNNGTC	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	138
BstV2I	GAAGAC	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BstZ17I	GTATAC	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	61, 147
BtgZI	GCGATG	1 cut(s)	251
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	3 cut(s)	63, 135, 276
CfoI	GCGC	1 cut(s)	133
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	2 cut(s)	49, 73
CviJI	RGCY	5 cut(s)	61, 65, 112, 137, 147
CviKI_1	RGCY	5 cut(s)	61, 65, 112, 137, 147
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	2 cut(s)	90, 200
DpnI	GATC	2 cut(s)	83, 165
DpnII	GATC	2 cut(s)	81, 163
Eco88I	CYCGRG	1 cut(s)	113
Esp3I	CGTCTC	1 cut(s)	306
FaeI	CATG	2 cut(s)	52, 76
FaiI	YATR	5 cut(s)	40, 50, 74, 247, 291
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	2 cut(s)	48, 72
FbaI	TGATCA	1 cut(s)	163
FblI	GTMKAC	1 cut(s)	39
FspBI	CTAG	2 cut(s)	209, 311
GlaI	GCGC	1 cut(s)	132
GsaI	CCCAGC	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	61, 147
HapII	CCGG	1 cut(s)	62
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	2 cut(s)	52, 76
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	3 cut(s)	18, 224, 286
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	2 cut(s)	173, 271
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	2 cut(s)	93, 229
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	51
HpyCH4III	ACNGT	2 cut(s)	161, 300
HpyF3I	CTNAG	2 cut(s)	90, 200
Hsp92II	CATG	2 cut(s)	52, 76
HspAI	GCGC	1 cut(s)	131
KroI	GCCGGC	1 cut(s)	61
KroNI	GCCGGC	1 cut(s)	63
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	81, 163
LpnPI	CCDG	6 cut(s)	40, 75, 119, 126, 200, 204
MaeI	CTAG	2 cut(s)	209, 311
MalI	GATC	2 cut(s)	83, 165
MboI	GATC	2 cut(s)	81, 163
MboII	GAAGA	3 cut(s)	195, 216, 274
MflI	RGATCY	1 cut(s)	81
MluCI	AATT	3 cut(s)	120, 186, 254
MlyI	GAGTC	1 cut(s)	12
MnlI	CCTC	3 cut(s)	7, 32, 109
MroNI	GCCGGC	1 cut(s)	61
MseI	TTAA	1 cut(s)	325
MspI	CCGG	1 cut(s)	62
Mva1269I	GAATGC	1 cut(s)	5
NaeI	GCCGGC	1 cut(s)	63
NdeII	GATC	2 cut(s)	81, 163
NgoMIV	GCCGGC	1 cut(s)	61
NlaIII	CATG	2 cut(s)	52, 76
NlaIV	GGNNCC	1 cut(s)	146
PaeR7I	CTCGAG	1 cut(s)	113
PctI	GAATGC	1 cut(s)	5
PdiI	GCCGGC	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	224, 286
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PshAI	GACNNNNGTC	1 cut(s)	195
PspFI	CCCAGC	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	146
PspPI	GGNCC	1 cut(s)	145
PspXI	VCTCGAGB	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	81
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	325
Sau3AI	GATC	2 cut(s)	81, 163
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	1 cut(s)	12
SetI	ASST	2 cut(s)	114, 325
SfcI	CTRYAG	1 cut(s)	138
Sfr274I	CTCGAG	1 cut(s)	113
SlaI	CTCGAG	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	3 cut(s)	120, 186, 254
SspMI	CTAG	2 cut(s)	209, 311
TaaI	ACNGT	2 cut(s)	161, 300
TaqI	TCGA	1 cut(s)	114
TaqII	GACCGA	1 cut(s)	110
TasI	AATT	3 cut(s)	120, 186, 254
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	2 cut(s)	224, 286
Tru1I	TTAA	1 cut(s)	325
Tru9I	TTAA	1 cut(s)	325
TscAI	CASTG	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	278
TspRI	CASTG	1 cut(s)	16
XhoI	CTCGAG	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	39
XspI	CTAG	2 cut(s)	209, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.