Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002278

Physical Location & Seq

Genomic Coordinates Forward (+)

21100370 .. 21101059

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28456.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGATTTGGTTTCGACTGCCGTAGTATCGAGTTTAGTGATGGTTTTAGCTGTAGTTGTGGCTAGACACTGTAGCCGAAGATTGCGTGACAAGAACAAGAGATACCATCCTGTGGCCGGAACTGTCGTGCACCAACTTATCTACTTTTCTAGGATACACGATTACATGACCGAGCTTGCATGCAAGTACAACACTTACAGGATTCTCGACCTTTTCAAAGGTGCGGTTTACAAAGCAGATCCTGCAAATGTGGAATATGTGCTCAAAACAAACTTCATTAATTATGGCAAGTACATGAAACAACATATGTCAAACAATAGAACAGCAGAAGATGGGCAGACAAAGATCCCCATTAAAATGCTCGTTTTGTTGTCTTTGGGACTATGGCTTGAAGAGACTACAAGGCATTTCAAACTTAGTGCATCCGAGAATGGGCTCCAAAATGTGCATGAATGTAAGTTTAAAGATGAAGAGTACTTAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

162

Amino Acids

18.65

Weight (kDa)

9.2

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28456 FvH4_7g28458
prunus_persica	Prupe.2G285100_v2.0.a1 Prupe.3G021600_v2.0.a1
pyrus_communis	pycom11g06300
rosa_chinensis	RchiOBHm_Chr1g0359961 RchiOBHm_Chr1g0375421 RchiOBHm_Chr1g0375501
rosa_multiflora	Rmu_sc0001644.1_g000034 Rmu_sc0003191.1_g000013 Rmu_sc0004191.1_g000013 Rmu_sc0008215.1_g000003 Rmu_sc0031070.1_g000002
rosa_roxburghii	Rroxscaffold_4G00282770 Rroxscaffold_4G00282850 Rroxscaffold_4G00296750
rosa_samantha	Rh1AG287900 Rh1AG400700 Rh1AG401500 Rh1AG402300 Rh1AG403300 Rh1AG403400 Rh1AG403500 Rh1BG200800 Rh1BG253200 Rh1BG253300 Rh1BG363600 Rh1BG363700 Rh1BG366300 Rh1BG366400 Rh1BG366500 Rh1BG366900 Rh1BG367100 Rh1CG270600 Rh1CG270700 Rh1CG376900 Rh1CG379100 Rh1CG379200 Rh1CG379600 Rh1CG379900 Rh2BG274600 Rh2DG289700 Rh7BG011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	112
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	2 cut(s)	233, 340
AcoI	YGGCCR	1 cut(s)	114
AfaI	GTAC	3 cut(s)	188, 293, 476
AfiI	CCNNNNNNNGG	3 cut(s)	112, 116, 432
AgsI	TTSAA	3 cut(s)	217, 392, 412
AluBI	AGCT	2 cut(s)	50, 175
AluI	AGCT	2 cut(s)	50, 175
Alw21I	GWGCWC	2 cut(s)	132, 264
Alw26I	GTCTC	1 cut(s)	389
Alw44I	GTGCAC	1 cut(s)	128
AlwI	GGATC	2 cut(s)	233, 340
AlwNI	CAGNNNCTG	1 cut(s)	242
AoxI	GGCC	1 cut(s)	114
ApaLI	GTGCAC	1 cut(s)	128
AseI	ATTAAT	1 cut(s)	279
BaeGI	GKGCMC	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	438
Bbv12I	GWGCWC	2 cut(s)	132, 264
BccI	CCATC	3 cut(s)	34, 114, 326
BceAI	ACGGC	1 cut(s)	5
BciVI	GTATCC	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	2 cut(s)	63, 150
BfmI	CTRYAG	2 cut(s)	51, 70
BfuI	GTATCC	1 cut(s)	147
BmcAI	AGTACT	1 cut(s)	476
BmiI	GGNNCC	1 cut(s)	437
BmsI	GCATC	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 116, 432
BseGI	GGATG	2 cut(s)	106, 422
BseLI	CCNNNNNNNGG	3 cut(s)	112, 116, 432
BseSI	GKGCMC	1 cut(s)	132
BshFI	GGCC	1 cut(s)	116
BsiHKAI	GWGCWC	2 cut(s)	132, 264
BsiSI	CCGG	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	393
BslI	CCNNNNNNNGG	3 cut(s)	112, 116, 432
BsmAI	GTCTC	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	393
BsnI	GGCC	1 cut(s)	116
Bsp1286I	GDGCHC	3 cut(s)	132, 264, 438
Bsp143I	GATC	2 cut(s)	238, 345
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	437
BspPI	GGATC	2 cut(s)	233, 340
BssMI	GATC	2 cut(s)	238, 345
Bst4CI	ACNGT	2 cut(s)	71, 124
Bst6I	CTCTTC	2 cut(s)	387, 465
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	177, 181
BstDEI	CTNAG	1 cut(s)	416
BstF5I	GGATG	2 cut(s)	106, 422
BstKTI	GATC	2 cut(s)	241, 348
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	2 cut(s)	238, 345
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	183
BstSFI	CTRYAG	2 cut(s)	51, 70
BstSLI	GKGCMC	1 cut(s)	132
BstX2I	RGATCY	2 cut(s)	238, 345
BstYI	RGATCY	2 cut(s)	238, 345
BsuI	GTATCC	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	116
BtsCI	GGATG	2 cut(s)	106, 422
BtsIMutI	CAGTG	1 cut(s)	67
Cac8I	GCNNGC	2 cut(s)	177, 181
CaiI	CAGNNNCTG	1 cut(s)	242
Csp6I	GTAC	3 cut(s)	187, 292, 475
CviAII	CATG	4 cut(s)	166, 180, 295, 449
CviJI	RGCY	7 cut(s)	50, 62, 75, 116, 175, 388, 436
CviKI_1	RGCY	7 cut(s)	50, 62, 75, 116, 175, 388, 436
CviQI	GTAC	3 cut(s)	187, 292, 475
DdeI	CTNAG	1 cut(s)	416
DpnI	GATC	2 cut(s)	240, 347
DpnII	GATC	2 cut(s)	238, 345
DraI	TTTAAA	1 cut(s)	463
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	2 cut(s)	387, 465
EarI	CTCTTC	2 cut(s)	387, 465
Eco24I	GRGCYC	1 cut(s)	438
EcoT38I	GRGCYC	1 cut(s)	438
FaeI	CATG	4 cut(s)	169, 183, 298, 452
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	4 cut(s)	165, 179, 294, 448
FauNDI	CATATG	1 cut(s)	306
FokI	GGATG	2 cut(s)	93, 409
FriOI	GRGCYC	1 cut(s)	438
FspBI	CTAG	2 cut(s)	63, 150
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	117
Hin1II	CATG	4 cut(s)	169, 183, 298, 452
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	117
Hpy166II	GTNNAC	2 cut(s)	130, 229
Hpy188I	TCNGA	1 cut(s)	427
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	2 cut(s)	130, 229
HpyCH4III	ACNGT	2 cut(s)	71, 124
HpyCH4V	TGCA	6 cut(s)	130, 179, 183, 245, 422, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	1 cut(s)	416
Hsp92II	CATG	4 cut(s)	169, 183, 298, 452
Kzo9I	GATC	2 cut(s)	238, 345
LmnI	GCTCC	1 cut(s)	441
LpnPI	CCDG	4 cut(s)	123, 130, 184, 255
LweI	GCATC	1 cut(s)	431
MaeI	CTAG	2 cut(s)	63, 150
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	2 cut(s)	240, 347
MboI	GATC	2 cut(s)	238, 345
MboII	GAAGA	4 cut(s)	90, 341, 404, 482
MflI	RGATCY	2 cut(s)	238, 345
MhlI	GDGCHC	3 cut(s)	132, 264, 438
MluCI	AATT	1 cut(s)	280
MseI	TTAA	4 cut(s)	279, 354, 462, 479
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	242
NdeI	CATATG	1 cut(s)	306
NdeII	GATC	2 cut(s)	238, 345
NlaIII	CATG	4 cut(s)	169, 183, 298, 452
NlaIV	GGNNCC	1 cut(s)	437
NmuCI	GTSAC	1 cut(s)	86
NspI	RCATGY	1 cut(s)	183
PaeI	GCATGC	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	202
PflMI	CCANNNNNTGG	1 cut(s)	112
PshBI	ATTAAT	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	437
PsrI	GAACNNNNNNTAC	2 cut(s)	86, 118
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	2 cut(s)	238, 345
RsaI	GTAC	3 cut(s)	188, 293, 476
RsaNI	GTAC	3 cut(s)	187, 292, 475
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	4 cut(s)	279, 354, 462, 479
Sau3AI	GATC	2 cut(s)	238, 345
ScaI	AGTACT	1 cut(s)	476
SduI	GDGCHC	3 cut(s)	132, 264, 438
SetI	ASST	4 cut(s)	52, 177, 213, 223
SfaNI	GCATC	1 cut(s)	431
SfcI	CTRYAG	2 cut(s)	51, 70
SmiMI	CAYNNNNRTG	1 cut(s)	356
SphI	GCATGC	1 cut(s)	183
Sse9I	AATT	1 cut(s)	280
SsiI	CCGC	1 cut(s)	224
SspMI	CTAG	2 cut(s)	63, 150
TaaI	ACNGT	2 cut(s)	71, 124
TaqI	TCGA	3 cut(s)	14, 29, 207
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	1 cut(s)	280
TatI	WGTACW	3 cut(s)	186, 291, 474
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	4 cut(s)	279, 354, 462, 479
Tru9I	TTAA	4 cut(s)	279, 354, 462, 479
TscAI	CASTG	1 cut(s)	74
TseFI	GTSAC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	4 cut(s)	265, 311, 465, 483
TspRI	CASTG	1 cut(s)	74
Van91I	CCANNNNNTGG	1 cut(s)	112
VneI	GTGCAC	1 cut(s)	128
VspI	ATTAAT	1 cut(s)	279
XceI	RCATGY	1 cut(s)	183
XspI	CTAG	2 cut(s)	63, 150
ZrmI	AGTACT	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.