Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004191.1

Orthogroup ID

OG0002278

Physical Location & Seq

Genomic Coordinates Forward (+)

38221 .. 38943

Gene Structure 723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004191.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atggattttctttccactcctttacctcccattgcaataggtttatgtgcagtacttgttttggcagtaatctttctgcggaagaagaccaagaaataccctcctgttgccggaactgtcatacaccaactgatcaatgtgtcaaggctgcaccattacatgactgagcttgcatgcaagtacaaaacttataggatgctcgacttgttcagatatgctgtctacactgtagatcctgcaaatgttgaatacattctcaaaacaaactttgcaaactatggcaaggtatgtaaaggatcatttgaagaggccgtggagagggttttgatccggcaggaggaggaggacatatttgtcttccaatttaaggagatggaggtgaagaatcgggttttctcggggggtccttggttctataacaactccatgctattgttggcagattacgacggagtttctgacctagaagcagcgctgctgcatctccttgaggtgtgggtggctgtgaaagggttgcggatagcgatgcagaatgagaaagccctaaccctaatcggacgagcactgggggactttgttcgagttgatcagggggcggtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

200

Amino Acids

22.77

Weight (kDa)

7.69

Isoelectric Point (pI)

27.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28456 FvH4_7g28458
prunus_persica	Prupe.2G285100_v2.0.a1 Prupe.3G021600_v2.0.a1
pyrus_communis	pycom11g06300
rosa_chinensis	RchiOBHm_Chr1g0359961 RchiOBHm_Chr1g0375421 RchiOBHm_Chr1g0375501
rosa_multiflora	Rmu_sc0001644.1_g000034 Rmu_sc0003191.1_g000013 Rmu_sc0004191.1_g000013 Rmu_sc0008215.1_g000003 Rmu_sc0031070.1_g000002
rosa_roxburghii	Rroxscaffold_4G00282770 Rroxscaffold_4G00282850 Rroxscaffold_4G00296750
rosa_samantha	Rh1AG287900 Rh1AG400700 Rh1AG401500 Rh1AG402300 Rh1AG403300 Rh1AG403400 Rh1AG403500 Rh1BG200800 Rh1BG253200 Rh1BG253300 Rh1BG363600 Rh1BG363700 Rh1BG366300 Rh1BG366400 Rh1BG366500 Rh1BG366900 Rh1BG367100 Rh1CG270600 Rh1CG270700 Rh1CG376900 Rh1CG379100 Rh1CG379200 Rh1CG379600 Rh1CG379900 Rh2BG274600 Rh2DG289700 Rh7BG011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
AccI	GTMKAC	1 cut(s)	222
AciI	CCGC	3 cut(s)	79, 517, 596
AclWI	GGATC	3 cut(s)	227, 304, 322
AfaI	GTAC	2 cut(s)	54, 182
AfeI	AGCGCT	1 cut(s)	474
AfiI	CCNNNNNNNGG	4 cut(s)	110, 318, 337, 367
AgsI	TTSAA	2 cut(s)	248, 305
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw21I	GWGCWC	1 cut(s)	565
AlwI	GGATC	3 cut(s)	227, 304, 322
Ama87I	CYCGRG	1 cut(s)	397
Aor51HI	AGCGCT	1 cut(s)	474
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	4 cut(s)	148, 470, 475, 478
Asp700I	GAANNNNTTC	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	1 cut(s)	404
AsuHPI	GGTGA	1 cut(s)	391
AvaI	CYCGRG	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	404
BbsI	GAAGAC	2 cut(s)	92, 349
Bbv12I	GWGCWC	1 cut(s)	565
BbvI	GCAGC	4 cut(s)	135, 462, 465, 482
BccI	CCATC	1 cut(s)	367
BceAI	ACGGC	1 cut(s)	296
BclI	TGATCA	2 cut(s)	132, 586
BfaI	CTAG	1 cut(s)	464
BfmI	CTRYAG	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	476
BisI	GCNGC	4 cut(s)	149, 471, 476, 479
BlsI	GCNGC	4 cut(s)	150, 472, 477, 480
BmcAI	AGTACT	1 cut(s)	54
Bme18I	GGWCC	1 cut(s)	404
BmeT110I	CYCGRG	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	404
BmiI	GGNNCC	1 cut(s)	405
BmrI	ACTGGG	1 cut(s)	575
BmsI	GCATC	3 cut(s)	186, 490, 516
BmuI	ACTGGG	1 cut(s)	575
BpiI	GAAGAC	2 cut(s)	92, 349
BpuEI	CTTGAG	1 cut(s)	509
BsaJI	CCNNGG	2 cut(s)	312, 407
Bsc4I	CCNNNNNNNGG	4 cut(s)	110, 318, 337, 367
Bse1I	ACTGG	1 cut(s)	570
Bse3DI	GCAATG	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	312, 407
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	4 cut(s)	110, 318, 337, 367
BseMI	GCAATG	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	570
BseRI	GAGGAG	2 cut(s)	353, 356
BseXI	GCAGC	4 cut(s)	135, 462, 465, 482
BsgI	GTGCAG	2 cut(s)	69, 134
BshFI	GGCC	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	565
BsiHKCI	CYCGRG	1 cut(s)	397
BsiSI	CCGG	2 cut(s)	111, 331
BslFI	GGGAC	1 cut(s)	584
BslI	CCNNNNNNNGG	4 cut(s)	110, 318, 337, 367
BsmFI	GGGAC	1 cut(s)	584
BsnI	GGCC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	397
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp143I	GATC	5 cut(s)	132, 232, 296, 327, 586
BspACI	CCGC	3 cut(s)	79, 517, 596
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	405
BspPI	GGATC	3 cut(s)	227, 304, 322
BsrDI	GCAATG	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	570
BssECI	CCNNGG	2 cut(s)	312, 407
BssMI	GATC	5 cut(s)	132, 232, 296, 327, 586
BssT1I	CCWWGG	1 cut(s)	407
Bst4CI	ACNGT	2 cut(s)	118, 229
Bst6I	CTCTTC	1 cut(s)	300
BstC8I	GCNNGC	2 cut(s)	171, 175
BstDEI	CTNAG	1 cut(s)	165
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	201
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	5 cut(s)	135, 235, 299, 330, 589
BstMBI	GATC	5 cut(s)	132, 232, 296, 327, 586
BstNSI	RCATGY	1 cut(s)	177
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	4 cut(s)	135, 462, 465, 482
BstV2I	GAAGAC	2 cut(s)	92, 349
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	311
BtgI	CCRYGG	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	539
BtsCI	GGATG	1 cut(s)	201
BtsIMutI	CAGTG	2 cut(s)	225, 563
Cac8I	GCNNGC	2 cut(s)	171, 175
CfoI	GCGC	1 cut(s)	475
Cfr13I	GGNCC	1 cut(s)	404
Csp6I	GTAC	2 cut(s)	53, 181
CviAII	CATG	3 cut(s)	160, 174, 427
CviJI	RGCY	5 cut(s)	148, 169, 311, 503, 542
CviKI_1	RGCY	5 cut(s)	148, 169, 311, 503, 542
CviQI	GTAC	2 cut(s)	53, 181
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	5 cut(s)	134, 234, 298, 329, 588
DpnII	GATC	5 cut(s)	132, 232, 296, 327, 586
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco130I	CCWWGG	1 cut(s)	407
Eco47I	GGWCC	1 cut(s)	404
Eco47III	AGCGCT	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	397
EcoO109I	RGGNCCY	1 cut(s)	404
EcoT14I	CCWWGG	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	407
FaeI	CATG	3 cut(s)	163, 177, 430
FaqI	GGGAC	1 cut(s)	584
FatI	CATG	3 cut(s)	159, 173, 426
FbaI	TGATCA	2 cut(s)	132, 586
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	4 cut(s)	149, 471, 476, 479
FokI	GGATG	1 cut(s)	208
Fsp4HI	GCNGC	4 cut(s)	149, 471, 476, 479
FspBI	CTAG	1 cut(s)	464
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	4 cut(s)	149, 471, 476, 479
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	2 cut(s)	111, 331
HhaI	GCGC	1 cut(s)	475
Hin1II	CATG	3 cut(s)	163, 177, 430
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HinfI	GANTC	1 cut(s)	385
HpaII	CCGG	2 cut(s)	111, 331
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	3 cut(s)	212, 460, 557
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	452
HpyCH4III	ACNGT	2 cut(s)	118, 229
HpyCH4V	TGCA	9 cut(s)	35, 50, 151, 173, 177, 239, 272, 481, 529
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	3 cut(s)	163, 177, 430
HspAI	GCGC	1 cut(s)	473
Ksp22I	TGATCA	2 cut(s)	132, 586
Kzo9I	GATC	5 cut(s)	132, 232, 296, 327, 586
LpnPI	CCDG	7 cut(s)	117, 124, 249, 320, 344, 551, 575
Lsp1109I	GCAGC	4 cut(s)	135, 462, 465, 482
LweI	GCATC	3 cut(s)	186, 490, 516
MaeI	CTAG	1 cut(s)	464
MalI	GATC	5 cut(s)	134, 234, 298, 329, 588
MboI	GATC	5 cut(s)	132, 232, 296, 327, 586
MboII	GAAGA	5 cut(s)	94, 97, 317, 349, 394
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	565
MluCI	AATT	1 cut(s)	362
MnlI	CCTC	9 cut(s)	36, 111, 301, 312, 331, 334, 337, 370, 484
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	1 cut(s)	366
MspI	CCGG	2 cut(s)	111, 331
NdeII	GATC	5 cut(s)	132, 232, 296, 327, 586
NlaIII	CATG	3 cut(s)	163, 177, 430
NlaIV	GGNNCC	1 cut(s)	405
NspI	RCATGY	1 cut(s)	177
PaeI	GCATGC	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	385
PkrI	GCNGC	4 cut(s)	150, 472, 477, 480
PpuMI	RGGWCCY	1 cut(s)	404
Psp5II	RGGWCCY	1 cut(s)	404
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	1 cut(s)	404
PspPPI	RGGWCCY	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	2 cut(s)	54, 182
RsaNI	GTAC	2 cut(s)	53, 181
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	4 cut(s)	149, 471, 476, 479
Sau3AI	GATC	5 cut(s)	132, 232, 296, 327, 586
Sau96I	GGNCC	1 cut(s)	404
ScaI	AGTACT	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	565
SetI	ASST	7 cut(s)	28, 43, 171, 288, 381, 465, 495
SfaNI	GCATC	3 cut(s)	186, 490, 516
SfcI	CTRYAG	1 cut(s)	228
SinI	GGWCC	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
SphI	GCATGC	1 cut(s)	177
Sse9I	AATT	1 cut(s)	362
SsiI	CCGC	3 cut(s)	79, 517, 596
SspMI	CTAG	1 cut(s)	464
StyI	CCWWGG	1 cut(s)	407
TaaI	ACNGT	2 cut(s)	118, 229
TaqI	TCGA	2 cut(s)	201, 580
TasI	AATT	1 cut(s)	362
TatI	WGTACW	2 cut(s)	52, 180
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	2 cut(s)	232, 570
TseI	GCWGC	4 cut(s)	148, 470, 475, 478
TspGWI	ACGGA	1 cut(s)	465
TspRI	CASTG	2 cut(s)	232, 570
VpaK11BI	GGWCC	1 cut(s)	404
XceI	RCATGY	1 cut(s)	177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	433
XmiI	GTMKAC	1 cut(s)	222
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	1 cut(s)	464
ZrmI	AGTACT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.