Prupe.3G021600_v2.0.a1

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0002278
Physical Location & Seq
Reverse (-)
1560625 .. 1561062
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G021600.1

Sequence Viewer

Length: 396 bp
ATGAGAGCTGTAATTTTGCTATCTGAGAAGTTAAGCACCGTCATCAAGCAAGCACCCTTATGGAATGAATTCACTTGCTGGAAGAAATTCCTCGAGTGTCATGGATTTTCTTTCCACTCCGATACCTCCCATAGCAATAAGTTTAGCAGTAATTTTAGCTACAATTATGATCAGTCCCATGCTAGAAGATTGGGTACTGAGAGCAAAAAGAGATACCATCCTGTTGTCACAAACTTCTTAAACACTCTAATGAACTTCTATAGGCTGCACGATTACATGACTGACTTTGGATACAAACACAAAACTTATAGGGCGCTTAACTTGTTCATAAATTATGTTATCACCACAGATCCTGCAAATGTTGAGTACATCCTCAAAAAAAACTTTGCAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

132

Amino Acids

15.61

Weight (kDa)

9.46

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 344
AcsI RAATTY 2 cut(s) 68, 86
AfaI GTAC 2 cut(s) 196, 368
AluBI AGCT 2 cut(s) 8, 159
AluI AGCT 2 cut(s) 8, 159
AlwI GGATC 1 cut(s) 344
AlwNI CAGNNNCTG 1 cut(s) 353
Ama87I CYCGRG 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 265
ApoI RAATTY 2 cut(s) 68, 86
Asp700I GAANNNNTTC 2 cut(s) 68, 86
AspLEI GCGC 1 cut(s) 316
AsuHPI GGTGA 1 cut(s) 334
AvaI CYCGRG 1 cut(s) 92
BarI GAAGNNNNNNTAC 2 cut(s) 178, 210
BbvI GCAGC 1 cut(s) 252
BccI CCATC 1 cut(s) 225
BciVI GTATCC 1 cut(s) 284
BclI TGATCA 1 cut(s) 169
BfaI CTAG 2 cut(s) 183, 394
BfmI CTRYAG 1 cut(s) 259
BfoI RGCGCY 1 cut(s) 317
BfuI GTATCC 1 cut(s) 284
BisI GCNGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 267
BmeT110I CYCGRG 1 cut(s) 92
BseGI GGATG 2 cut(s) 217, 369
BseMII CTCAG 2 cut(s) 15, 189
BseXI GCAGC 1 cut(s) 252
BsgI GTGCAG 1 cut(s) 251
BsiHKCI CYCGRG 1 cut(s) 92
BslFI GGGAC 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 160
BsoBI CYCGRG 1 cut(s) 92
Bsp143I GATC 2 cut(s) 169, 349
BspCNI CTCAG 2 cut(s) 16, 190
BspPI GGATC 1 cut(s) 344
BssMI GATC 2 cut(s) 169, 349
Bst4CI ACNGT 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 2 cut(s) 24, 198
BstF5I GGATG 2 cut(s) 217, 369
BstH2I RGCGCY 1 cut(s) 317
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 2 cut(s) 172, 352
BstMBI GATC 2 cut(s) 169, 349
BstSFI CTRYAG 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BsuI GTATCC 1 cut(s) 284
BtsCI GGATG 2 cut(s) 217, 369
Cac8I GCNNGC 1 cut(s) 51
CaiI CAGNNNCTG 1 cut(s) 353
CfoI GCGC 1 cut(s) 316
Csp6I GTAC 2 cut(s) 195, 367
CviAII CATG 3 cut(s) 101, 179, 277
CviJI RGCY 3 cut(s) 8, 159, 265
CviKI_1 RGCY 3 cut(s) 8, 159, 265
CviQI GTAC 2 cut(s) 195, 367
DdeI CTNAG 2 cut(s) 24, 198
DpnI GATC 2 cut(s) 171, 351
DpnII GATC 2 cut(s) 169, 349
Eco88I CYCGRG 1 cut(s) 92
EcoRI GAATTC 1 cut(s) 68
FaeI CATG 3 cut(s) 104, 182, 280
FaqI GGGAC 1 cut(s) 160
FatI CATG 3 cut(s) 100, 178, 276
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 266
FokI GGATG 2 cut(s) 204, 356
Fsp4HI GCNGC 1 cut(s) 266
FspBI CTAG 2 cut(s) 183, 394
GlaI GCGC 1 cut(s) 315
GluI GCNGC 1 cut(s) 266
HaeII RGCGCY 1 cut(s) 317
HhaI GCGC 1 cut(s) 316
Hin1II CATG 3 cut(s) 104, 182, 280
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HphI GGTGA 1 cut(s) 334
Hpy188I TCNGA 2 cut(s) 25, 121
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 3 cut(s) 268, 356, 389
HpyF3I CTNAG 2 cut(s) 24, 198
Hsp92II CATG 3 cut(s) 104, 182, 280
HspAI GCGC 1 cut(s) 314
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 2 cut(s) 169, 349
LpnPI CCDG 3 cut(s) 64, 234, 366
Lsp1109I GCAGC 1 cut(s) 252
MaeI CTAG 2 cut(s) 183, 394
MaeIII GTNAC 1 cut(s) 226
MalI GATC 2 cut(s) 171, 351
MboI GATC 2 cut(s) 169, 349
MboII GAAGA 2 cut(s) 94, 198
MflI RGATCY 1 cut(s) 349
MluCI AATT 6 cut(s) 12, 68, 86, 151, 163, 331
MnlI CCTC 3 cut(s) 101, 136, 383
MroXI GAANNNNTTC 2 cut(s) 68, 86
MseI TTAA 3 cut(s) 32, 239, 318
MslI CAYNNNNRTG 2 cut(s) 58, 248
NdeII GATC 2 cut(s) 169, 349
NlaIII CATG 3 cut(s) 104, 182, 280
NmuCI GTSAC 1 cut(s) 226
PaeR7I CTCGAG 1 cut(s) 92
PdmI GAANNNNTTC 2 cut(s) 68, 86
PkrI GCNGC 1 cut(s) 267
PspXI VCTCGAGB 1 cut(s) 92
PstNI CAGNNNCTG 1 cut(s) 353
PsuI RGATCY 1 cut(s) 349
RsaI GTAC 2 cut(s) 196, 368
RsaNI GTAC 2 cut(s) 195, 367
RseI CAYNNNNRTG 2 cut(s) 58, 248
SaqAI TTAA 3 cut(s) 32, 239, 318
SatI GCNGC 1 cut(s) 266
Sau3AI GATC 2 cut(s) 169, 349
SetI ASST 3 cut(s) 10, 128, 161
SfcI CTRYAG 1 cut(s) 259
Sfr274I CTCGAG 1 cut(s) 92
SlaI CTCGAG 1 cut(s) 92
SmiMI CAYNNNNRTG 2 cut(s) 58, 248
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 6 cut(s) 12, 68, 86, 151, 163, 331
SspMI CTAG 2 cut(s) 183, 394
TaaI ACNGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 93
TasI AATT 6 cut(s) 12, 68, 86, 151, 163, 331
TatI WGTACW 1 cut(s) 366
Tru1I TTAA 3 cut(s) 32, 239, 318
Tru9I TTAA 3 cut(s) 32, 239, 318
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 3 cut(s) 81, 266, 316
XapI RAATTY 2 cut(s) 68, 86
XhoI CTCGAG 1 cut(s) 92
XmnI GAANNNNTTC 2 cut(s) 68, 86
XspI CTAG 2 cut(s) 183, 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.