Rh1CG379100

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002278
Physical Location & Seq
Forward (+)
64811874 .. 64819088
7215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG379100.1

Sequence Viewer

Length: 447 bp
ATGGATTTTCTTTCCACTGCTTTACCACCCATAGCAATAAGTTTAGCTGTAATACTCTTGGCCGTTATTTTTTGGCCGGAGAAGAACAAGAGGAACCCTCCTGTTGCCGGAACTGTCTTCCACCAAGTCATCAATTTCCCAAGGCTGCATCATTACCACACTGAGCTTGCATGCAAGTACAAAACTTACAGGATTCTTGACTTGTTCAAACATGCTGTCTACACAGTAGATCCTGCAAATGTGCAATACATACTCAAAACAAATGTTGCAAACTATGGCAAGATCAACTCAACAACTTGTGGTCAACAACTTGTACTCAACAACTTCTTGTTGATGACCATTATTGATTTGCTAAATCAAGGTTCAGGCTCAACAACACCAATTGTAATAAAATCATCCTCTGCTTACAAAACGAAAGGAAATACGTACTTGGACATCATATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

148

Amino Acids

16.55

Weight (kDa)

9.39

Isoelectric Point (pI)

22.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 219
AclWI GGATC 1 cut(s) 224
AcoI YGGCCR 2 cut(s) 60, 74
AfaI GTAC 3 cut(s) 179, 315, 428
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 1 cut(s) 208
AluBI AGCT 2 cut(s) 47, 166
AluI AGCT 2 cut(s) 47, 166
AlwI GGATC 1 cut(s) 224
AoxI GGCC 2 cut(s) 60, 74
ApeKI GCWGC 1 cut(s) 145
ArsI GACNNNNNNTTYG 2 cut(s) 201, 233
BbsI GAAGAC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 132
BceAI ACGGC 1 cut(s) 47
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 95
BmsI GCATC 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 109
BplI GAGNNNNNCTC 2 cut(s) 82, 114
BsaAI YACGTR 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 1 cut(s) 395
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 132
BshFI GGCC 2 cut(s) 62, 76
BsiSI CCGG 2 cut(s) 77, 108
BslI CCNNNNNNNGG 1 cut(s) 107
BsnI GGCC 2 cut(s) 62, 76
Bsp143I GATC 2 cut(s) 229, 282
BspANI GGCC 2 cut(s) 62, 76
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 95
BspPI GGATC 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 2 cut(s) 229, 282
BssT1I CCWWGG 1 cut(s) 140
Bst4CI ACNGT 2 cut(s) 115, 226
BstBAI YACGTR 1 cut(s) 426
BstC8I GCNNGC 2 cut(s) 168, 172
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 395
BstKTI GATC 2 cut(s) 232, 285
BstMBI GATC 2 cut(s) 229, 282
BstNSI RCATGY 2 cut(s) 174, 215
BstSNI TACGTA 1 cut(s) 426
BstV1I GCAGC 1 cut(s) 132
BstV2I GAAGAC 1 cut(s) 109
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuRI GGCC 2 cut(s) 62, 76
BtsCI GGATG 1 cut(s) 395
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 2 cut(s) 15, 159
Cac8I GCNNGC 2 cut(s) 168, 172
Csp6I GTAC 3 cut(s) 178, 314, 427
CviAII CATG 2 cut(s) 171, 212
CviJI RGCY 6 cut(s) 47, 62, 76, 145, 166, 369
CviKI_1 RGCY 6 cut(s) 47, 62, 76, 145, 166, 369
CviQI GTAC 3 cut(s) 178, 314, 427
DdeI CTNAG 1 cut(s) 162
DpnI GATC 2 cut(s) 231, 284
DpnII GATC 2 cut(s) 229, 282
EaeI YGGCCR 2 cut(s) 60, 74
Eco105I TACGTA 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 2 cut(s) 174, 215
FaiI YATR 7 cut(s) 32, 172, 213, 251, 276, 440, 445
FatI CATG 2 cut(s) 170, 211
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 146
FokI GGATG 1 cut(s) 382
Fsp4HI GCNGC 1 cut(s) 146
GluI GCNGC 1 cut(s) 146
HaeIII GGCC 2 cut(s) 62, 76
HapII CCGG 2 cut(s) 77, 108
Hin1II CATG 2 cut(s) 174, 215
HincII GTYRAC 1 cut(s) 305
HindII GTYRAC 1 cut(s) 305
HinfI GANTC 1 cut(s) 193
HpaII CCGG 2 cut(s) 77, 108
Hpy166II GTNNAC 2 cut(s) 220, 305
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 2 cut(s) 220, 305
HpyCH4III ACNGT 2 cut(s) 115, 226
HpyCH4IV ACGT 1 cut(s) 425
HpyCH4V TGCA 6 cut(s) 148, 170, 174, 236, 244, 269
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 425
Hsp92II CATG 2 cut(s) 174, 215
Kzo9I GATC 2 cut(s) 229, 282
LpnPI CCDG 6 cut(s) 90, 114, 121, 175, 246, 351
Lsp1109I GCAGC 1 cut(s) 132
LweI GCATC 1 cut(s) 157
MaeII ACGT 1 cut(s) 425
MalI GATC 2 cut(s) 231, 284
MboI GATC 2 cut(s) 229, 282
MboII GAAGA 2 cut(s) 94, 109
MfeI CAATTG 1 cut(s) 381
MflI RGATCY 1 cut(s) 229
MluCI AATT 2 cut(s) 133, 381
MnlI CCTC 3 cut(s) 84, 108, 409
MspI CCGG 2 cut(s) 77, 108
MunI CAATTG 1 cut(s) 381
NdeII GATC 2 cut(s) 229, 282
NlaIII CATG 2 cut(s) 174, 215
NlaIV GGNNCC 1 cut(s) 95
NspI RCATGY 2 cut(s) 174, 215
PaeI GCATGC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 1 cut(s) 147
Ppu21I YACGTR 1 cut(s) 426
PspN4I GGNNCC 1 cut(s) 95
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 3 cut(s) 179, 315, 428
RsaNI GTAC 3 cut(s) 178, 314, 427
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 2 cut(s) 229, 282
SetI ASST 4 cut(s) 49, 168, 364, 428
SfaNI GCATC 1 cut(s) 157
SnaBI TACGTA 1 cut(s) 426
SphI GCATGC 1 cut(s) 174
Sse9I AATT 2 cut(s) 133, 381
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 2 cut(s) 115, 226
TaiI ACGT 1 cut(s) 428
TasI AATT 2 cut(s) 133, 381
TatI WGTACW 2 cut(s) 177, 313
TfiI GAWTC 1 cut(s) 193
TscAI CASTG 2 cut(s) 22, 166
TseI GCWGC 1 cut(s) 145
TspRI CASTG 2 cut(s) 22, 166
XceI RCATGY 2 cut(s) 174, 215
XmiI GTMKAC 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.