Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002278

Physical Location & Seq

Genomic Coordinates Forward (+)

62737185 .. 62744027

Gene Structure 6843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG400700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCATCTGTTCCTATGTCTAGTTCTAACTTCATCATCATCTTCAATATCCTACAAGTATATGTTGGTCATGGATTTTCTTTCCACTCCTTTACCTCCCGTTGCAATAAGTTTAGCAGTAATATTCATTTTAGCAGTGTTTTCTCTGCGGAAGAAGAACAAGAGATACCCTCCAGTTGCCGGAACTGTCTTTCACCAACTGATCAACGCCCGCAAGGTGCACCATTATATGACTGAGCTTGCATGCAAGTACAGAACTTACAGGGTACTTGGCTTGTTCAGATACACCGTCTACACAGCAGATCCAGTAAATATTGAATACATGCTCAAAACAAATGTCGCCAACTACTGCAAGGGTAGTCGAAAATTGGGAATCAAAAGAGAAGCAGCGACAGCAGCGAGCAACTCCACCACTTTGGCACCGGTTACGGGGAAGAAAGAGAGAAAAGACACAAAGCGAGGGAATTTCACACAGAATGCTTGCAAAAGGAAAGGGTTTTTCGCGGTGGCTCGGGCTTCAAAACAGAACACCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

178

Amino Acids

20.07

Weight (kDa)

10.23

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28456 FvH4_7g28458
prunus_persica	Prupe.2G285100_v2.0.a1 Prupe.3G021600_v2.0.a1
pyrus_communis	pycom11g06300
rosa_chinensis	RchiOBHm_Chr1g0359961 RchiOBHm_Chr1g0375421 RchiOBHm_Chr1g0375501
rosa_multiflora	Rmu_sc0001644.1_g000034 Rmu_sc0003191.1_g000013 Rmu_sc0004191.1_g000013 Rmu_sc0008215.1_g000003 Rmu_sc0031070.1_g000002
rosa_roxburghii	Rroxscaffold_4G00282770 Rroxscaffold_4G00282850 Rroxscaffold_4G00296750
rosa_samantha	Rh1AG287900 Rh1AG400700 Rh1AG401500 Rh1AG402300 Rh1AG403300 Rh1AG403400 Rh1AG403500 Rh1BG200800 Rh1BG253200 Rh1BG253300 Rh1BG363600 Rh1BG363700 Rh1BG366300 Rh1BG366400 Rh1BG366500 Rh1BG366900 Rh1BG367100 Rh1CG270600 Rh1CG270700 Rh1CG376900 Rh1CG379100 Rh1CG379200 Rh1CG379600 Rh1CG379900 Rh2BG274600 Rh2DG289700 Rh7BG011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	418
AccI	GTMKAC	1 cut(s)	291
AccII	CGCG	1 cut(s)	503
AciI	CCGC	3 cut(s)	148, 211, 503
AclWI	GGATC	1 cut(s)	296
AcsI	RAATTY	1 cut(s)	463
AfaI	GTAC	2 cut(s)	251, 267
AfiI	CCNNNNNNNGG	2 cut(s)	179, 428
AgeI	ACCGGT	1 cut(s)	421
AgsI	TTSAA	3 cut(s)	45, 317, 519
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
Alw21I	GWGCWC	1 cut(s)	222
Alw44I	GTGCAC	1 cut(s)	218
AlwI	GGATC	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	510
ApaLI	GTGCAC	1 cut(s)	218
ApeKI	GCWGC	2 cut(s)	386, 395
ApoI	RAATTY	1 cut(s)	463
ArsI	GACNNNNNNTTYG	2 cut(s)	321, 353
AsiGI	ACCGGT	1 cut(s)	421
AsuHPI	GGTGA	1 cut(s)	185
AvaI	CYCGRG	1 cut(s)	510
BaeGI	GKGCMC	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	418
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	398, 407
BclI	TGATCA	1 cut(s)	201
BfaI	CTAG	1 cut(s)	20
BisI	GCNGC	2 cut(s)	387, 396
BlsI	GCNGC	2 cut(s)	388, 397
BmeT110I	CYCGRG	1 cut(s)	510
BmiI	GGNNCC	1 cut(s)	420
BmsI	GCATC	1 cut(s)	13
BplI	GAGNNNNNCTC	2 cut(s)	154, 186
BpmI	CTGGAG	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 428
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	2 cut(s)	173, 305
BseLI	CCNNNNNNNGG	2 cut(s)	179, 428
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	2 cut(s)	173, 305
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	2 cut(s)	398, 407
Bsh1236I	CGCG	1 cut(s)	503
BshNI	GGYRCC	1 cut(s)	418
BshTI	ACCGGT	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	510
BsiSI	CCGG	2 cut(s)	180, 422
BslI	CCNNNNNNNGG	2 cut(s)	179, 428
BsmI	GAATGC	1 cut(s)	481
BsoBI	CYCGRG	1 cut(s)	510
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	201, 301
BspACI	CCGC	3 cut(s)	148, 211, 503
BspCNI	CTCAG	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	503
BspLI	GGNNCC	1 cut(s)	420
BspPI	GGATC	1 cut(s)	296
BspT107I	GGYRCC	1 cut(s)	418
BsrFI	RCCGGY	1 cut(s)	421
BsrI	ACTGG	2 cut(s)	173, 305
BssAI	RCCGGY	1 cut(s)	421
BssMI	GATC	2 cut(s)	201, 301
Bst4CI	ACNGT	2 cut(s)	187, 289
BstC8I	GCNNGC	5 cut(s)	211, 240, 244, 400, 481
BstDEI	CTNAG	1 cut(s)	234
BstFNI	CGCG	1 cut(s)	503
BstKTI	GATC	2 cut(s)	204, 304
BstMBI	GATC	2 cut(s)	201, 301
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 395
BstNSI	RCATGY	2 cut(s)	246, 325
BstSLI	GKGCMC	1 cut(s)	222
BstUI	CGCG	1 cut(s)	503
BstV1I	GCAGC	2 cut(s)	398, 407
BstX2I	RGATCY	1 cut(s)	301
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	301
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	5 cut(s)	211, 240, 244, 400, 481
Cfr10I	RCCGGY	1 cut(s)	421
Csp6I	GTAC	2 cut(s)	250, 266
CspAI	ACCGGT	1 cut(s)	421
CviAII	CATG	3 cut(s)	70, 243, 322
CviJI	RGCY	4 cut(s)	238, 273, 509, 515
CviKI_1	RGCY	4 cut(s)	238, 273, 509, 515
CviQI	GTAC	2 cut(s)	250, 266
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	2 cut(s)	203, 303
DpnII	GATC	2 cut(s)	201, 301
Eco88I	CYCGRG	1 cut(s)	510
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	3 cut(s)	73, 246, 325
FatI	CATG	3 cut(s)	69, 242, 321
FauI	CCCGC	1 cut(s)	218
FbaI	TGATCA	1 cut(s)	201
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	2 cut(s)	387, 396
Fsp4HI	GCNGC	2 cut(s)	387, 396
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	2 cut(s)	387, 396
GsuI	CTGGAG	1 cut(s)	156
HapII	CCGG	2 cut(s)	180, 422
Hin1II	CATG	3 cut(s)	73, 246, 325
HinfI	GANTC	1 cut(s)	372
HpaII	CCGG	2 cut(s)	180, 422
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	2 cut(s)	220, 292
Hpy188I	TCNGA	1 cut(s)	281
Hpy8I	GTNNAC	2 cut(s)	220, 292
HpyCH4III	ACNGT	2 cut(s)	187, 289
HpyCH4V	TGCA	7 cut(s)	4, 104, 220, 242, 246, 351, 483
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 395
HpyF3I	CTNAG	1 cut(s)	234
Hsp92II	CATG	3 cut(s)	73, 246, 325
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	2 cut(s)	201, 301
LpnPI	CCDG	5 cut(s)	186, 193, 247, 318, 435
Lsp1109I	GCAGC	2 cut(s)	398, 407
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	2 cut(s)	203, 303
MboI	GATC	2 cut(s)	201, 301
MboII	GAAGA	4 cut(s)	33, 163, 166, 445
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	2 cut(s)	365, 463
MnlI	CCTC	3 cut(s)	105, 180, 452
Mph1103I	ATGCAT	1 cut(s)	6
MspI	CCGG	2 cut(s)	180, 422
Mva1269I	GAATGC	1 cut(s)	481
MvnI	CGCG	1 cut(s)	503
MwoI	GCNNNNNNNGC	2 cut(s)	392, 395
NdeII	GATC	2 cut(s)	201, 301
NlaIII	CATG	3 cut(s)	73, 246, 325
NlaIV	GGNNCC	1 cut(s)	420
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	246, 325
PaeI	GCATGC	1 cut(s)	246
PctI	GAATGC	1 cut(s)	481
PfeI	GAWTC	1 cut(s)	372
PinAI	ACCGGT	1 cut(s)	421
PkrI	GCNGC	2 cut(s)	388, 397
PspN4I	GGNNCC	1 cut(s)	420
PsrI	GAACNNNNNNTAC	2 cut(s)	149, 181
PsuI	RGATCY	1 cut(s)	301
RsaI	GTAC	2 cut(s)	251, 267
RsaNI	GTAC	2 cut(s)	250, 266
SatI	GCNGC	2 cut(s)	387, 396
Sau3AI	GATC	2 cut(s)	201, 301
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	3 cut(s)	97, 219, 240
SfaNI	GCATC	1 cut(s)	13
SphI	GCATGC	1 cut(s)	246
Sse9I	AATT	2 cut(s)	365, 463
SsiI	CCGC	3 cut(s)	148, 211, 503
SspI	AATATT	2 cut(s)	123, 313
SspMI	CTAG	1 cut(s)	20
TaaI	ACNGT	2 cut(s)	187, 289
TaqI	TCGA	1 cut(s)	361
TasI	AATT	2 cut(s)	365, 463
TatI	WGTACW	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	372
TscAI	CASTG	1 cut(s)	141
TseI	GCWGC	2 cut(s)	386, 395
TspDTI	ATGAA	2 cut(s)	21, 115
TspRI	CASTG	1 cut(s)	141
VneI	GTGCAC	1 cut(s)	218
XapI	RAATTY	1 cut(s)	463
XceI	RCATGY	2 cut(s)	246, 325
XmiI	GTMKAC	1 cut(s)	291
XspI	CTAG	1 cut(s)	20
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.