Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002278

Physical Location & Seq

Genomic Coordinates Forward (+)

63026332 .. 63031933

Gene Structure 5602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG403300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGATTTTGCTTCCACTGCCGTAGCATTAAGTTTCATATTAGTTTTAGCCATATATCTGGTTAGACTCCATGGCGGAAGATTACGTGATAAAAAAAAGAGATACCATCCTGTTGCTGGAACTGTAGTGCACCAACTGATCAACTTCCCTAGGCTGCACCATTACTTGACTGAGCTTGCATGCAAATACAAAACTTACAGGATGCTCGACTTATTCAAAGGTGTGGTTTACACAGCAGATCCTGCAAATGTGGAACATGTGCTCAAAACAAACTTCGCTAATTATGGCAAGAGGGTTGGTTCAGATATGTCTTTAGTCTCTTCTTCAAGACTTGAGTCCCCGACTTCTATGACCAGCTCTAGAACCAAATCGGCGGGGGAGGAATGCTTAGGATTCTGGCGAAGAGAGGAGCTTCAGCTTCATGGAGGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

144

Amino Acids

16.3

Weight (kDa)

9.69

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28456 FvH4_7g28458
prunus_persica	Prupe.2G285100_v2.0.a1 Prupe.3G021600_v2.0.a1
pyrus_communis	pycom11g06300
rosa_chinensis	RchiOBHm_Chr1g0359961 RchiOBHm_Chr1g0375421 RchiOBHm_Chr1g0375501
rosa_multiflora	Rmu_sc0001644.1_g000034 Rmu_sc0003191.1_g000013 Rmu_sc0004191.1_g000013 Rmu_sc0008215.1_g000003 Rmu_sc0031070.1_g000002
rosa_roxburghii	Rroxscaffold_4G00282770 Rroxscaffold_4G00282850 Rroxscaffold_4G00296750
rosa_samantha	Rh1AG287900 Rh1AG400700 Rh1AG401500 Rh1AG402300 Rh1AG403300 Rh1AG403400 Rh1AG403500 Rh1BG200800 Rh1BG253200 Rh1BG253300 Rh1BG363600 Rh1BG363700 Rh1BG366300 Rh1BG366400 Rh1BG366500 Rh1BG366900 Rh1BG367100 Rh1CG270600 Rh1CG270700 Rh1CG376900 Rh1CG379100 Rh1CG379200 Rh1CG379600 Rh1CG379900 Rh2BG274600 Rh2DG289700 Rh7BG011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	75, 374
AclWI	GGATC	1 cut(s)	233
AcuI	CTGAAG	1 cut(s)	398
AfiI	CCNNNNNNNGG	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	256
AgsI	TTSAA	2 cut(s)	217, 327
AluBI	AGCT	4 cut(s)	175, 357, 412, 418
AluI	AGCT	4 cut(s)	175, 357, 412, 418
Alw21I	GWGCWC	2 cut(s)	132, 264
Alw26I	GTCTC	1 cut(s)	322
Alw44I	GTGCAC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	233
AlwNI	CAGNNNCTG	1 cut(s)	242
ApaLI	GTGCAC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	154
AspA2I	CCTAGG	1 cut(s)	149
AvrII	CCTAGG	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	132
Bbv12I	GWGCWC	2 cut(s)	132, 264
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	1 cut(s)	114
BceAI	ACGGC	1 cut(s)	5
BclI	TGATCA	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	2 cut(s)	150, 360
BfmI	CTRYAG	1 cut(s)	123
BisI	GCNGC	1 cut(s)	155
BlnI	CCTAGG	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	156
BmsI	GCATC	1 cut(s)	192
BoxI	GACNNNNGTC	1 cut(s)	334
Bpu10I	CCTNAGC	1 cut(s)	388
BpuEI	CTTGAG	1 cut(s)	353
BsaAI	YACGTR	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	70, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	70, 149
BseGI	GGATG	2 cut(s)	106, 207
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	422
BseSI	GKGCMC	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	141
BsgI	GTGCAG	1 cut(s)	140
BsiHKAI	GWGCWC	2 cut(s)	132, 264
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	389
Bsp1286I	GDGCHC	2 cut(s)	132, 264
Bsp143I	GATC	2 cut(s)	138, 238
Bsp19I	CCATGG	1 cut(s)	70
BspACI	CCGC	2 cut(s)	75, 374
BspCNI	CTCAG	1 cut(s)	163
BspPI	GGATC	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	70, 149
BssMI	GATC	2 cut(s)	138, 238
BssT1I	CCWWGG	2 cut(s)	70, 149
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	2 cut(s)	325, 397
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	177, 181
BstDEI	CTNAG	2 cut(s)	171, 388
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	2 cut(s)	106, 207
BstKTI	GATC	2 cut(s)	141, 241
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	2 cut(s)	138, 238
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 242
BstNSI	RCATGY	2 cut(s)	183, 260
BstPAI	GACNNNNGTC	1 cut(s)	334
BstSFI	CTRYAG	1 cut(s)	123
BstSLI	GKGCMC	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	238
BstXI	CCANNNNNNTGG	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	238
BtgI	CCRYGG	1 cut(s)	70
BtsCI	GGATG	2 cut(s)	106, 207
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	2 cut(s)	177, 181
CaiI	CAGNNNCTG	1 cut(s)	242
CviAII	CATG	4 cut(s)	71, 180, 257, 422
CviJI	RGCY	6 cut(s)	50, 154, 175, 357, 412, 418
CviKI_1	RGCY	6 cut(s)	50, 154, 175, 357, 412, 418
DdeI	CTNAG	2 cut(s)	171, 388
DpnI	GATC	2 cut(s)	140, 240
DpnII	GATC	2 cut(s)	138, 238
Eam1104I	CTCTTC	2 cut(s)	325, 397
EarI	CTCTTC	2 cut(s)	325, 397
EciI	GGCGGA	1 cut(s)	90
Eco130I	CCWWGG	2 cut(s)	70, 149
Eco57I	CTGAAG	1 cut(s)	398
EcoT14I	CCWWGG	2 cut(s)	70, 149
ErhI	CCWWGG	2 cut(s)	70, 149
FaeI	CATG	4 cut(s)	74, 183, 260, 425
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	4 cut(s)	70, 179, 256, 421
FauI	CCCGC	1 cut(s)	367
FbaI	TGATCA	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	155
FokI	GGATG	2 cut(s)	93, 214
Fsp4HI	GCNGC	1 cut(s)	155
FspBI	CTAG	2 cut(s)	150, 360
GluI	GCNGC	1 cut(s)	155
Hin1II	CATG	4 cut(s)	74, 183, 260, 425
HinfI	GANTC	3 cut(s)	66, 335, 393
Hpy166II	GTNNAC	2 cut(s)	130, 229
Hpy188I	TCNGA	1 cut(s)	304
Hpy188III	TCNNGA	2 cut(s)	327, 360
Hpy8I	GTNNAC	2 cut(s)	130, 229
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	5 cut(s)	130, 157, 179, 183, 245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 242
HpyF3I	CTNAG	2 cut(s)	171, 388
HpySE526I	ACGT	1 cut(s)	85
Hsp92II	CATG	4 cut(s)	74, 183, 260, 425
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	138, 238
LmnI	GCTCC	1 cut(s)	409
LpnPI	CCDG	7 cut(s)	44, 102, 123, 184, 255, 367, 382
Lsp1109I	GCAGC	1 cut(s)	141
LweI	GCATC	1 cut(s)	192
MaeI	CTAG	2 cut(s)	150, 360
MaeII	ACGT	1 cut(s)	85
MalI	GATC	2 cut(s)	140, 240
MboI	GATC	2 cut(s)	138, 238
MboII	GAAGA	4 cut(s)	90, 312, 315, 414
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	2 cut(s)	132, 264
MluCI	AATT	1 cut(s)	280
MlyI	GAGTC	2 cut(s)	60, 344
MnlI	CCTC	4 cut(s)	285, 373, 400, 419
MseI	TTAA	1 cut(s)	29
Mva1269I	GAATGC	1 cut(s)	389
MwoI	GCNNNNNNNGC	2 cut(s)	17, 242
NcoI	CCATGG	1 cut(s)	70
NdeII	GATC	2 cut(s)	138, 238
NlaIII	CATG	4 cut(s)	74, 183, 260, 425
NspI	RCATGY	2 cut(s)	183, 260
PaeI	GCATGC	1 cut(s)	183
PciI	ACATGT	1 cut(s)	256
PctI	GAATGC	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	393
PkrI	GCNGC	1 cut(s)	156
PleI	GAGTC	2 cut(s)	60, 343
PpsI	GAGTC	2 cut(s)	60, 343
Ppu21I	YACGTR	1 cut(s)	86
PscI	ACATGT	1 cut(s)	256
PshAI	GACNNNNGTC	1 cut(s)	334
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	2 cut(s)	138, 238
SchI	GAGTC	2 cut(s)	60, 344
SduI	GDGCHC	2 cut(s)	132, 264
SetI	ASST	7 cut(s)	88, 177, 223, 359, 414, 420, 430
SfaNI	GCATC	1 cut(s)	192
SfcI	CTRYAG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
SphI	GCATGC	1 cut(s)	183
Sse9I	AATT	1 cut(s)	280
SsiI	CCGC	2 cut(s)	75, 374
SspMI	CTAG	2 cut(s)	150, 360
StyI	CCWWGG	2 cut(s)	70, 149
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	1 cut(s)	88
TaqI	TCGA	1 cut(s)	207
TasI	AATT	1 cut(s)	280
TfiI	GAWTC	1 cut(s)	393
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	1 cut(s)	22
TseI	GCWGC	1 cut(s)	154
TspDTI	ATGAA	2 cut(s)	25, 410
TspRI	CASTG	1 cut(s)	22
VneI	GTGCAC	1 cut(s)	128
XbaI	TCTAGA	1 cut(s)	359
XceI	RCATGY	2 cut(s)	183, 260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XmaJI	CCTAGG	1 cut(s)	149
XspI	CTAG	2 cut(s)	150, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.