Rh1BG253200

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002278
Physical Location & Seq
Reverse (-)
38198505 .. 38198819
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG253200.1

Sequence Viewer

Length: 315 bp
ATGGATTTTGCTTCCGCGGCGGTAGCATTGAGTTTAGCGTTGGTTTTAGTTGTAGTTGTGGTTAGACACCATACCCGAAGATTACGTGACAAGAACAAGAGATACCATCCTGTTGCCGGAACTGTCGTGCACCAACTTATCAACTTCCCTAGGCTACACCATTACATGACTGAGCTTGCAGACAAGTATTACACTTACAGGATGCTCGACTTCTTCAAAGGTGCGGCACAGCAGATCCTGCAAATGTTGAATATGTGCTCAAAACAAACTTCGCTAATTATGGCAAGGTATGATGTGTATTGCTTAAATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

104

Amino Acids

12.14

Weight (kDa)

9.74

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 17
AciI CCGC 4 cut(s) 15, 17, 20, 224
AclWI GGATC 1 cut(s) 229
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 2 cut(s) 217, 250
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
Alw21I GWGCWC 2 cut(s) 132, 260
Alw44I GTGCAC 1 cut(s) 128
AlwI GGATC 1 cut(s) 229
AlwNI CAGNNNCTG 1 cut(s) 238
ApaLI GTGCAC 1 cut(s) 128
AspA2I CCTAGG 1 cut(s) 149
AvrII CCTAGG 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 132
Bbv12I GWGCWC 2 cut(s) 132, 260
BccI CCATC 1 cut(s) 114
BfaI CTAG 1 cut(s) 150
BisI GCNGC 2 cut(s) 18, 225
BlnI CCTAGG 1 cut(s) 149
BlsI GCNGC 2 cut(s) 19, 226
BmsI GCATC 1 cut(s) 192
BsaAI YACGTR 1 cut(s) 86
BsaJI CCNNGG 2 cut(s) 15, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 15, 149
BseGI GGATG 2 cut(s) 106, 207
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMII CTCAG 1 cut(s) 162
BseSI GKGCMC 1 cut(s) 132
Bsh1236I CGCG 1 cut(s) 17
BsiHKAI GWGCWC 2 cut(s) 132, 260
BsiSI CCGG 1 cut(s) 117
BslI CCNNNNNNNGG 1 cut(s) 116
Bsp1286I GDGCHC 2 cut(s) 132, 260
Bsp143I GATC 1 cut(s) 234
BspACI CCGC 4 cut(s) 15, 17, 20, 224
BspCNI CTCAG 1 cut(s) 163
BspFNI CGCG 1 cut(s) 17
BspPI GGATC 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 15, 149
BssMI GATC 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 124
BstAPI GCANNNNNTGC 1 cut(s) 238
BstBAI YACGTR 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 171
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 2 cut(s) 106, 207
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 1 cut(s) 237
BstMBI GATC 1 cut(s) 234
BstMWI GCNNNNNNNGC 3 cut(s) 17, 23, 238
BstSLI GKGCMC 1 cut(s) 132
BstUI CGCG 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 2 cut(s) 106, 207
Cac8I GCNNGC 1 cut(s) 177
CaiI CAGNNNCTG 1 cut(s) 238
Cfr42I CCGCGG 1 cut(s) 18
CviAII CATG 1 cut(s) 166
CviJI RGCY 2 cut(s) 154, 175
CviKI_1 RGCY 2 cut(s) 154, 175
DdeI CTNAG 1 cut(s) 171
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 1 cut(s) 169
FaiI YATR 7 cut(s) 72, 167, 254, 281, 291, 311, 313
FatI CATG 1 cut(s) 165
Fnu4HI GCNGC 2 cut(s) 18, 225
FokI GGATG 2 cut(s) 93, 214
Fsp4HI GCNGC 2 cut(s) 18, 225
FspBI CTAG 1 cut(s) 150
GluI GCNGC 2 cut(s) 18, 225
HapII CCGG 1 cut(s) 117
Hin1II CATG 1 cut(s) 169
HpaII CCGG 1 cut(s) 117
Hpy166II GTNNAC 1 cut(s) 130
Hpy8I GTNNAC 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 3 cut(s) 130, 179, 241
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 23, 238
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 1 cut(s) 169
KspI CCGCGG 1 cut(s) 18
Kzo9I GATC 1 cut(s) 234
LpnPI CCDG 4 cut(s) 123, 130, 184, 251
LweI GCATC 1 cut(s) 192
MaeI CTAG 1 cut(s) 150
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 1 cut(s) 86
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 2 cut(s) 90, 205
MflI RGATCY 1 cut(s) 234
MhlI GDGCHC 2 cut(s) 132, 260
MluCI AATT 1 cut(s) 276
MseI TTAA 1 cut(s) 305
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 1 cut(s) 117
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 3 cut(s) 17, 23, 238
NdeII GATC 1 cut(s) 234
NlaIII CATG 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 86
PkrI GCNGC 2 cut(s) 19, 226
Ppu21I YACGTR 1 cut(s) 86
PsrI GAACNNNNNNTAC 2 cut(s) 86, 118
PstNI CAGNNNCTG 1 cut(s) 238
PsuI RGATCY 1 cut(s) 234
SacII CCGCGG 1 cut(s) 18
SaqAI TTAA 1 cut(s) 305
SatI GCNGC 2 cut(s) 18, 225
Sau3AI GATC 1 cut(s) 234
SduI GDGCHC 2 cut(s) 132, 260
SetI ASST 4 cut(s) 88, 177, 223, 290
SfaNI GCATC 1 cut(s) 192
Sfr303I CCGCGG 1 cut(s) 18
SgrBI CCGCGG 1 cut(s) 18
Sse9I AATT 1 cut(s) 276
SsiI CCGC 4 cut(s) 15, 17, 20, 224
SspMI CTAG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 1 cut(s) 88
TaqI TCGA 1 cut(s) 207
TasI AATT 1 cut(s) 276
TauI GCSGC 2 cut(s) 20, 227
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TseFI GTSAC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 86
VneI GTGCAC 1 cut(s) 128
XmaJI CCTAGG 1 cut(s) 149
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.