Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002278

Physical Location & Seq

Genomic Coordinates Reverse (-)

4830068 .. 4831042

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g06300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGATTTTCTTTCCACTCCCAATGCAATAAGTTTAGCTGTAGTAGTTTTAGCTATACTGGCGATCAGATCCTATGCCAGGAAAAGATTGCAACGCTCTGAGAAGACAAAGAGATACCCTCCTGTTGTCACAACCTTCTTACACACCCTCGTCAACTTCTACAGGTTGCACGATTTTATCACTGAGTTTGCATACAAACACAAAACTTTCAGGGCGCTTAACTTGTTCGTAAATTACGTTGTCACCGCCGATCCTGCAAATATTGAATACATTCTCAAAACAAACTTCGCAAATTATGGCAGGGGGTTGTACAATTACGACATTTTGACAGATGCTTTGGGTAATGGGATCTTCGCTGTGGATGGTGAAAAGTGGATACATCAAAGGAAGTTATCTAGCTACGAAATATCAACCAAAGTAGCTAAAGACTTCAGCAATGGAGTTTTCAAAACCAAAGCAGTAAAGCTTGCTGGGATAATTTCTAAAGCGGCAACCTGCGACCAAGTAATAGAGATCCAAGATTTGATTATGAAAGCGGGGTTAGATTCAGTCGTCAAGATTCTGCTTGGAATGGAAGTAGATACCATGTATGGGACAAATGAAGAAGGCACCCGGTTTGCCCATGCTTTCGATGAAGCAAACAAACTTACCCTGTATCGTTTTGTTGATTTCTCCTGGAAAATCAAACGGTTCTTCAACATTGGGTCAGAAGCAAAGCTGCGGAATGATATTAAACTGATGGATCGATCTTATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

253

Amino Acids

28.84

Weight (kDa)

9.43

Isoelectric Point (pI)

31.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28456 FvH4_7g28458
prunus_persica	Prupe.2G285100_v2.0.a1 Prupe.3G021600_v2.0.a1
pyrus_communis	pycom11g06300
rosa_chinensis	RchiOBHm_Chr1g0359961 RchiOBHm_Chr1g0375421 RchiOBHm_Chr1g0375501
rosa_multiflora	Rmu_sc0001644.1_g000034 Rmu_sc0003191.1_g000013 Rmu_sc0004191.1_g000013 Rmu_sc0008215.1_g000003 Rmu_sc0031070.1_g000002
rosa_roxburghii	Rroxscaffold_4G00282770 Rroxscaffold_4G00282850 Rroxscaffold_4G00296750
rosa_samantha	Rh1AG287900 Rh1AG400700 Rh1AG401500 Rh1AG402300 Rh1AG403300 Rh1AG403400 Rh1AG403500 Rh1BG200800 Rh1BG253200 Rh1BG253300 Rh1BG363600 Rh1BG363700 Rh1BG366300 Rh1BG366400 Rh1BG366500 Rh1BG366900 Rh1BG367100 Rh1CG270600 Rh1CG270700 Rh1CG376900 Rh1CG379100 Rh1CG379200 Rh1CG379600 Rh1CG379900 Rh2BG274600 Rh2DG289700 Rh7BG011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	757
Acc36I	ACCTGC	1 cut(s)	503
AccB1I	GGYRCC	1 cut(s)	608
AciI	CCGC	4 cut(s)	246, 488, 536, 721
AclWI	GGATC	5 cut(s)	63, 245, 356, 508, 750
AcuI	CTGAAG	1 cut(s)	415
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	78, 591
AgsI	TTSAA	3 cut(s)	266, 448, 697
AjnI	CCWGG	2 cut(s)	77, 674
AluBI	AGCT	6 cut(s)	38, 53, 399, 422, 466, 718
AluI	AGCT	6 cut(s)	38, 53, 399, 422, 466, 718
AlwI	GGATC	5 cut(s)	63, 245, 356, 508, 750
ApeKI	GCWGC	1 cut(s)	718
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
Asp700I	GAANNNNTTC	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	217
AsuC2I	CCSGG	1 cut(s)	613
AsuHPI	GGTGA	2 cut(s)	235, 377
BanI	GGYRCC	1 cut(s)	608
BbsI	GAAGAC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	705
BccI	CCATC	2 cut(s)	356, 733
BciT130I	CCWGG	2 cut(s)	79, 676
BciVI	GTATCC	1 cut(s)	369
BcnI	CCSGG	1 cut(s)	613
BfaI	CTAG	1 cut(s)	396
BfmI	CTRYAG	2 cut(s)	39, 160
BfoI	RGCGCY	1 cut(s)	218
BfuAI	ACCTGC	1 cut(s)	503
BfuI	GTATCC	1 cut(s)	369
BisI	GCNGC	2 cut(s)	489, 719
BlsI	GCNGC	2 cut(s)	490, 720
Bme1390I	CCNGG	3 cut(s)	79, 613, 676
BmiI	GGNNCC	1 cut(s)	610
BmrFI	CCNGG	3 cut(s)	79, 613, 676
BmsI	GCATC	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	110
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
BpuMI	CCSGG	1 cut(s)	613
Bsa29I	ATCGAT	1 cut(s)	745
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 591
Bse1I	ACTGG	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	442
BseBI	CCWGG	2 cut(s)	79, 676
BseCI	ATCGAT	1 cut(s)	745
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	2 cut(s)	78, 591
BseMI	GCAATG	1 cut(s)	442
BseMII	CTCAG	2 cut(s)	90, 174
BseNI	ACTGG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	705
BseYI	CCCAGC	1 cut(s)	470
BshNI	GGYRCC	1 cut(s)	608
BshVI	ATCGAT	1 cut(s)	745
BsiSI	CCGG	1 cut(s)	613
BslFI	GGGAC	1 cut(s)	607
BslI	CCNNNNNNNGG	2 cut(s)	78, 591
BsmFI	GGGAC	1 cut(s)	607
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	7 cut(s)	63, 68, 250, 348, 513, 742, 746
BspACI	CCGC	4 cut(s)	246, 488, 536, 721
BspCNI	CTCAG	2 cut(s)	91, 175
BspDI	ATCGAT	1 cut(s)	745
BspLI	GGNNCC	1 cut(s)	610
BspMI	ACCTGC	1 cut(s)	503
BspPI	GGATC	5 cut(s)	63, 245, 356, 508, 750
BspT107I	GGYRCC	1 cut(s)	608
BsrDI	GCAATG	1 cut(s)	442
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	63
BssMI	GATC	7 cut(s)	63, 68, 250, 348, 513, 742, 746
Bst2UI	CCWGG	2 cut(s)	79, 676
Bst4CI	ACNGT	1 cut(s)	690
BstAUI	TGTACA	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	2 cut(s)	99, 183
BstENI	CCTNNNNNAGG	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	367
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	7 cut(s)	66, 71, 253, 351, 516, 745, 749
BstMBI	GATC	7 cut(s)	63, 68, 250, 348, 513, 742, 746
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 254
BstNI	CCWGG	2 cut(s)	79, 676
BstSCI	CCNGG	3 cut(s)	77, 611, 674
BstSFI	CTRYAG	2 cut(s)	39, 160
BstV1I	GCAGC	1 cut(s)	705
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	3 cut(s)	68, 348, 513
BstYI	RGATCY	3 cut(s)	68, 348, 513
Bsu15I	ATCGAT	1 cut(s)	745
BsuI	GTATCC	1 cut(s)	369
BsuTUI	ATCGAT	1 cut(s)	745
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	503
Cac8I	GCNNGC	1 cut(s)	468
CfoI	GCGC	1 cut(s)	217
ClaI	ATCGAT	1 cut(s)	745
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	2 cut(s)	586, 623
CviJI	RGCY	6 cut(s)	38, 53, 399, 422, 466, 718
CviKI_1	RGCY	6 cut(s)	38, 53, 399, 422, 466, 718
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	2 cut(s)	99, 183
DpnI	GATC	7 cut(s)	65, 70, 252, 350, 515, 744, 748
DpnII	GATC	7 cut(s)	63, 68, 250, 348, 513, 742, 746
Eco57I	CTGAAG	1 cut(s)	415
EcoNI	CCTNNNNNAGG	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	77, 674
FaeI	CATG	2 cut(s)	589, 626
FaiI	YATR	9 cut(s)	56, 75, 193, 297, 530, 587, 591, 624, 757
FaqI	GGGAC	1 cut(s)	607
FatI	CATG	2 cut(s)	585, 622
FauI	CCCGC	1 cut(s)	529
Fnu4HI	GCNGC	2 cut(s)	489, 719
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	2 cut(s)	489, 719
FspBI	CTAG	1 cut(s)	396
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	2 cut(s)	489, 719
GsaI	CCCAGC	1 cut(s)	474
HaeII	RGCGCY	1 cut(s)	218
HapII	CCGG	1 cut(s)	613
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	2 cut(s)	589, 626
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	2 cut(s)	545, 559
HpaII	CCGG	1 cut(s)	613
HphI	GGTGA	2 cut(s)	235, 377
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	3 cut(s)	68, 100, 709
Hpy188III	TCNNGA	1 cut(s)	556
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	2 cut(s)	145, 599
HpyCH4III	ACNGT	1 cut(s)	690
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	5 cut(s)	26, 91, 169, 191, 257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 254
HpyF3I	CTNAG	2 cut(s)	99, 183
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	589, 626
HspAI	GCGC	1 cut(s)	215
Kzo9I	GATC	7 cut(s)	63, 68, 250, 348, 513, 742, 746
Lsp1109I	GCAGC	1 cut(s)	705
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	396
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	127, 241
MalI	GATC	7 cut(s)	65, 70, 252, 350, 515, 744, 748
MboI	GATC	7 cut(s)	63, 68, 250, 348, 513, 742, 746
MboII	GAAGA	4 cut(s)	115, 343, 614, 685
MflI	RGATCY	3 cut(s)	68, 348, 513
MluCI	AATT	4 cut(s)	232, 292, 313, 477
MnlI	CCTC	2 cut(s)	129, 158
MroXI	GAANNNNTTC	1 cut(s)	270
MseI	TTAA	2 cut(s)	219, 732
MspI	CCGG	1 cut(s)	613
MspR9I	CCNGG	3 cut(s)	79, 613, 676
MvaI	CCWGG	2 cut(s)	79, 676
MwoI	GCNNNNNNNGC	2 cut(s)	59, 254
NciI	CCSGG	1 cut(s)	613
NdeII	GATC	7 cut(s)	63, 68, 250, 348, 513, 742, 746
NlaIII	CATG	2 cut(s)	589, 626
NlaIV	GGNNCC	1 cut(s)	610
NmuCI	GTSAC	2 cut(s)	127, 241
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	545, 559
PfoI	TCCNGGA	1 cut(s)	674
PkrI	GCNGC	2 cut(s)	490, 720
PsiI	TTATAA	1 cut(s)	757
Psp6I	CCWGG	2 cut(s)	77, 674
PspFI	CCCAGC	1 cut(s)	470
PspGI	CCWGG	2 cut(s)	77, 674
PspN4I	GGNNCC	1 cut(s)	610
PsuI	RGATCY	3 cut(s)	68, 348, 513
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SaqAI	TTAA	2 cut(s)	219, 732
SatI	GCNGC	2 cut(s)	489, 719
Sau3AI	GATC	7 cut(s)	63, 68, 250, 348, 513, 742, 746
ScrFI	CCNGG	3 cut(s)	79, 613, 676
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	2 cut(s)	39, 160
Sse9I	AATT	4 cut(s)	232, 292, 313, 477
SsiI	CCGC	4 cut(s)	246, 488, 536, 721
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	1 cut(s)	396
StyD4I	CCNGG	3 cut(s)	77, 611, 674
TaaI	ACNGT	1 cut(s)	690
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	2 cut(s)	630, 745
TasI	AATT	4 cut(s)	232, 292, 313, 477
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	1 cut(s)	491
TfiI	GAWTC	2 cut(s)	545, 559
Tru1I	TTAA	2 cut(s)	219, 732
Tru9I	TTAA	2 cut(s)	219, 732
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	2 cut(s)	127, 241
TseI	GCWGC	1 cut(s)	718
Tsp45I	GTSAC	2 cut(s)	127, 241
TspDTI	ATGAA	3 cut(s)	545, 615, 648
TspRI	CASTG	1 cut(s)	187
XagI	CCTNNNNNAGG	1 cut(s)	76
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.