Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002278

Physical Location & Seq

Genomic Coordinates Reverse (-)

53674478 .. 53677657

Gene Structure 3180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG270700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGATTTTGCTTCCACCGCGGTAGCATTAAGTTTAGCGTTAGTTTTAGCTGTAGTTGCAGTTAGACACCGTGCCCGAAGATTGCATGACAAGAACAAGAGATACCATCCTGTTGCCGGAACTGTCGTGCACCAACTTATAAACTTCCCTAGGTTACACCATTACATGACTGAACTTGCGGGTAAGTATAACACTTACAGGATGCTCGACTTGTTTAAAGGTGCGGTTTACACAGCAGATCCTGCAAATGTGGAATATGTGCTCAAAACAAACTTCACTAATTATGGCAAGCTATCCACTTGGATGCCAATAGGGATCAAAATGCAGACCACTGGAAGAAATCAAAGGCAGCCTTTTGACTCTTCCGTTCTCACAATTTGGCCACGGACTACTCCCTCTTTGTCTATGAATAAGCTTCTTGTACCCACTGTGGTTCCATTTGCAGCCCTCTTACCATCCACATATATTTCATGCCTTTTAATTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

162

Amino Acids

18.29

Weight (kDa)

10.1

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28456 FvH4_7g28458
prunus_persica	Prupe.2G285100_v2.0.a1 Prupe.3G021600_v2.0.a1
pyrus_communis	pycom11g06300
rosa_chinensis	RchiOBHm_Chr1g0359961 RchiOBHm_Chr1g0375421 RchiOBHm_Chr1g0375501
rosa_multiflora	Rmu_sc0001644.1_g000034 Rmu_sc0003191.1_g000013 Rmu_sc0004191.1_g000013 Rmu_sc0008215.1_g000003 Rmu_sc0031070.1_g000002
rosa_roxburghii	Rroxscaffold_4G00282770 Rroxscaffold_4G00282850 Rroxscaffold_4G00296750
rosa_samantha	Rh1AG287900 Rh1AG400700 Rh1AG401500 Rh1AG402300 Rh1AG403300 Rh1AG403400 Rh1AG403500 Rh1BG200800 Rh1BG253200 Rh1BG253300 Rh1BG363600 Rh1BG363700 Rh1BG366300 Rh1BG366400 Rh1BG366500 Rh1BG366900 Rh1BG367100 Rh1CG270600 Rh1CG270700 Rh1CG376900 Rh1CG379100 Rh1CG379200 Rh1CG379600 Rh1CG379900 Rh2BG274600 Rh2DG289700 Rh7BG011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AccII	CGCG	1 cut(s)	20
AciI	CCGC	4 cut(s)	18, 20, 179, 224
AclWI	GGATC	2 cut(s)	233, 323
AcoI	YGGCCR	1 cut(s)	380
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	1 cut(s)	116
AluBI	AGCT	3 cut(s)	50, 292, 415
AluI	AGCT	3 cut(s)	50, 292, 415
Alw21I	GWGCWC	2 cut(s)	132, 264
Alw44I	GTGCAC	1 cut(s)	128
AlwI	GGATC	2 cut(s)	233, 323
AlwNI	CAGNNNCTG	1 cut(s)	242
AoxI	GGCC	1 cut(s)	380
ApaLI	GTGCAC	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	349, 443
AspA2I	CCTAGG	1 cut(s)	149
AvrII	CCTAGG	1 cut(s)	149
BaeGI	GKGCMC	2 cut(s)	76, 132
BalI	TGGCCA	1 cut(s)	382
Bbv12I	GWGCWC	2 cut(s)	132, 264
BbvI	GCAGC	2 cut(s)	361, 455
BccI	CCATC	2 cut(s)	114, 463
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	2 cut(s)	350, 444
BlnI	CCTAGG	1 cut(s)	149
BlsI	GCNGC	2 cut(s)	351, 445
BmiI	GGNNCC	1 cut(s)	435
BmsI	GCATC	2 cut(s)	192, 294
BsaJI	CCNNGG	3 cut(s)	18, 149, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	337
BseDI	CCNNGG	3 cut(s)	18, 149, 383
BseGI	GGATG	4 cut(s)	106, 207, 309, 455
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	337
BseSI	GKGCMC	2 cut(s)	76, 132
BseXI	GCAGC	2 cut(s)	361, 455
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	1 cut(s)	382
BsiHKAI	GWGCWC	2 cut(s)	132, 264
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	1 cut(s)	116
BsnI	GGCC	1 cut(s)	382
Bsp1286I	GDGCHC	3 cut(s)	76, 132, 264
Bsp143I	GATC	2 cut(s)	238, 315
BspACI	CCGC	4 cut(s)	18, 20, 179, 224
BspANI	GGCC	1 cut(s)	382
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	435
BspPI	GGATC	2 cut(s)	233, 323
BsrI	ACTGG	1 cut(s)	337
BssECI	CCNNGG	3 cut(s)	18, 149, 383
BssMI	GATC	2 cut(s)	238, 315
BssT1I	CCWWGG	1 cut(s)	149
Bst4CI	ACNGT	3 cut(s)	71, 124, 430
Bst6I	CTCTTC	1 cut(s)	367
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	290
BstDSI	CCRYGG	2 cut(s)	18, 383
BstF5I	GGATG	4 cut(s)	106, 207, 309, 455
BstFNI	CGCG	1 cut(s)	20
BstKTI	GATC	2 cut(s)	241, 318
BstMBI	GATC	2 cut(s)	238, 315
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 56, 242
BstSFI	CTRYAG	1 cut(s)	51
BstSLI	GKGCMC	2 cut(s)	76, 132
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	361, 455
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	382
BtgI	CCRYGG	2 cut(s)	18, 383
BtsCI	GGATG	4 cut(s)	106, 207, 309, 455
BtsIMutI	CAGTG	2 cut(s)	330, 426
Cac8I	GCNNGC	1 cut(s)	290
CaiI	CAGNNNCTG	1 cut(s)	242
Cfr42I	CCGCGG	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	422
CviAII	CATG	3 cut(s)	86, 166, 471
CviJI	RGCY	6 cut(s)	50, 292, 352, 382, 415, 446
CviKI_1	RGCY	6 cut(s)	50, 292, 352, 382, 415, 446
CviQI	GTAC	1 cut(s)	422
DpnI	GATC	2 cut(s)	240, 317
DpnII	GATC	2 cut(s)	238, 315
DraI	TTTAAA	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	380
Eam1104I	CTCTTC	1 cut(s)	367
EarI	CTCTTC	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	3 cut(s)	89, 169, 474
FalI	AAGNNNNNCTT	2 cut(s)	337, 369
FatI	CATG	3 cut(s)	85, 165, 470
FauI	CCCGC	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	350, 444
FokI	GGATG	4 cut(s)	93, 214, 316, 442
Fsp4HI	GCNGC	2 cut(s)	350, 444
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	2 cut(s)	350, 444
HaeIII	GGCC	1 cut(s)	382
HapII	CCGG	1 cut(s)	117
Hin1II	CATG	3 cut(s)	89, 169, 474
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	1 cut(s)	359
HpaII	CCGG	1 cut(s)	117
Hpy166II	GTNNAC	2 cut(s)	130, 229
Hpy188I	TCNGA	1 cut(s)	488
Hpy8I	GTNNAC	2 cut(s)	130, 229
HpyCH4III	ACNGT	3 cut(s)	71, 124, 430
HpyCH4V	TGCA	6 cut(s)	59, 85, 130, 245, 325, 443
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 56, 242
Hsp92II	CATG	3 cut(s)	89, 169, 474
KspI	CCGCGG	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	238, 315
LpnPI	CCDG	5 cut(s)	123, 130, 184, 255, 318
Lsp1109I	GCAGC	2 cut(s)	361, 455
LweI	GCATC	2 cut(s)	192, 294
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	153
MalI	GATC	2 cut(s)	240, 317
MboI	GATC	2 cut(s)	238, 315
MboII	GAAGA	3 cut(s)	90, 348, 354
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	3 cut(s)	76, 132, 264
MlsI	TGGCCA	1 cut(s)	382
MluCI	AATT	3 cut(s)	280, 375, 480
MluNI	TGGCCA	1 cut(s)	382
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	2 cut(s)	406, 458
Mox20I	TGGCCA	1 cut(s)	382
MscI	TGGCCA	1 cut(s)	382
MseI	TTAA	3 cut(s)	29, 216, 479
MslI	CAYNNNNRTG	1 cut(s)	302
Msp20I	TGGCCA	1 cut(s)	382
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	117
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	3 cut(s)	17, 56, 242
NdeII	GATC	2 cut(s)	238, 315
NlaIII	CATG	3 cut(s)	89, 169, 474
NlaIV	GGNNCC	1 cut(s)	435
PkrI	GCNGC	2 cut(s)	351, 445
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
PsiI	TTATAA	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	435
PsrI	GAACNNNNNNTAC	2 cut(s)	86, 118
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
RseI	CAYNNNNRTG	1 cut(s)	302
SacII	CCGCGG	1 cut(s)	21
SaqAI	TTAA	3 cut(s)	29, 216, 479
SatI	GCNGC	2 cut(s)	350, 444
Sau3AI	GATC	2 cut(s)	238, 315
SchI	GAGTC	1 cut(s)	353
SduI	GDGCHC	3 cut(s)	76, 132, 264
SetI	ASST	5 cut(s)	52, 155, 223, 294, 417
SfaNI	GCATC	2 cut(s)	192, 294
SfcI	CTRYAG	1 cut(s)	51
Sfr303I	CCGCGG	1 cut(s)	21
SgrBI	CCGCGG	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	302
Sse9I	AATT	3 cut(s)	280, 375, 480
SsiI	CCGC	4 cut(s)	18, 20, 179, 224
SspMI	CTAG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	3 cut(s)	71, 124, 430
TaqI	TCGA	1 cut(s)	207
TasI	AATT	3 cut(s)	280, 375, 480
Tru1I	TTAA	3 cut(s)	29, 216, 479
Tru9I	TTAA	3 cut(s)	29, 216, 479
TscAI	CASTG	2 cut(s)	337, 433
TseI	GCWGC	2 cut(s)	349, 443
TspDTI	ATGAA	2 cut(s)	422, 459
TspGWI	ACGGA	2 cut(s)	355, 400
TspRI	CASTG	2 cut(s)	337, 433
VneI	GTGCAC	1 cut(s)	128
XmaJI	CCTAGG	1 cut(s)	149
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.