Rh1BG363600

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002278
Physical Location & Seq
Reverse (-)
49317530 .. 49319618
2089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG363600.1

Sequence Viewer

Length: 492 bp
ATGGATTTTCATCCCACTCTGCCTGTAGCTCCTACAGCAATAAGTTTAGCTGTACTTATTCTTTTAGCAGTATTTTTTTGGCCAGAGAAGAACAAGAGATACCCTCCTGTTGCAGGAACTGTCTTACACCAACTGATCAACTTCAACAGGGTACACCATTACATGACTGTGCTTGCATGCAAGTACAAAACTTACACGATGCTTGGCTTGTTCAGAACTGTGGTTTACACTGCAGATCCTGCAAATGTGGAATACGTGTTCAAAACAAACTTCGCTAACTATGGCAAGGGATTCTACCTGCATGACATTCTGTCTGATGCTTTGGGTGATGGGATCTTCGCTGTGGATGGGGACAAATGGCTGCATCAGAGGAAGGCATCAAGCTCTCAGTTCTCAACCAAAGTAATTAGGGAAGGGAAATTCTACGGTACCTGTATGTATGCGATACACTCATTTACAGATCTGACAACAATTTTGTTGTCATTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

163

Amino Acids

18.49

Weight (kDa)

9.04

Isoelectric Point (pI)

34.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 43 - 134 2.6e-06 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 306
Acc65I GGTACC 1 cut(s) 428
AccB1I GGYRCC 1 cut(s) 428
AclWI GGATC 2 cut(s) 230, 341
AcoI YGGCCR 1 cut(s) 80
AcsI RAATTY 1 cut(s) 419
AfaI GTAC 4 cut(s) 54, 153, 185, 430
AfiI CCNNNNNNNGG 1 cut(s) 113
AflIII ACRYGT 1 cut(s) 255
AgsI TTSAA 2 cut(s) 145, 262
AhdI GACNNNNNGTC 1 cut(s) 310
AloI GAACNNNNNNTCC 2 cut(s) 242, 274
AluBI AGCT 3 cut(s) 29, 50, 384
AluI AGCT 3 cut(s) 29, 50, 384
AlwI GGATC 2 cut(s) 230, 341
AlwNI CAGNNNCTG 2 cut(s) 119, 239
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 361
ApoI RAATTY 1 cut(s) 419
ArsI GACNNNNNNTTYG 2 cut(s) 457, 489
Asp718I GGTACC 1 cut(s) 428
AsuHPI GGTGA 1 cut(s) 338
BalI TGGCCA 1 cut(s) 82
BanI GGYRCC 1 cut(s) 428
BbvI GCAGC 1 cut(s) 348
BccI CCATC 2 cut(s) 323, 341
BclI TGATCA 1 cut(s) 135
BfmI CTRYAG 3 cut(s) 24, 33, 231
BfuAI ACCTGC 1 cut(s) 306
BglII AGATCT 1 cut(s) 460
BisI GCNGC 1 cut(s) 362
BlsI GCNGC 1 cut(s) 363
BmeRI GACNNNNNGTC 1 cut(s) 310
BmiI GGNNCC 1 cut(s) 430
BmsI GCATC 4 cut(s) 189, 307, 373, 386
BplI GAGNNNNNCTC 2 cut(s) 88, 120
BsaAI YACGTR 1 cut(s) 256
BsaBI GATNNNNATC 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse8I GATNNNNATC 1 cut(s) 9
BseGI GGATG 2 cut(s) 10, 352
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMII CTCAG 1 cut(s) 401
BseXI GCAGC 1 cut(s) 348
BshFI GGCC 1 cut(s) 82
BshNI GGYRCC 1 cut(s) 428
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 365
BsnI GGCC 1 cut(s) 82
Bsp143I GATC 4 cut(s) 135, 235, 333, 460
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 430
BspMAI CTGCAG 1 cut(s) 235
BspMI ACCTGC 1 cut(s) 306
BspPI GGATC 2 cut(s) 230, 341
BspT107I GGYRCC 1 cut(s) 428
BssMI GATC 4 cut(s) 135, 235, 333, 460
Bst4CI ACNGT 4 cut(s) 121, 169, 220, 428
BstAPI GCANNNNNTGC 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 256
BstC8I GCNNGC 2 cut(s) 174, 178
BstDEI CTNAG 1 cut(s) 387
BstENI CCTNNNNNAGG 1 cut(s) 111
BstF5I GGATG 2 cut(s) 10, 352
BstKTI GATC 4 cut(s) 138, 238, 336, 463
BstMBI GATC 4 cut(s) 135, 235, 333, 460
BstMWI GCNNNNNNNGC 2 cut(s) 35, 239
BstNSI RCATGY 1 cut(s) 180
BstSFI CTRYAG 3 cut(s) 24, 33, 231
BstV1I GCAGC 1 cut(s) 348
BstX2I RGATCY 3 cut(s) 235, 333, 460
BstYI RGATCY 3 cut(s) 235, 333, 460
BsuRI GGCC 1 cut(s) 82
BtsCI GGATG 2 cut(s) 10, 352
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 228
BveI ACCTGC 1 cut(s) 306
Cac8I GCNNGC 2 cut(s) 174, 178
CaiI CAGNNNCTG 2 cut(s) 119, 239
Csp6I GTAC 4 cut(s) 53, 152, 184, 429
CviAII CATG 3 cut(s) 163, 177, 302
CviJI RGCY 6 cut(s) 29, 50, 82, 207, 361, 384
CviKI_1 RGCY 6 cut(s) 29, 50, 82, 207, 361, 384
CviQI GTAC 4 cut(s) 53, 152, 184, 429
DdeI CTNAG 1 cut(s) 387
DpnI GATC 4 cut(s) 137, 237, 335, 462
DpnII GATC 4 cut(s) 135, 235, 333, 460
DriI GACNNNNNGTC 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 80
Eam1105I GACNNNNNGTC 1 cut(s) 310
EcoNI CCTNNNNNAGG 1 cut(s) 111
FaeI CATG 3 cut(s) 166, 180, 305
FaiI YATR 6 cut(s) 164, 178, 282, 303, 437, 441
FaqI GGGAC 1 cut(s) 365
FatI CATG 3 cut(s) 162, 176, 301
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 362
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 1 cut(s) 362
GluI GCNGC 1 cut(s) 362
HaeIII GGCC 1 cut(s) 82
Hin1II CATG 3 cut(s) 166, 180, 305
HinfI GANTC 1 cut(s) 291
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 2 cut(s) 154, 226
Hpy188I TCNGA 4 cut(s) 215, 316, 369, 465
Hpy8I GTNNAC 2 cut(s) 154, 226
HpyAV CCTTC 2 cut(s) 367, 407
HpyCH4III ACNGT 4 cut(s) 121, 169, 220, 428
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 7 cut(s) 113, 176, 180, 233, 242, 301, 364
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 239
HpyF3I CTNAG 1 cut(s) 387
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 3 cut(s) 166, 180, 305
KpnI GGTACC 1 cut(s) 432
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 4 cut(s) 135, 235, 333, 460
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 8 cut(s) 36, 96, 99, 120, 133, 252, 311, 445
Lsp1109I GCAGC 1 cut(s) 348
LweI GCATC 4 cut(s) 189, 307, 373, 386
MaeII ACGT 1 cut(s) 255
MalI GATC 4 cut(s) 137, 237, 335, 462
MboI GATC 4 cut(s) 135, 235, 333, 460
MboII GAAGA 2 cut(s) 100, 328
MflI RGATCY 3 cut(s) 235, 333, 460
MlsI TGGCCA 1 cut(s) 82
MluCI AATT 3 cut(s) 405, 419, 471
MluNI TGGCCA 1 cut(s) 82
MnlI CCTC 2 cut(s) 114, 363
Mox20I TGGCCA 1 cut(s) 82
MscI TGGCCA 1 cut(s) 82
MslI CAYNNNNRTG 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 82
MwoI GCNNNNNNNGC 2 cut(s) 35, 239
NdeII GATC 4 cut(s) 135, 235, 333, 460
NlaIII CATG 3 cut(s) 166, 180, 305
NlaIV GGNNCC 1 cut(s) 430
NspI RCATGY 1 cut(s) 180
PaeI GCATGC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 291
PkrI GCNGC 1 cut(s) 363
Ppu21I YACGTR 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 430
PsrI GAACNNNNNNTAC 2 cut(s) 83, 115
PstI CTGCAG 1 cut(s) 235
PstNI CAGNNNCTG 2 cut(s) 119, 239
PsuI RGATCY 3 cut(s) 235, 333, 460
RsaI GTAC 4 cut(s) 54, 153, 185, 430
RsaNI GTAC 4 cut(s) 53, 152, 184, 429
RseI CAYNNNNRTG 1 cut(s) 167
SatI GCNGC 1 cut(s) 362
Sau3AI GATC 4 cut(s) 135, 235, 333, 460
SetI ASST 6 cut(s) 31, 52, 258, 300, 386, 434
SfaNI GCATC 4 cut(s) 189, 307, 373, 386
SfcI CTRYAG 3 cut(s) 24, 33, 231
SmiMI CAYNNNNRTG 1 cut(s) 167
SphI GCATGC 1 cut(s) 180
Sse9I AATT 3 cut(s) 405, 419, 471
TaaI ACNGT 4 cut(s) 121, 169, 220, 428
TaiI ACGT 1 cut(s) 258
TasI AATT 3 cut(s) 405, 419, 471
TatI WGTACW 2 cut(s) 52, 183
TfiI GAWTC 1 cut(s) 291
TscAI CASTG 1 cut(s) 235
TseI GCWGC 1 cut(s) 361
TspRI CASTG 1 cut(s) 235
XagI CCTNNNNNAGG 1 cut(s) 111
XapI RAATTY 1 cut(s) 419
XceI RCATGY 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.