Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002278

Physical Location & Seq

Genomic Coordinates Forward (+)

31751224 .. 31753974

Gene Structure 2751 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG200800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAAACACACACCCCCAAGAACGCATTTGGCACTAGTCATGGAGTTTCTTCTTTCAAACCCCATTTTCTTCTTCACAGCTTTGGCTCTAGTCCTATCCATTTTCACTGTCCAAGTCCTAAAAAGGAAGCTGAGCAAGAGAAACAAGAAGTACCCACCAGTTGCTGGGACAGTACTTCATCAGCTACGTAACTTCAAACGGGTGCACGATTACATGACTGATCTCGCTGCCAAATACAAGACTTACAGGCTGCTCGGCCCCTTCAGGACTGAGATCTATACCTCAGACCCGGCAAATGTTGAGTACATACTCAAATCGAACTTCGATAACTACGGAAAGTGCCCAACTGAAACACAAGAGAAGCCATTTGGGTGCAAAAGTTCCACCACAAATGGACACATGAGCATGGATCTACTGTGGTTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

142

Amino Acids

16.45

Weight (kDa)

9.76

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28456 FvH4_7g28458
prunus_persica	Prupe.2G285100_v2.0.a1 Prupe.3G021600_v2.0.a1
pyrus_communis	pycom11g06300
rosa_chinensis	RchiOBHm_Chr1g0359961 RchiOBHm_Chr1g0375421 RchiOBHm_Chr1g0375501
rosa_multiflora	Rmu_sc0001644.1_g000034 Rmu_sc0003191.1_g000013 Rmu_sc0004191.1_g000013 Rmu_sc0008215.1_g000003 Rmu_sc0031070.1_g000002
rosa_roxburghii	Rroxscaffold_4G00282770 Rroxscaffold_4G00282850 Rroxscaffold_4G00296750
rosa_samantha	Rh1AG287900 Rh1AG400700 Rh1AG401500 Rh1AG402300 Rh1AG403300 Rh1AG403400 Rh1AG403500 Rh1BG200800 Rh1BG253200 Rh1BG253300 Rh1BG363600 Rh1BG363700 Rh1BG366300 Rh1BG366400 Rh1BG366500 Rh1BG366900 Rh1BG367100 Rh1CG270600 Rh1CG270700 Rh1CG376900 Rh1CG379100 Rh1CG379200 Rh1CG379600 Rh1CG379900 Rh2BG274600 Rh2DG289700 Rh7BG011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	164
AclWI	GGATC	1 cut(s)	417
AcuI	CTGAAG	1 cut(s)	247
AfaI	GTAC	3 cut(s)	152, 174, 305
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	2 cut(s)	57, 196
AhlI	ACTAGT	1 cut(s)	34
AluBI	AGCT	3 cut(s)	80, 130, 184
AluI	AGCT	3 cut(s)	80, 130, 184
Alw21I	GWGCWC	1 cut(s)	207
Alw44I	GTGCAC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	417
AlwNI	CAGNNNCTG	1 cut(s)	164
AoxI	GGCC	1 cut(s)	256
ApaLI	GTGCAC	1 cut(s)	203
ApeKI	GCWGC	2 cut(s)	227, 250
AspS9I	GGNCC	1 cut(s)	257
AsuC2I	CCSGG	1 cut(s)	290
BaeGI	GKGCMC	2 cut(s)	207, 344
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	214, 237
BcnI	CCSGG	1 cut(s)	290
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	2 cut(s)	35, 89
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	2 cut(s)	228, 251
BlpI	GCTNAGC	1 cut(s)	131
BlsI	GCNGC	2 cut(s)	229, 252
BmcAI	AGTACT	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	1 cut(s)	290
Bpu1102I	GCTNAGC	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	290
BsaAI	YACGTR	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	158
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	3 cut(s)	122, 261, 297
BseNI	ACTGG	1 cut(s)	158
BseSI	GKGCMC	2 cut(s)	207, 344
BseXI	GCAGC	2 cut(s)	214, 237
BseYI	CCCAGC	1 cut(s)	164
BshFI	GGCC	1 cut(s)	258
BsiHKAI	GWGCWC	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	258
Bsp1286I	GDGCHC	2 cut(s)	207, 344
Bsp143I	GATC	3 cut(s)	220, 273, 409
Bsp1720I	GCTNAGC	1 cut(s)	131
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	3 cut(s)	123, 262, 296
BspHI	TCATGA	1 cut(s)	425
BspLI	GGNNCC	1 cut(s)	259
BspPI	GGATC	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	158
BssMI	GATC	3 cut(s)	220, 273, 409
Bst4CI	ACNGT	3 cut(s)	109, 172, 417
BstBAI	YACGTR	1 cut(s)	188
BstDEI	CTNAG	3 cut(s)	131, 270, 283
BstKTI	GATC	3 cut(s)	223, 276, 412
BstMBI	GATC	3 cut(s)	220, 273, 409
BstSCI	CCNGG	1 cut(s)	288
BstSLI	GKGCMC	2 cut(s)	207, 344
BstSNI	TACGTA	1 cut(s)	188
BstV1I	GCAGC	2 cut(s)	214, 237
BstX2I	RGATCY	2 cut(s)	273, 409
BstYI	RGATCY	2 cut(s)	273, 409
BsuRI	GGCC	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	164
CciI	TCATGA	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	257
Csp6I	GTAC	3 cut(s)	151, 173, 304
CviAII	CATG	5 cut(s)	40, 214, 400, 406, 426
CviJI	RGCY	7 cut(s)	80, 86, 130, 184, 250, 258, 364
CviKI_1	RGCY	7 cut(s)	80, 86, 130, 184, 250, 258, 364
CviQI	GTAC	3 cut(s)	151, 173, 304
DdeI	CTNAG	3 cut(s)	131, 270, 283
DpnI	GATC	3 cut(s)	222, 275, 411
DpnII	GATC	3 cut(s)	220, 273, 409
Eco105I	TACGTA	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	247
FaeI	CATG	5 cut(s)	43, 217, 403, 409, 429
FaiI	YATR	7 cut(s)	41, 215, 279, 308, 401, 407, 427
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	5 cut(s)	39, 213, 399, 405, 425
Fnu4HI	GCNGC	2 cut(s)	228, 251
Fsp4HI	GCNGC	2 cut(s)	228, 251
FspBI	CTAG	2 cut(s)	35, 89
GluI	GCNGC	2 cut(s)	228, 251
GsaI	CCCAGC	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	1 cut(s)	290
Hin1II	CATG	5 cut(s)	43, 217, 403, 409, 429
HpaII	CCGG	1 cut(s)	290
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	2 cut(s)	265, 426
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	3 cut(s)	109, 172, 417
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	205, 375
HpyF3I	CTNAG	3 cut(s)	131, 270, 283
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	5 cut(s)	43, 217, 403, 409, 429
Kzo9I	GATC	3 cut(s)	220, 273, 409
LpnPI	CCDG	5 cut(s)	150, 171, 232, 250, 303
Lsp1109I	GCAGC	2 cut(s)	214, 237
MaeI	CTAG	2 cut(s)	35, 89
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	3 cut(s)	222, 275, 411
MboI	GATC	3 cut(s)	220, 273, 409
MboII	GAAGA	3 cut(s)	41, 61, 64
MflI	RGATCY	2 cut(s)	273, 409
MhlI	GDGCHC	2 cut(s)	207, 344
MnlI	CCTC	1 cut(s)	292
MslI	CAYNNNNRTG	2 cut(s)	370, 404
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	290
NciI	CCSGG	1 cut(s)	290
NdeII	GATC	3 cut(s)	220, 273, 409
NlaIII	CATG	5 cut(s)	43, 217, 403, 409, 429
NlaIV	GGNNCC	1 cut(s)	259
NmeAIII	GCCGAG	1 cut(s)	234
PagI	TCATGA	1 cut(s)	425
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	229, 252
Ppu21I	YACGTR	1 cut(s)	188
PspFI	CCCAGC	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	257
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	2 cut(s)	273, 409
RsaI	GTAC	3 cut(s)	152, 174, 305
RsaNI	GTAC	3 cut(s)	151, 173, 304
RseI	CAYNNNNRTG	2 cut(s)	370, 404
SatI	GCNGC	2 cut(s)	228, 251
Sau3AI	GATC	3 cut(s)	220, 273, 409
Sau96I	GGNCC	1 cut(s)	257
ScaI	AGTACT	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	2 cut(s)	207, 344
SetI	ASST	5 cut(s)	82, 132, 186, 190, 284
SmiMI	CAYNNNNRTG	2 cut(s)	370, 404
SnaBI	TACGTA	1 cut(s)	188
SpeI	ACTAGT	1 cut(s)	34
SspMI	CTAG	2 cut(s)	35, 89
StyD4I	CCNGG	1 cut(s)	288
TaaI	ACNGT	3 cut(s)	109, 172, 417
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	2 cut(s)	317, 324
TatI	WGTACW	2 cut(s)	172, 303
TscAI	CASTG	1 cut(s)	112
TseI	GCWGC	2 cut(s)	227, 250
TspDTI	ATGAA	2 cut(s)	17, 167
TspGWI	ACGGA	1 cut(s)	348
TspRI	CASTG	1 cut(s)	112
Van91I	CCANNNNNTGG	1 cut(s)	164
VneI	GTGCAC	1 cut(s)	203
XspI	CTAG	2 cut(s)	35, 89
ZrmI	AGTACT	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.