Rh1AG403400

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002278
Physical Location & Seq
Forward (+)
63033688 .. 63033978
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG403400.1

Sequence Viewer

Length: 291 bp
ATGGATTTTGCTTCCACGGTGGTAGCATTAAGTTTAGCATTAGTTTTAGCTATAGTTTTGGTTAGAGACCATGCTCGAAGATTGCGTAACAAGAACAAGAGATACCATCCTATTGCAGGAACTATCGTGCACCAACTGATCAATTTCCCCAGGTTGCACCATTACATGACTGAGCTTGCATGCAAGTACAAAACTTACAGAATGCTCGACTTTTTCAAAGGTGTGGTTTACACAGCAGATCCTGCAAATGTGGAATATGTGCTCAAAACAAACTTTACCAATTATGGCAAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

97

Amino Acids

11.27

Weight (kDa)

9.88

Isoelectric Point (pI)

26.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 233
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 2 cut(s) 50, 175
AluI AGCT 2 cut(s) 50, 175
Alw21I GWGCWC 2 cut(s) 132, 264
Alw26I GTCTC 1 cut(s) 60
Alw44I GTGCAC 1 cut(s) 128
AlwI GGATC 1 cut(s) 233
AlwNI CAGNNNCTG 1 cut(s) 242
ApaLI GTGCAC 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 132
Bbv12I GWGCWC 2 cut(s) 132, 264
BccI CCATC 1 cut(s) 114
BciT130I CCWGG 1 cut(s) 151
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 51
Bme1390I CCNGG 1 cut(s) 151
BmrFI CCNGG 1 cut(s) 151
BsaI GGTCTC 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 15, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 116
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 2 cut(s) 15, 149
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMII CTCAG 1 cut(s) 162
BseSI GKGCMC 1 cut(s) 132
BsiHKAI GWGCWC 2 cut(s) 132, 264
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 60
BsmI GAATGC 1 cut(s) 207
Bso31I GGTCTC 1 cut(s) 60
Bsp1286I GDGCHC 2 cut(s) 132, 264
Bsp143I GATC 2 cut(s) 138, 238
BspCNI CTCAG 1 cut(s) 163
BspPI GGATC 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 60
BssECI CCNNGG 2 cut(s) 15, 149
BssMI GATC 2 cut(s) 138, 238
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 19
BstAPI GCANNNNNTGC 1 cut(s) 242
BstC8I GCNNGC 2 cut(s) 177, 181
BstDEI CTNAG 1 cut(s) 171
BstDSI CCRYGG 1 cut(s) 15
BstENI CCTNNNNNAGG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 106
BstKTI GATC 2 cut(s) 141, 241
BstMAI GTCTC 1 cut(s) 60
BstMBI GATC 2 cut(s) 138, 238
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 151
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 51
BstSLI GKGCMC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 1 cut(s) 106
Cac8I GCNNGC 2 cut(s) 177, 181
CaiI CAGNNNCTG 1 cut(s) 242
Csp6I GTAC 1 cut(s) 187
CviAII CATG 3 cut(s) 71, 166, 180
CviJI RGCY 2 cut(s) 50, 175
CviKI_1 RGCY 2 cut(s) 50, 175
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 1 cut(s) 171
DpnI GATC 2 cut(s) 140, 240
DpnII GATC 2 cut(s) 138, 238
Eco31I GGTCTC 1 cut(s) 60
EcoNI CCTNNNNNAGG 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 149
FaeI CATG 3 cut(s) 74, 169, 183
FaiI YATR 6 cut(s) 53, 72, 167, 181, 258, 285
FatI CATG 3 cut(s) 70, 165, 179
FbaI TGATCA 1 cut(s) 138
FokI GGATG 1 cut(s) 93
Hin1II CATG 3 cut(s) 74, 169, 183
Hpy166II GTNNAC 2 cut(s) 130, 229
Hpy8I GTNNAC 2 cut(s) 130, 229
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4V TGCA 6 cut(s) 116, 130, 157, 179, 183, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 1 cut(s) 171
Hsp92II CATG 3 cut(s) 74, 169, 183
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 2 cut(s) 138, 238
LpnPI CCDG 4 cut(s) 102, 136, 163, 255
MaeIII GTNAC 1 cut(s) 86
MalI GATC 2 cut(s) 140, 240
MboI GATC 2 cut(s) 138, 238
MboII GAAGA 1 cut(s) 90
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 2 cut(s) 132, 264
MluCI AATT 2 cut(s) 142, 280
MseI TTAA 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 151
Mva1269I GAATGC 1 cut(s) 207
MvaI CCWGG 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 2 cut(s) 138, 238
NlaIII CATG 3 cut(s) 74, 169, 183
NspI RCATGY 1 cut(s) 183
PaeI GCATGC 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PctI GAATGC 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PsrI GAACNNNNNNTAC 2 cut(s) 86, 118
PstNI CAGNNNCTG 1 cut(s) 242
PsuI RGATCY 1 cut(s) 238
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 29
Sau3AI GATC 2 cut(s) 138, 238
ScrFI CCNGG 1 cut(s) 151
SduI GDGCHC 2 cut(s) 132, 264
SetI ASST 4 cut(s) 52, 155, 177, 223
SfcI CTRYAG 1 cut(s) 51
SphI GCATGC 1 cut(s) 183
Sse9I AATT 2 cut(s) 142, 280
StyD4I CCNGG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 19
TaqI TCGA 2 cut(s) 76, 207
TasI AATT 2 cut(s) 142, 280
TatI WGTACW 1 cut(s) 186
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
VneI GTGCAC 1 cut(s) 128
XagI CCTNNNNNAGG 1 cut(s) 114
XceI RCATGY 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.