Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002278

Physical Location & Seq

Genomic Coordinates Forward (+)

64978941 .. 64983632

Gene Structure 4692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG379900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGATTTTGCTTCTACAACGGTAGCATTAAGTTTAGCATTACTTTTAGCTGTAGTTGTGGCCCGAAAATTGCGTGACAAGAACAAGAGATACCATCCTGTCGCCGGAACTTTCGTGCACCAAGTTATCAACTTCCCTAGGCTGCACCATTACATGACTGAGTTTGCATGCAAGTACAAAACTTACAGGATGCTCGACTTGTTCAAAGGTGCGGTTTACACAGCAGATCCTGCAAATGTGGAATATTTGCTCAAAACAAACTTCACTAATTATGGCAAGGTAGTACATCAAACAAGATATTTCAAAGTTCAAACATTAGAACAGCAGAAGATGGGTAAAGAGAAAGATCCGCATGAAAATGCTCTTTTTATTGTCTATTGCCTGAGAACAGAATACAAGGCATTTCAAACAGATCAGCAGACAATGGGCACCAAAAAGTGCAGAAATATAAGTTTAAAGACAAAAGAGTTAACAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

159

Amino Acids

18.55

Weight (kDa)

9.66

Isoelectric Point (pI)

23.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28456 FvH4_7g28458
prunus_persica	Prupe.2G285100_v2.0.a1 Prupe.3G021600_v2.0.a1
pyrus_communis	pycom11g06300
rosa_chinensis	RchiOBHm_Chr1g0359961 RchiOBHm_Chr1g0375421 RchiOBHm_Chr1g0375501
rosa_multiflora	Rmu_sc0001644.1_g000034 Rmu_sc0003191.1_g000013 Rmu_sc0004191.1_g000013 Rmu_sc0008215.1_g000003 Rmu_sc0031070.1_g000002
rosa_roxburghii	Rroxscaffold_4G00282770 Rroxscaffold_4G00282850 Rroxscaffold_4G00296750
rosa_samantha	Rh1AG287900 Rh1AG400700 Rh1AG401500 Rh1AG402300 Rh1AG403300 Rh1AG403400 Rh1AG403500 Rh1BG200800 Rh1BG253200 Rh1BG253300 Rh1BG363600 Rh1BG363700 Rh1BG366300 Rh1BG366400 Rh1BG366500 Rh1BG366900 Rh1BG367100 Rh1CG270600 Rh1CG270700 Rh1CG376900 Rh1CG379100 Rh1CG379200 Rh1CG379600 Rh1CG379900 Rh2BG274600 Rh2DG289700 Rh7BG011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	428
AciI	CCGC	2 cut(s)	212, 350
AclWI	GGATC	2 cut(s)	221, 341
AfaI	GTAC	2 cut(s)	176, 285
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	4 cut(s)	205, 304, 311, 407
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw21I	GWGCWC	1 cut(s)	120
Alw44I	GTGCAC	1 cut(s)	116
AlwI	GGATC	2 cut(s)	221, 341
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	1 cut(s)	60
ApaLI	GTGCAC	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	142
AspA2I	CCTAGG	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	61
AvrII	CCTAGG	1 cut(s)	137
BaeGI	GKGCMC	2 cut(s)	120, 431
BanI	GGYRCC	1 cut(s)	428
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	129
BccI	CCATC	2 cut(s)	102, 325
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	1 cut(s)	143
BlnI	CCTAGG	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	430
BmsI	GCATC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	2 cut(s)	94, 195
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMII	CTCAG	2 cut(s)	150, 374
BseSI	GKGCMC	2 cut(s)	120, 431
BseXI	GCAGC	1 cut(s)	129
BsgI	GTGCAG	2 cut(s)	128, 460
BshFI	GGCC	1 cut(s)	62
BshNI	GGYRCC	1 cut(s)	428
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	104
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	120, 431
Bsp143I	GATC	3 cut(s)	226, 346, 412
BspACI	CCGC	2 cut(s)	212, 350
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	2 cut(s)	151, 375
BspLI	GGNNCC	1 cut(s)	430
BspPI	GGATC	2 cut(s)	221, 341
BspT107I	GGYRCC	1 cut(s)	428
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	3 cut(s)	226, 346, 412
BssT1I	CCWWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	22
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	2 cut(s)	159, 383
BstF5I	GGATG	2 cut(s)	94, 195
BstKTI	GATC	3 cut(s)	229, 349, 415
BstMBI	GATC	3 cut(s)	226, 346, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNSI	RCATGY	1 cut(s)	171
BstSFI	CTRYAG	1 cut(s)	51
BstSLI	GKGCMC	2 cut(s)	120, 431
BstV1I	GCAGC	1 cut(s)	129
BstX2I	RGATCY	2 cut(s)	226, 346
BstYI	RGATCY	2 cut(s)	226, 346
BsuRI	GGCC	1 cut(s)	62
BtsCI	GGATG	2 cut(s)	94, 195
Cac8I	GCNNGC	1 cut(s)	169
CaiI	CAGNNNCTG	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	61
Csp6I	GTAC	2 cut(s)	175, 284
CviAII	CATG	3 cut(s)	154, 168, 353
CviJI	RGCY	3 cut(s)	50, 62, 142
CviKI_1	RGCY	3 cut(s)	50, 62, 142
CviQI	GTAC	2 cut(s)	175, 284
DdeI	CTNAG	2 cut(s)	159, 383
DpnI	GATC	3 cut(s)	228, 348, 414
DpnII	GATC	3 cut(s)	226, 346, 412
DraI	TTTAAA	1 cut(s)	456
Eco130I	CCWWGG	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	3 cut(s)	157, 171, 356
FaiI	YATR	5 cut(s)	155, 169, 273, 354, 449
FatI	CATG	3 cut(s)	153, 167, 352
Fnu4HI	GCNGC	1 cut(s)	143
FokI	GGATG	2 cut(s)	81, 202
Fsp4HI	GCNGC	1 cut(s)	143
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	1 cut(s)	105
Hin1II	CATG	3 cut(s)	157, 171, 356
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HpaI	GTTAAC	1 cut(s)	471
HpaII	CCGG	1 cut(s)	105
Hpy166II	GTNNAC	3 cut(s)	118, 217, 471
Hpy8I	GTNNAC	3 cut(s)	118, 217, 471
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	6 cut(s)	118, 145, 167, 171, 233, 441
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	2 cut(s)	159, 383
Hsp92II	CATG	3 cut(s)	157, 171, 356
KspAI	GTTAAC	1 cut(s)	471
Kzo9I	GATC	3 cut(s)	226, 346, 412
LpnPI	CCDG	5 cut(s)	111, 118, 172, 243, 395
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	3 cut(s)	228, 348, 414
MboI	GATC	3 cut(s)	226, 346, 412
MboII	GAAGA	1 cut(s)	340
MflI	RGATCY	2 cut(s)	226, 346
MhlI	GDGCHC	2 cut(s)	120, 431
MluCI	AATT	2 cut(s)	68, 268
MseI	TTAA	4 cut(s)	29, 455, 470, 478
MslI	CAYNNNNRTG	1 cut(s)	357
MspI	CCGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	230
NdeII	GATC	3 cut(s)	226, 346, 412
NlaIII	CATG	3 cut(s)	157, 171, 356
NlaIV	GGNNCC	1 cut(s)	430
NmuCI	GTSAC	1 cut(s)	74
NspI	RCATGY	1 cut(s)	171
PaeI	GCATGC	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	430
PspPI	GGNCC	1 cut(s)	61
PsrI	GAACNNNNNNTAC	2 cut(s)	74, 106
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	2 cut(s)	226, 346
RsaI	GTAC	2 cut(s)	176, 285
RsaNI	GTAC	2 cut(s)	175, 284
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	4 cut(s)	29, 455, 470, 478
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	3 cut(s)	226, 346, 412
Sau96I	GGNCC	1 cut(s)	61
SduI	GDGCHC	2 cut(s)	120, 431
SetI	ASST	3 cut(s)	52, 211, 282
SfaNI	GCATC	1 cut(s)	180
SfcI	CTRYAG	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	357
SphI	GCATGC	1 cut(s)	171
Sse9I	AATT	2 cut(s)	68, 268
SsiI	CCGC	2 cut(s)	212, 350
SspI	AATATT	1 cut(s)	245
SspMI	CTAG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	22
TaqI	TCGA	1 cut(s)	195
TasI	AATT	2 cut(s)	68, 268
TatI	WGTACW	2 cut(s)	174, 283
Tru1I	TTAA	4 cut(s)	29, 455, 470, 478
Tru9I	TTAA	4 cut(s)	29, 455, 470, 478
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	1 cut(s)	369
VneI	GTGCAC	1 cut(s)	116
XceI	RCATGY	1 cut(s)	171
XmaJI	CCTAGG	1 cut(s)	137
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.