Rroxscaffold_4G00282850

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002278
Physical Location & Seq
Reverse (-)
4973522 .. 4974102
581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00282850.1

Sequence Viewer

Length: 459 bp
ATGGATTTTCTTTCCACACCTTTACCTCCCGTTGCAATAAGTTTAGCAGTAATATTCCTTTTAGCAGTGTTTTCTCTGCGGAAGAAGAACAAGAGATACCCTCCAGTAGTTGCCGGAACTGTCTTTCACCAACTGATCAACGCCCGCAAGGTGCACCATTATATGACTGAGCTTGCACGCAAGTACAGAACTTACAGGATACTTGGCTTGTTCAGATACACAGTCTACACAGCAGATCCAGTAAATATTGAATACATGCTCAAAACAAATGTCGCTAACTATTGCAAGGGATATTACCTGCATAGCATTCTTTCAGATGTTTTGGGCGATGGGATTTTTATTGTGGATGGGGACGAATGGCGGCATCAGAGGAAGGCATCAAGCTCTCAATTCTCAACCAAAGTACTTGGAGACTTCAGCAGTGAAATCTTCAAGATCAATGCAATGGGGGAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

152

Amino Acids

17.42

Weight (kDa)

9.55

Isoelectric Point (pI)

34.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 306
AccI GTMKAC 1 cut(s) 225
AciI CCGC 3 cut(s) 79, 145, 361
AclWI GGATC 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 400
AfaI GTAC 2 cut(s) 185, 405
AgsI TTSAA 2 cut(s) 251, 433
AluBI AGCT 2 cut(s) 172, 384
AluI AGCT 2 cut(s) 172, 384
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 405
Alw44I GTGCAC 1 cut(s) 152
AlwI GGATC 1 cut(s) 230
ApaLI GTGCAC 1 cut(s) 152
ArsI GACNNNNNNTTYG 2 cut(s) 255, 287
AsuHPI GGTGA 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 156
BccI CCATC 2 cut(s) 323, 341
BciVI GTATCC 1 cut(s) 192
BclI TGATCA 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 405
BfuAI ACCTGC 1 cut(s) 306
BfuI GTATCC 1 cut(s) 192
BisI GCNGC 1 cut(s) 362
BlsI GCNGC 1 cut(s) 363
BmcAI AGTACT 1 cut(s) 405
BmsI GCATC 2 cut(s) 373, 386
BplI GAGNNNNNCTC 2 cut(s) 85, 117
BpmI CTGGAG 1 cut(s) 87
Bse1I ACTGG 2 cut(s) 104, 239
Bse3DI GCAATG 1 cut(s) 450
BseGI GGATG 1 cut(s) 352
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 2 cut(s) 104, 239
BseSI GKGCMC 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 156
BsiSI CCGG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 365
BsmAI GTCTC 1 cut(s) 405
BsmFI GGGAC 1 cut(s) 365
BsmI GAATGC 1 cut(s) 306
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 3 cut(s) 135, 235, 435
BspACI CCGC 3 cut(s) 79, 145, 361
BspCNI CTCAG 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 306
BspPI GGATC 1 cut(s) 230
BsrDI GCAATG 1 cut(s) 450
BsrI ACTGG 2 cut(s) 104, 239
BssMI GATC 3 cut(s) 135, 235, 435
Bst4CI ACNGT 2 cut(s) 121, 223
BstC8I GCNNGC 3 cut(s) 145, 174, 178
BstDEI CTNAG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 352
BstKTI GATC 3 cut(s) 138, 238, 438
BstMAI GTCTC 1 cut(s) 405
BstMBI GATC 3 cut(s) 135, 235, 435
BstNSI RCATGY 1 cut(s) 259
BstSLI GKGCMC 1 cut(s) 156
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BsuI GTATCC 1 cut(s) 192
BtgZI GCGATG 1 cut(s) 342
BtsCI GGATG 1 cut(s) 352
BtsI GCAGTG 2 cut(s) 72, 427
BtsIMutI CAGTG 2 cut(s) 72, 427
BveI ACCTGC 1 cut(s) 306
Cac8I GCNNGC 3 cut(s) 145, 174, 178
Csp6I GTAC 2 cut(s) 184, 404
CviAII CATG 1 cut(s) 256
CviJI RGCY 3 cut(s) 172, 207, 384
CviKI_1 RGCY 3 cut(s) 172, 207, 384
CviQI GTAC 2 cut(s) 184, 404
DdeI CTNAG 1 cut(s) 168
DpnI GATC 3 cut(s) 137, 237, 437
DpnII GATC 3 cut(s) 135, 235, 435
Eco57I CTGAAG 1 cut(s) 400
FaeI CATG 1 cut(s) 259
FaiI YATR 4 cut(s) 162, 164, 257, 303
FaqI GGGAC 1 cut(s) 365
FatI CATG 1 cut(s) 255
FauI CCCGC 1 cut(s) 152
FbaI TGATCA 1 cut(s) 135
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 362
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 1 cut(s) 362
GluI GCNGC 1 cut(s) 362
GsuI CTGGAG 1 cut(s) 87
HapII CCGG 1 cut(s) 114
Hin1II CATG 1 cut(s) 259
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 154, 226
Hpy188I TCNGA 3 cut(s) 215, 316, 369
Hpy188III TCNNGA 1 cut(s) 433
Hpy8I GTNNAC 2 cut(s) 154, 226
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 2 cut(s) 121, 223
HpyCH4V TGCA 6 cut(s) 35, 154, 176, 285, 301, 443
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 1 cut(s) 259
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 3 cut(s) 135, 235, 435
LpnPI CCDG 5 cut(s) 117, 127, 181, 252, 311
LweI GCATC 2 cut(s) 373, 386
MalI GATC 3 cut(s) 137, 237, 437
MboI GATC 3 cut(s) 135, 235, 435
MboII GAAGA 3 cut(s) 94, 97, 421
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 1 cut(s) 389
MnlI CCTC 3 cut(s) 36, 111, 363
MseI TTAA 1 cut(s) 457
MspI CCGG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 306
NdeII GATC 3 cut(s) 135, 235, 435
NlaIII CATG 1 cut(s) 259
NspI RCATGY 1 cut(s) 259
PctI GAATGC 1 cut(s) 306
PkrI GCNGC 1 cut(s) 363
PsrI GAACNNNNNNTAC 2 cut(s) 80, 112
PsuI RGATCY 1 cut(s) 235
RsaI GTAC 2 cut(s) 185, 405
RsaNI GTAC 2 cut(s) 184, 404
SaqAI TTAA 1 cut(s) 457
SatI GCNGC 1 cut(s) 362
Sau3AI GATC 3 cut(s) 135, 235, 435
ScaI AGTACT 1 cut(s) 405
SduI GDGCHC 1 cut(s) 156
SetI ASST 6 cut(s) 22, 28, 153, 174, 300, 386
SfaNI GCATC 2 cut(s) 373, 386
Sse9I AATT 1 cut(s) 389
SsiI CCGC 3 cut(s) 79, 145, 361
SspI AATATT 2 cut(s) 54, 247
TaaI ACNGT 2 cut(s) 121, 223
TasI AATT 1 cut(s) 389
TatI WGTACW 2 cut(s) 183, 403
TauI GCSGC 1 cut(s) 364
Tru1I TTAA 1 cut(s) 457
Tru9I TTAA 1 cut(s) 457
TscAI CASTG 2 cut(s) 72, 427
TspRI CASTG 2 cut(s) 72, 427
VneI GTGCAC 1 cut(s) 152
XceI RCATGY 1 cut(s) 259
XmiI GTMKAC 1 cut(s) 225
ZrmI AGTACT 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.