Rh1CG379600

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002278
Physical Location & Seq
Forward (+)
64907448 .. 64918070
10623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG379600.1

Sequence Viewer

Length: 414 bp
ATGAGTGGCATGGATTTTGTTTCCACTGCAATAGCATTAAGTTTAGCAGTAACTTTAGCTACGCTTGTGATTAGACACCATGCCGGAAGATTGTGTGCGAAGAAAAAAAGATACCATCCTGTTGCTGGAACTGTCTTGAACCAACTCTTCAACTTCCCTAGGCTGCATCATTACATGACTGAGCTTGCATGCAGATACAAAACTTACAGATTGCTTGACTTGTCCAGAAGTGCAGTTTACACCGTAGATCCTGCAAATGTGGAATACATGCTCAAAACAAACTTTGCAAATTATGGAAAGCCCATAGTTCCACCAAATGTTCAAAAACACAGCAAACAGATTCCAACAGGACCCATCACGGCTTTTGAATATAGTCCCAAGTCTTTTGCAACATATGATGGCAGGGGGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

137

Amino Acids

15.38

Weight (kDa)

9.82

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 4 cut(s) 139, 151, 323, 368
AluBI AGCT 2 cut(s) 59, 184
AluI AGCT 2 cut(s) 59, 184
AlwI GGATC 1 cut(s) 242
ApeKI GCWGC 1 cut(s) 163
AspA2I CCTAGG 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 350
AvaII GGWCC 1 cut(s) 350
AvrII CCTAGG 1 cut(s) 158
BbvI GCAGC 1 cut(s) 150
BccI CCATC 3 cut(s) 123, 362, 392
BceAI ACGGC 1 cut(s) 375
BfaI CTAG 1 cut(s) 159
BisI GCNGC 1 cut(s) 164
BlnI CCTAGG 1 cut(s) 158
BlsI GCNGC 1 cut(s) 165
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 352
BmsI GCATC 1 cut(s) 175
BsaJI CCNNGG 1 cut(s) 158
Bsc4I CCNNNNNNNGG 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 158
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 150
BsgI GTGCAG 1 cut(s) 252
BsiSI CCGG 1 cut(s) 84
BslFI GGGAC 1 cut(s) 360
BslI CCNNNNNNNGG 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 360
Bsp143I GATC 1 cut(s) 247
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 352
BspPI GGATC 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 1 cut(s) 247
BssT1I CCWWGG 1 cut(s) 158
Bst4CI ACNGT 2 cut(s) 133, 244
Bst6I CTCTTC 1 cut(s) 152
BstC8I GCNNGC 2 cut(s) 186, 190
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 115
BstKTI GATC 1 cut(s) 250
BstMBI GATC 1 cut(s) 247
BstNSI RCATGY 2 cut(s) 192, 271
BstV1I GCAGC 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BtsCI GGATG 1 cut(s) 115
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 2 cut(s) 186, 190
Cfr13I GGNCC 1 cut(s) 350
CviAII CATG 5 cut(s) 10, 80, 175, 189, 268
CviJI RGCY 5 cut(s) 59, 163, 184, 301, 362
CviKI_1 RGCY 5 cut(s) 59, 163, 184, 301, 362
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 350
EcoO109I RGGNCCY 1 cut(s) 350
EcoT14I CCWWGG 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 158
FaeI CATG 5 cut(s) 13, 83, 178, 192, 271
FaqI GGGAC 1 cut(s) 360
FatI CATG 5 cut(s) 9, 79, 174, 188, 267
FauNDI CATATG 1 cut(s) 394
Fnu4HI GCNGC 1 cut(s) 164
FokI GGATG 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 164
FspBI CTAG 1 cut(s) 159
GluI GCNGC 1 cut(s) 164
HapII CCGG 1 cut(s) 84
Hin1II CATG 5 cut(s) 13, 83, 178, 192, 271
HinfI GANTC 1 cut(s) 340
HpaII CCGG 1 cut(s) 84
Hpy166II GTNNAC 1 cut(s) 238
Hpy188III TCNNGA 2 cut(s) 136, 225
Hpy8I GTNNAC 1 cut(s) 238
HpyCH4III ACNGT 2 cut(s) 133, 244
HpyCH4V TGCA 8 cut(s) 29, 166, 188, 192, 233, 254, 287, 389
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 5 cut(s) 13, 83, 178, 192, 271
Kzo9I GATC 1 cut(s) 247
LpnPI CCDG 7 cut(s) 97, 111, 132, 238, 264, 333, 388
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 1 cut(s) 175
MaeI CTAG 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 3 cut(s) 99, 112, 139
MflI RGATCY 1 cut(s) 247
MluCI AATT 1 cut(s) 289
MmeI TCCRAC 1 cut(s) 368
MseI TTAA 1 cut(s) 38
MspI CCGG 1 cut(s) 84
NdeI CATATG 1 cut(s) 394
NdeII GATC 1 cut(s) 247
NlaIII CATG 5 cut(s) 13, 83, 178, 192, 271
NlaIV GGNNCC 1 cut(s) 352
NspI RCATGY 2 cut(s) 192, 271
PaeI GCATGC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 340
PkrI GCNGC 1 cut(s) 165
PpuMI RGGWCCY 1 cut(s) 350
Psp5II RGGWCCY 1 cut(s) 350
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 1 cut(s) 350
PspPPI RGGWCCY 1 cut(s) 350
PsuI RGATCY 1 cut(s) 247
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 1 cut(s) 350
SetI ASST 2 cut(s) 61, 186
SfaNI GCATC 1 cut(s) 175
SinI GGWCC 1 cut(s) 350
SphI GCATGC 1 cut(s) 192
Sse9I AATT 1 cut(s) 289
SspMI CTAG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 2 cut(s) 133, 244
TasI AATT 1 cut(s) 289
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TscAI CASTG 1 cut(s) 31
TseI GCWGC 1 cut(s) 163
TspRI CASTG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 350
XceI RCATGY 2 cut(s) 192, 271
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XmaJI CCTAGG 1 cut(s) 158
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.