Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002278

Physical Location & Seq

Genomic Coordinates Reverse (-)

64550365 .. 64555770

Gene Structure 5406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG376900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGATTTTCATCCCACTCTGCCTGTAGCTCCTACAGCAATAAGTTTAGCTGTACTTATTCTTTTAGCAGTATTTTTTTGGCCAGAGAAGAACAAGAGATACCCTCCTGTTGCAGGAACTGTCTTACACCAACTGATCAACTTCAACAGGGTACACCATTACATGACTGTGCTTGCATGCAAGTACAAAACTTACACGATGCTTGGCTTGTTCAGAACTGTGGTTTACACTGCAGATCCTGCAAATGTGGAATACGTGTTCAAAACAAACTTCGCTAACTATGGCAAGGGTAGTCGAAAATTGGGAATCAAAAGAGAAGCAGCGACAGCAACGAGCAACTCCACCACTTTGGCACCGGCTACGGGGAAGAAAGAGAGAACAGACACAAGCGAGGGAATTACACACAGAATGCTTGCAAAAGCAAAGGGTTTTTCGGGGTGGCTCGGGCTTCAAAACAGAACACCATATAAAACATGGCCATCATGGTTACCTAATCTTCTCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

168

Amino Acids

18.9

Weight (kDa)

10.12

Isoelectric Point (pI)

30.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28456 FvH4_7g28458
prunus_persica	Prupe.2G285100_v2.0.a1 Prupe.3G021600_v2.0.a1
pyrus_communis	pycom11g06300
rosa_chinensis	RchiOBHm_Chr1g0359961 RchiOBHm_Chr1g0375421 RchiOBHm_Chr1g0375501
rosa_multiflora	Rmu_sc0001644.1_g000034 Rmu_sc0003191.1_g000013 Rmu_sc0004191.1_g000013 Rmu_sc0008215.1_g000003 Rmu_sc0031070.1_g000002
rosa_roxburghii	Rroxscaffold_4G00282770 Rroxscaffold_4G00282850 Rroxscaffold_4G00296750
rosa_samantha	Rh1AG287900 Rh1AG400700 Rh1AG401500 Rh1AG402300 Rh1AG403300 Rh1AG403400 Rh1AG403500 Rh1BG200800 Rh1BG253200 Rh1BG253300 Rh1BG363600 Rh1BG363700 Rh1BG366300 Rh1BG366400 Rh1BG366500 Rh1BG366900 Rh1BG367100 Rh1CG270600 Rh1CG270700 Rh1CG376900 Rh1CG379100 Rh1CG379200 Rh1CG379600 Rh1CG379900 Rh2BG274600 Rh2DG289700 Rh7BG011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	352
AclWI	GGATC	1 cut(s)	230
AcoI	YGGCCR	2 cut(s)	80, 476
AfaI	GTAC	3 cut(s)	54, 153, 185
AfiI	CCNNNNNNNGG	2 cut(s)	113, 362
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	3 cut(s)	145, 262, 452
AloI	GAACNNNNNNTCC	2 cut(s)	242, 274
AluBI	AGCT	2 cut(s)	29, 50
AluI	AGCT	2 cut(s)	29, 50
AlwI	GGATC	1 cut(s)	230
AlwNI	CAGNNNCTG	2 cut(s)	119, 239
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	2 cut(s)	80, 476
ApeKI	GCWGC	1 cut(s)	320
AvaI	CYCGRG	1 cut(s)	443
BalI	TGGCCA	2 cut(s)	82, 478
BanI	GGYRCC	1 cut(s)	352
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	1 cut(s)	487
BclI	TGATCA	1 cut(s)	135
BfmI	CTRYAG	3 cut(s)	24, 33, 231
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
BmeT110I	CYCGRG	1 cut(s)	443
BmiI	GGNNCC	1 cut(s)	354
BmsI	GCATC	1 cut(s)	189
BplI	GAGNNNNNCTC	2 cut(s)	88, 120
BsaAI	YACGTR	1 cut(s)	256
BsaBI	GATNNNNATC	1 cut(s)	9
BsaWI	WCCGGW	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 362
Bse118I	RCCGGY	1 cut(s)	355
Bse8I	GATNNNNATC	1 cut(s)	9
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	2 cut(s)	113, 362
BseXI	GCAGC	1 cut(s)	332
BshFI	GGCC	2 cut(s)	82, 478
BshNI	GGYRCC	1 cut(s)	352
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	2 cut(s)	356, 502
BslI	CCNNNNNNNGG	2 cut(s)	113, 362
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	2 cut(s)	82, 478
BsoBI	CYCGRG	1 cut(s)	443
Bsp143I	GATC	2 cut(s)	135, 235
BspANI	GGCC	2 cut(s)	82, 478
BspLI	GGNNCC	1 cut(s)	354
BspMAI	CTGCAG	1 cut(s)	235
BspPI	GGATC	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	352
BsrFI	RCCGGY	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	355
BssMI	GATC	2 cut(s)	135, 235
Bst4CI	ACNGT	3 cut(s)	121, 169, 220
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstBAI	YACGTR	1 cut(s)	256
BstC8I	GCNNGC	3 cut(s)	174, 178, 414
BstEII	GGTNACC	1 cut(s)	486
BstENI	CCTNNNNNAGG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	138, 238
BstMBI	GATC	2 cut(s)	135, 235
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 239, 326
BstNSI	RCATGY	1 cut(s)	180
BstPI	GGTNACC	1 cut(s)	486
BstSFI	CTRYAG	3 cut(s)	24, 33, 231
BstV1I	GCAGC	1 cut(s)	332
BstX2I	RGATCY	1 cut(s)	235
BstXI	CCANNNNNNTGG	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	82, 478
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	3 cut(s)	174, 178, 414
CaiI	CAGNNNCTG	2 cut(s)	119, 239
Cfr10I	RCCGGY	1 cut(s)	355
Csp6I	GTAC	3 cut(s)	53, 152, 184
CviAII	CATG	4 cut(s)	163, 177, 474, 483
CviJI	RGCY	8 cut(s)	29, 50, 82, 207, 359, 442, 448, 478
CviKI_1	RGCY	8 cut(s)	29, 50, 82, 207, 359, 442, 448, 478
CviQI	GTAC	3 cut(s)	53, 152, 184
DpnI	GATC	2 cut(s)	137, 237
DpnII	GATC	2 cut(s)	135, 235
EaeI	YGGCCR	2 cut(s)	80, 476
Eco88I	CYCGRG	1 cut(s)	443
Eco91I	GGTNACC	1 cut(s)	486
EcoNI	CCTNNNNNAGG	1 cut(s)	111
EcoO65I	GGTNACC	1 cut(s)	486
FaeI	CATG	4 cut(s)	166, 180, 477, 486
FaiI	YATR	7 cut(s)	164, 178, 282, 466, 468, 475, 484
FatI	CATG	4 cut(s)	162, 176, 473, 482
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	321
Fsp4HI	GCNGC	1 cut(s)	321
GluI	GCNGC	1 cut(s)	321
HaeIII	GGCC	2 cut(s)	82, 478
HapII	CCGG	2 cut(s)	356, 502
Hin1II	CATG	4 cut(s)	166, 180, 477, 486
HinfI	GANTC	1 cut(s)	306
HpaII	CCGG	2 cut(s)	356, 502
Hpy166II	GTNNAC	2 cut(s)	154, 226
Hpy188I	TCNGA	1 cut(s)	215
Hpy8I	GTNNAC	2 cut(s)	154, 226
HpyCH4III	ACNGT	3 cut(s)	121, 169, 220
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	6 cut(s)	113, 176, 180, 233, 242, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 239, 326
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	4 cut(s)	166, 180, 477, 486
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	135, 235
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	7 cut(s)	36, 96, 99, 120, 133, 252, 369
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	1 cut(s)	189
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	486
MalI	GATC	2 cut(s)	137, 237
MboI	GATC	2 cut(s)	135, 235
MboII	GAAGA	3 cut(s)	100, 379, 488
MflI	RGATCY	1 cut(s)	235
MlsI	TGGCCA	2 cut(s)	82, 478
MluCI	AATT	2 cut(s)	299, 396
MluNI	TGGCCA	2 cut(s)	82, 478
MnlI	CCTC	2 cut(s)	114, 385
Mox20I	TGGCCA	2 cut(s)	82, 478
MscI	TGGCCA	2 cut(s)	82, 478
MslI	CAYNNNNRTG	1 cut(s)	167
Msp20I	TGGCCA	2 cut(s)	82, 478
MspI	CCGG	2 cut(s)	356, 502
Mva1269I	GAATGC	1 cut(s)	414
MwoI	GCNNNNNNNGC	3 cut(s)	35, 239, 326
NdeII	GATC	2 cut(s)	135, 235
NlaIII	CATG	4 cut(s)	166, 180, 477, 486
NlaIV	GGNNCC	1 cut(s)	354
NspI	RCATGY	1 cut(s)	180
PaeI	GCATGC	1 cut(s)	180
PctI	GAATGC	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	306
PkrI	GCNGC	1 cut(s)	322
Ppu21I	YACGTR	1 cut(s)	256
PspEI	GGTNACC	1 cut(s)	486
PspN4I	GGNNCC	1 cut(s)	354
PsrI	GAACNNNNNNTAC	2 cut(s)	83, 115
PstI	CTGCAG	1 cut(s)	235
PstNI	CAGNNNCTG	2 cut(s)	119, 239
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	3 cut(s)	54, 153, 185
RsaNI	GTAC	3 cut(s)	53, 152, 184
RseI	CAYNNNNRTG	1 cut(s)	167
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	2 cut(s)	135, 235
SetI	ASST	4 cut(s)	31, 52, 258, 493
SfaNI	GCATC	1 cut(s)	189
SfcI	CTRYAG	3 cut(s)	24, 33, 231
SmiMI	CAYNNNNRTG	1 cut(s)	167
SphI	GCATGC	1 cut(s)	180
Sse9I	AATT	2 cut(s)	299, 396
TaaI	ACNGT	3 cut(s)	121, 169, 220
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	295
TasI	AATT	2 cut(s)	299, 396
TatI	WGTACW	2 cut(s)	52, 183
TfiI	GAWTC	1 cut(s)	306
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	1 cut(s)	320
TspRI	CASTG	1 cut(s)	235
XagI	CCTNNNNNAGG	1 cut(s)	111
XceI	RCATGY	1 cut(s)	180
XcmI	CCANNNNNNNNNTGG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.