Rh1BG363700

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002278
Physical Location & Seq
Reverse (-)
49319884 .. 49322392
2509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG363700.1

Sequence Viewer

Length: 660 bp
ATGCATCTGTTGCTATGTCTAGTTCTAACTTCATCATCATCTTCAATATCCTACAAGTATATGTTGGTCATGGATTTTCTTTCCACTCCTTTACCTCCCGTTGCAATAAGTTTAGCAGTAATATTCCTTTTAGCAGTGTTTTCTCTGCGGAAGAAGAACAAGAGATACCCTCCAGTTGCCGGAACTGTCTTTCACCAACTGATCAACGCCCGCAAGGTGCACCATTATATGACTGAGCTTGCATGCAAGTACAGAACTTACAGGATACTTGGCTTGTTCAGATACACAGTCTACACAGCAGATCCAGTCAATATTGAATACATGCTCAAAACAAATGTCGCTAACTATTCAAAGGGATATTACCTGCATAGCATTCTTTCAGATGTTTTGGGCGATGGGATTTTCACTGTGGATGGGGACGAATGGCGGCATCAGAGGAAGGCATCAAGCTCTCAATTCTCAACCAAAGTACTTAGAGACTTCAGCAGTGAAATCTTCAAGACCAATGCAATAAAACTTGCTGGCATAATTTCTGAAGCTGCTACTCGCTACGAATCAATGGAAATGCAAGTGAGTTTCAGAGTTTGCAATGTCTCAAAAATAACATACTACATATGTAGCACTGTACGTTTGAGTTTTCCTGTTTTTCGTTTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

219

Amino Acids

25.1

Weight (kDa)

9.59

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 65 - 198 1.8e-06 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 372
AccI GTMKAC 1 cut(s) 291
AciI CCGC 3 cut(s) 148, 211, 427
AclWI GGATC 1 cut(s) 296
AcuI CTGAAG 2 cut(s) 466, 555
AfaI GTAC 3 cut(s) 251, 471, 627
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 4 cut(s) 45, 317, 351, 499
AluBI AGCT 3 cut(s) 238, 450, 539
AluI AGCT 3 cut(s) 238, 450, 539
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 2 cut(s) 471, 598
Alw44I GTGCAC 1 cut(s) 218
AlwI GGATC 1 cut(s) 296
ApaLI GTGCAC 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 539
ArsI GACNNNNNNTTYG 2 cut(s) 321, 353
AsuHPI GGTGA 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 526
BccI CCATC 2 cut(s) 389, 407
BciVI GTATCC 1 cut(s) 258
BclI TGATCA 1 cut(s) 201
BcoDI GTCTC 2 cut(s) 471, 598
BfaI CTAG 1 cut(s) 20
BfuAI ACCTGC 1 cut(s) 372
BfuI GTATCC 1 cut(s) 258
BisI GCNGC 2 cut(s) 428, 540
BlsI GCNGC 2 cut(s) 429, 541
BmcAI AGTACT 1 cut(s) 471
BmsI GCATC 3 cut(s) 13, 439, 452
BplI GAGNNNNNCTC 2 cut(s) 154, 186
BpmI CTGGAG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse1I ACTGG 2 cut(s) 173, 305
Bse3DI GCAATG 1 cut(s) 595
BseGI GGATG 1 cut(s) 418
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMI GCAATG 1 cut(s) 595
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 2 cut(s) 173, 305
BseSI GKGCMC 1 cut(s) 222
BseXI GCAGC 1 cut(s) 526
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 2 cut(s) 471, 598
BsmFI GGGAC 1 cut(s) 431
BsmI GAATGC 1 cut(s) 372
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 2 cut(s) 201, 301
BspACI CCGC 3 cut(s) 148, 211, 427
BspCNI CTCAG 1 cut(s) 226
BspMI ACCTGC 1 cut(s) 372
BspPI GGATC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 595
BsrI ACTGG 2 cut(s) 173, 305
BssMI GATC 2 cut(s) 201, 301
Bst4CI ACNGT 4 cut(s) 187, 289, 409, 625
BstAPI GCANNNNNTGC 1 cut(s) 10
BstC8I GCNNGC 4 cut(s) 211, 240, 244, 523
BstDEI CTNAG 2 cut(s) 234, 473
BstF5I GGATG 1 cut(s) 418
BstKTI GATC 2 cut(s) 204, 304
BstMAI GTCTC 2 cut(s) 471, 598
BstMBI GATC 2 cut(s) 201, 301
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNSI RCATGY 2 cut(s) 246, 325
BstSLI GKGCMC 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 526
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BsuI GTATCC 1 cut(s) 258
BtgZI GCGATG 1 cut(s) 408
BtsCI GGATG 1 cut(s) 418
BtsI GCAGTG 2 cut(s) 141, 493
BtsIMutI CAGTG 4 cut(s) 141, 405, 493, 621
BveI ACCTGC 1 cut(s) 372
Cac8I GCNNGC 4 cut(s) 211, 240, 244, 523
Csp6I GTAC 3 cut(s) 250, 470, 626
CviAII CATG 3 cut(s) 70, 243, 322
CviJI RGCY 4 cut(s) 238, 273, 450, 539
CviKI_1 RGCY 4 cut(s) 238, 273, 450, 539
CviQI GTAC 3 cut(s) 250, 470, 626
DdeI CTNAG 2 cut(s) 234, 473
DpnI GATC 2 cut(s) 203, 303
DpnII GATC 2 cut(s) 201, 301
Eco57I CTGAAG 2 cut(s) 466, 555
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 73, 246, 325
FaqI GGGAC 1 cut(s) 431
FatI CATG 3 cut(s) 69, 242, 321
FauI CCCGC 1 cut(s) 218
FauNDI CATATG 1 cut(s) 614
FbaI TGATCA 1 cut(s) 201
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 2 cut(s) 428, 540
FokI GGATG 1 cut(s) 425
Fsp4HI GCNGC 2 cut(s) 428, 540
FspBI CTAG 1 cut(s) 20
GluI GCNGC 2 cut(s) 428, 540
GsuI CTGGAG 1 cut(s) 156
HapII CCGG 1 cut(s) 180
Hin1II CATG 3 cut(s) 73, 246, 325
HinfI GANTC 1 cut(s) 554
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 2 cut(s) 220, 292
Hpy188I TCNGA 5 cut(s) 281, 382, 435, 535, 581
Hpy188III TCNNGA 2 cut(s) 499, 657
Hpy8I GTNNAC 2 cut(s) 220, 292
HpyAV CCTTC 1 cut(s) 433
HpyCH4III ACNGT 4 cut(s) 187, 289, 409, 625
HpyCH4IV ACGT 1 cut(s) 628
HpyCH4V TGCA 9 cut(s) 4, 104, 220, 242, 246, 367, 509, 568, 588
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 234, 473
HpySE526I ACGT 1 cut(s) 628
Hsp92II CATG 3 cut(s) 73, 246, 325
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 2 cut(s) 201, 301
LpnPI CCDG 7 cut(s) 186, 193, 247, 318, 377, 507, 654
Lsp1109I GCAGC 1 cut(s) 526
LweI GCATC 3 cut(s) 13, 439, 452
MaeI CTAG 1 cut(s) 20
MaeII ACGT 1 cut(s) 628
MalI GATC 2 cut(s) 203, 303
MboI GATC 2 cut(s) 201, 301
MboII GAAGA 4 cut(s) 33, 163, 166, 487
MflI RGATCY 1 cut(s) 301
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 2 cut(s) 455, 528
MnlI CCTC 3 cut(s) 105, 180, 429
Mph1103I ATGCAT 1 cut(s) 6
MspI CCGG 1 cut(s) 180
Mva1269I GAATGC 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeI CATATG 1 cut(s) 614
NdeII GATC 2 cut(s) 201, 301
NlaIII CATG 3 cut(s) 73, 246, 325
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 246, 325
PaeI GCATGC 1 cut(s) 246
PctI GAATGC 1 cut(s) 372
PfeI GAWTC 1 cut(s) 554
PkrI GCNGC 2 cut(s) 429, 541
PsrI GAACNNNNNNTAC 2 cut(s) 149, 181
PsuI RGATCY 1 cut(s) 301
RsaI GTAC 3 cut(s) 251, 471, 627
RsaNI GTAC 3 cut(s) 250, 470, 626
SatI GCNGC 2 cut(s) 428, 540
Sau3AI GATC 2 cut(s) 201, 301
ScaI AGTACT 1 cut(s) 471
SduI GDGCHC 1 cut(s) 222
SetI ASST 7 cut(s) 97, 219, 240, 366, 452, 541, 631
SfaNI GCATC 3 cut(s) 13, 439, 452
SphI GCATGC 1 cut(s) 246
Sse9I AATT 2 cut(s) 455, 528
SsiI CCGC 3 cut(s) 148, 211, 427
SspI AATATT 2 cut(s) 123, 313
SspMI CTAG 1 cut(s) 20
TaaI ACNGT 4 cut(s) 187, 289, 409, 625
TaiI ACGT 1 cut(s) 631
TasI AATT 2 cut(s) 455, 528
TatI WGTACW 2 cut(s) 249, 469
TauI GCSGC 1 cut(s) 430
TfiI GAWTC 1 cut(s) 554
TscAI CASTG 4 cut(s) 141, 412, 493, 628
TseI GCWGC 1 cut(s) 539
TspDTI ATGAA 1 cut(s) 21
TspRI CASTG 4 cut(s) 141, 412, 493, 628
VneI GTGCAC 1 cut(s) 218
XceI RCATGY 2 cut(s) 246, 325
XmiI GTMKAC 1 cut(s) 291
XspI CTAG 1 cut(s) 20
ZrmI AGTACT 1 cut(s) 471
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.