Rh7BG011900

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002278
Physical Location & Seq
Reverse (-)
775710 .. 779836
4127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG011900.1

Sequence Viewer

Length: 873 bp
ATGGATTTTCTTTCCACTGCTTTACCACCCATAGCAATAAGTTTAGCTGTAATACTCTTGGCCGTTATTTTTTGGCCTGCGAAGAACAAGAGGTACCCTCCTGTTGCCGGAACTGTCTTGCACCAAGCCATCAATTTCCCAAGGCTGCATCATTACCACACTGAGCTTGCATGCAAGTACAAAACTTTCAGGATACTTGAATTGTTCAAACATGCTGTCTACACAGTAGATCCTGCAAATGTGCAATACATACTCAAAGCAAATGTTGCAAACTATGGCAAGGGATTGTACCTGCATAGCATTCTGTCCGATCTTATGGGAGATGGAATCTTCGCTGTGGATGGGGACAAATGGCTGCATCAAAGGAAGACATCAGGCTCTCACTTCTCAACCAAAGTACTTAGAGACTTCAGTAGTGAAATCTTCAAAACCAATGGGGTAAAACTTGCTGGCATAATTTATAAAGCTGTAACCTGCGACGAATCAATGGATATCCAAGACTTGTTTATGAAATCAACCTTGGATTCAATCGTCAAGATTCTACTTGGCATCGAACTAGGTACCATGTCTGGAACAAATAATGAAGAAAATATTCGGTTTTCCAATGCTTTTGATGATGCAAACCAAGCTACCCTTCATCGTCTTTCTGATATCTTCTGGAAGATCAAGCGGTTCTTGAACATTGGTAGGGAAGCAGTGCTAAGAAAAAATATAGAAGTGGTGGATCACTTTATATACAAATTAATCAACAAAAAGATTGAAACACTCCATAATTCAGAAAATGATAAGCTATATGTGAGTTATATATTTACATTCCTTTCTGTTCTAGATTGTAGTGATATAATATTAATTGATCTAATGTTACTGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

290

Amino Acids

33.02

Weight (kDa)

8.28

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 42 - 260 5.7e-15 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 462
Acc36I ACCTGC 2 cut(s) 300, 482
Acc65I GGTACC 2 cut(s) 93, 560
AccB1I GGYRCC 2 cut(s) 93, 560
AccI GTMKAC 1 cut(s) 219
AciI CCGC 1 cut(s) 670
AclWI GGATC 2 cut(s) 224, 732
AcoI YGGCCR 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 394
AfaI GTAC 5 cut(s) 95, 179, 290, 399, 562
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 6 cut(s) 200, 208, 427, 528, 679, 761
AjuI GAANNNNNNNTTGG 4 cut(s) 503, 535, 618, 650
AluBI AGCT 5 cut(s) 47, 166, 467, 629, 790
AluI AGCT 5 cut(s) 47, 166, 467, 629, 790
Alw26I GTCTC 1 cut(s) 399
AlwI GGATC 2 cut(s) 224, 732
AoxI GGCC 2 cut(s) 60, 74
ApeKI GCWGC 2 cut(s) 145, 355
ArsI GACNNNNNNTTYG 2 cut(s) 201, 233
AseI ATTAAT 2 cut(s) 743, 848
Asp700I GAANNNNTTC 1 cut(s) 591
Asp718I GGTACC 2 cut(s) 93, 560
BanI GGYRCC 2 cut(s) 93, 560
BbsI GAAGAC 1 cut(s) 374
BbvI GCAGC 2 cut(s) 132, 342
BccI CCATC 3 cut(s) 137, 317, 335
BceAI ACGGC 1 cut(s) 47
BciVI GTATCC 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 399
BfaI CTAG 2 cut(s) 557, 827
BfuAI ACCTGC 2 cut(s) 300, 482
BfuI GTATCC 1 cut(s) 186
BisI GCNGC 2 cut(s) 146, 356
BlsI GCNGC 2 cut(s) 147, 357
BmcAI AGTACT 1 cut(s) 399
BmiI GGNNCC 2 cut(s) 95, 562
BmsI GCATC 4 cut(s) 157, 367, 558, 607
BpiI GAAGAC 1 cut(s) 374
BplI GAGNNNNNCTC 2 cut(s) 82, 114
BsaJI CCNNGG 2 cut(s) 140, 519
Bsc4I CCNNNNNNNGG 1 cut(s) 107
BseDI CCNNGG 2 cut(s) 140, 519
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 153
BseXI GCAGC 2 cut(s) 132, 342
BshFI GGCC 2 cut(s) 62, 76
BshNI GGYRCC 2 cut(s) 93, 560
BsiSI CCGG 1 cut(s) 108
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 1 cut(s) 399
BsmFI GGGAC 1 cut(s) 359
BsmI GAATGC 1 cut(s) 300
BsnI GGCC 2 cut(s) 62, 76
Bsp143I GATC 5 cut(s) 229, 310, 663, 724, 853
BspACI CCGC 1 cut(s) 670
BspANI GGCC 2 cut(s) 62, 76
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 2 cut(s) 95, 562
BspMI ACCTGC 2 cut(s) 300, 482
BspPI GGATC 2 cut(s) 224, 732
BspT107I GGYRCC 2 cut(s) 93, 560
BssECI CCNNGG 2 cut(s) 140, 519
BssMI GATC 5 cut(s) 229, 310, 663, 724, 853
BssT1I CCWWGG 2 cut(s) 140, 519
Bst4CI ACNGT 2 cut(s) 115, 226
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 4 cut(s) 78, 168, 172, 451
BstDEI CTNAG 3 cut(s) 162, 401, 701
BstF5I GGATG 1 cut(s) 346
BstKTI GATC 5 cut(s) 232, 313, 666, 727, 856
BstMAI GTCTC 1 cut(s) 399
BstMBI GATC 5 cut(s) 229, 310, 663, 724, 853
BstMWI GCNNNNNNNGC 2 cut(s) 266, 626
BstNSI RCATGY 2 cut(s) 174, 215
BstV1I GCAGC 2 cut(s) 132, 342
BstV2I GAAGAC 1 cut(s) 374
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuI GTATCC 1 cut(s) 186
BsuRI GGCC 2 cut(s) 62, 76
BtsCI GGATG 1 cut(s) 346
BtsI GCAGTG 2 cut(s) 15, 702
BtsIMutI CAGTG 3 cut(s) 15, 159, 702
BveI ACCTGC 2 cut(s) 300, 482
Cac8I GCNNGC 4 cut(s) 78, 168, 172, 451
Csp6I GTAC 5 cut(s) 94, 178, 289, 398, 561
CviAII CATG 3 cut(s) 171, 212, 565
CviQI GTAC 5 cut(s) 94, 178, 289, 398, 561
DdeI CTNAG 3 cut(s) 162, 401, 701
DpnI GATC 5 cut(s) 231, 312, 665, 726, 855
DpnII GATC 5 cut(s) 229, 310, 663, 724, 853
EaeI YGGCCR 1 cut(s) 60
Eco130I CCWWGG 2 cut(s) 140, 519
Eco32I GATATC 2 cut(s) 493, 652
Eco57I CTGAAG 1 cut(s) 394
EcoRV GATATC 2 cut(s) 493, 652
EcoT14I CCWWGG 2 cut(s) 140, 519
ErhI CCWWGG 2 cut(s) 140, 519
FaeI CATG 3 cut(s) 174, 215, 568
FalI AAGNNNNNCTT 4 cut(s) 618, 650, 659, 691
FaqI GGGAC 1 cut(s) 359
FatI CATG 3 cut(s) 170, 211, 564
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 2 cut(s) 146, 356
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 2 cut(s) 146, 356
FspBI CTAG 2 cut(s) 557, 827
GluI GCNGC 2 cut(s) 146, 356
HaeIII GGCC 2 cut(s) 62, 76
HapII CCGG 1 cut(s) 108
Hin1II CATG 3 cut(s) 174, 215, 568
HinfI GANTC 4 cut(s) 327, 482, 524, 538
HpaII CCGG 1 cut(s) 108
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 3 cut(s) 310, 649, 778
Hpy188III TCNNGA 6 cut(s) 190, 535, 570, 658, 676, 827
Hpy8I GTNNAC 1 cut(s) 220
Hpy99I CGWCG 1 cut(s) 482
HpyAV CCTTC 1 cut(s) 644
HpyCH4III ACNGT 2 cut(s) 115, 226
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 626
HpyF3I CTNAG 3 cut(s) 162, 401, 701
Hsp92II CATG 3 cut(s) 174, 215, 568
KpnI GGTACC 2 cut(s) 97, 564
Kzo9I GATC 5 cut(s) 229, 310, 663, 724, 853
Lsp1109I GCAGC 2 cut(s) 132, 342
LweI GCATC 4 cut(s) 157, 367, 558, 607
MaeI CTAG 2 cut(s) 557, 827
MaeIII GTNAC 2 cut(s) 469, 861
MalI GATC 5 cut(s) 231, 312, 665, 726, 855
MboI GATC 5 cut(s) 229, 310, 663, 724, 853
MboII GAAGA 7 cut(s) 94, 322, 379, 415, 596, 646, 673
MflI RGATCY 1 cut(s) 229
MluCI AATT 6 cut(s) 133, 200, 456, 740, 772, 849
MnlI CCTC 2 cut(s) 84, 108
MroXI GAANNNNTTC 1 cut(s) 591
MseI TTAA 2 cut(s) 743, 848
MspI CCGG 1 cut(s) 108
Mva1269I GAATGC 1 cut(s) 300
MwoI GCNNNNNNNGC 2 cut(s) 266, 626
NdeII GATC 5 cut(s) 229, 310, 663, 724, 853
NlaIII CATG 3 cut(s) 174, 215, 568
NlaIV GGNNCC 2 cut(s) 95, 562
NspI RCATGY 2 cut(s) 174, 215
PaeI GCATGC 1 cut(s) 174
PctI GAATGC 1 cut(s) 300
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 4 cut(s) 327, 482, 524, 538
PkrI GCNGC 2 cut(s) 147, 357
PshBI ATTAAT 2 cut(s) 743, 848
PsiI TTATAA 1 cut(s) 462
PspN4I GGNNCC 2 cut(s) 95, 562
PsrI GAACNNNNNNTAC 2 cut(s) 77, 109
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 5 cut(s) 95, 179, 290, 399, 562
RsaNI GTAC 5 cut(s) 94, 178, 289, 398, 561
SaqAI TTAA 2 cut(s) 743, 848
SatI GCNGC 2 cut(s) 146, 356
Sau3AI GATC 5 cut(s) 229, 310, 663, 724, 853
ScaI AGTACT 1 cut(s) 399
SfaNI GCATC 4 cut(s) 157, 367, 558, 607
SphI GCATGC 1 cut(s) 174
Sse9I AATT 6 cut(s) 133, 200, 456, 740, 772, 849
SsiI CCGC 1 cut(s) 670
SspI AATATT 2 cut(s) 592, 846
SspMI CTAG 2 cut(s) 557, 827
StyI CCWWGG 2 cut(s) 140, 519
TaaI ACNGT 2 cut(s) 115, 226
TaqI TCGA 1 cut(s) 552
TasI AATT 6 cut(s) 133, 200, 456, 740, 772, 849
TatI WGTACW 2 cut(s) 177, 397
TfiI GAWTC 4 cut(s) 327, 482, 524, 538
Tru1I TTAA 2 cut(s) 743, 848
Tru9I TTAA 2 cut(s) 743, 848
TscAI CASTG 3 cut(s) 22, 166, 702
TseI GCWGC 2 cut(s) 145, 355
TspDTI ATGAA 3 cut(s) 524, 597, 626
TspRI CASTG 3 cut(s) 22, 166, 702
VspI ATTAAT 2 cut(s) 743, 848
XbaI TCTAGA 1 cut(s) 826
XceI RCATGY 2 cut(s) 174, 215
XmiI GTMKAC 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 2 cut(s) 557, 827
ZrmI AGTACT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.