Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002278

Physical Location & Seq

Genomic Coordinates Reverse (-)

38205189 .. 38208763

Gene Structure 3575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG253300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGATTTTGCTTCCACGGCAGTAGCATTAAGTTTAGCGTTAGTTTTAGCTGTAGTTGCAGTTAGACACCGTGCCCGAAGATTGCATGACAAGAACAAGAGATACCATCCTGTTGCCGGAACTGTCGTGCACCAACTTATCAACTTCCCTAGGTTACACCATTACATGATTGAACTTGGGGGTAAGTACAACACTAATGGGATGCTCGACTTGTTCAAAGGTGCGGTTTACACTGCAGATCCTGCAAATGTGGAATATGTGCTCAAAACAAACTTCACTAATTATGGCAAGGCCTTTCTGATTGATTTGGGGAATTACCGTCGATCACGGCCTTGCTCAGAAACCGGAGGATCCGACCCAAGATACAATTTCGATGATTCGGTTAAGGACCCAAGTTATAGCATTCTTGAAGAAATCCGTGCCAAGTTTTCAAAGCTCTCTATCAATAGTACATCCAAGGCCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

155

Amino Acids

17.43

Weight (kDa)

9.57

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28456 FvH4_7g28458
prunus_persica	Prupe.2G285100_v2.0.a1 Prupe.3G021600_v2.0.a1
pyrus_communis	pycom11g06300
rosa_chinensis	RchiOBHm_Chr1g0359961 RchiOBHm_Chr1g0375421 RchiOBHm_Chr1g0375501
rosa_multiflora	Rmu_sc0001644.1_g000034 Rmu_sc0003191.1_g000013 Rmu_sc0004191.1_g000013 Rmu_sc0008215.1_g000003 Rmu_sc0031070.1_g000002
rosa_roxburghii	Rroxscaffold_4G00282770 Rroxscaffold_4G00282850 Rroxscaffold_4G00296750
rosa_samantha	Rh1AG287900 Rh1AG400700 Rh1AG401500 Rh1AG402300 Rh1AG403300 Rh1AG403400 Rh1AG403500 Rh1BG200800 Rh1BG253200 Rh1BG253300 Rh1BG363600 Rh1BG363700 Rh1BG366300 Rh1BG366400 Rh1BG366500 Rh1BG366900 Rh1BG367100 Rh1CG270600 Rh1CG270700 Rh1CG376900 Rh1CG379100 Rh1CG379200 Rh1CG379600 Rh1CG379900 Rh2BG274600 Rh2DG289700 Rh7BG011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	3 cut(s)	233, 345, 358
AfaI	GTAC	2 cut(s)	188, 451
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	4 cut(s)	173, 217, 410, 432
AluBI	AGCT	2 cut(s)	50, 436
AluI	AGCT	2 cut(s)	50, 436
Alw21I	GWGCWC	2 cut(s)	132, 264
Alw44I	GTGCAC	1 cut(s)	128
AlwI	GGATC	3 cut(s)	233, 345, 358
AlwNI	CAGNNNCTG	1 cut(s)	242
AoxI	GGCC	3 cut(s)	291, 329, 459
ApaLI	GTGCAC	1 cut(s)	128
AspA2I	CCTAGG	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	388, 460
AvaII	GGWCC	1 cut(s)	388
AvrII	CCTAGG	1 cut(s)	149
BaeGI	GKGCMC	2 cut(s)	76, 132
BamHI	GGATCC	1 cut(s)	350
Bbv12I	GWGCWC	2 cut(s)	132, 264
BccI	CCATC	1 cut(s)	114
BceAI	ACGGC	2 cut(s)	33, 344
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	2 cut(s)	51, 234
BlnI	CCTAGG	1 cut(s)	149
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	2 cut(s)	388, 460
BmiI	GGNNCC	2 cut(s)	352, 390
BmrI	ACTGGG	1 cut(s)	457
BmsI	GCATC	1 cut(s)	192
BmuI	ACTGGG	1 cut(s)	457
BsaJI	CCNNGG	3 cut(s)	15, 149, 456
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	463
BseDI	CCNNGG	3 cut(s)	15, 149, 456
BseGI	GGATG	3 cut(s)	106, 207, 452
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	463
BseSI	GKGCMC	2 cut(s)	76, 132
BshFI	GGCC	3 cut(s)	293, 331, 461
BsiHKAI	GWGCWC	2 cut(s)	132, 264
BsiSI	CCGG	2 cut(s)	117, 345
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	402
BsnI	GGCC	3 cut(s)	293, 331, 461
Bsp1286I	GDGCHC	3 cut(s)	76, 132, 264
Bsp143I	GATC	3 cut(s)	238, 323, 350
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	3 cut(s)	293, 331, 461
BspCNI	CTCAG	1 cut(s)	350
BspLI	GGNNCC	2 cut(s)	352, 390
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	3 cut(s)	233, 345, 358
BsrI	ACTGG	1 cut(s)	463
BssECI	CCNNGG	3 cut(s)	15, 149, 456
BssMI	GATC	3 cut(s)	238, 323, 350
BssT1I	CCWWGG	2 cut(s)	149, 456
Bst4CI	ACNGT	3 cut(s)	71, 124, 320
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstDEI	CTNAG	1 cut(s)	337
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	3 cut(s)	106, 207, 452
BstKTI	GATC	3 cut(s)	241, 326, 353
BstMBI	GATC	3 cut(s)	238, 323, 350
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 56, 242
BstSFI	CTRYAG	2 cut(s)	51, 234
BstSLI	GKGCMC	2 cut(s)	76, 132
BstX2I	RGATCY	2 cut(s)	238, 350
BstYI	RGATCY	2 cut(s)	238, 350
BsuRI	GGCC	3 cut(s)	293, 331, 461
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	3 cut(s)	106, 207, 452
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	231
CaiI	CAGNNNCTG	1 cut(s)	242
Cfr13I	GGNCC	2 cut(s)	388, 460
Csp6I	GTAC	2 cut(s)	187, 450
CviAII	CATG	2 cut(s)	86, 166
CviJI	RGCY	5 cut(s)	50, 293, 331, 436, 461
CviKI_1	RGCY	5 cut(s)	50, 293, 331, 436, 461
CviQI	GTAC	2 cut(s)	187, 450
DdeI	CTNAG	1 cut(s)	337
DpnI	GATC	3 cut(s)	240, 325, 352
DpnII	GATC	3 cut(s)	238, 323, 350
Eco130I	CCWWGG	2 cut(s)	149, 456
Eco147I	AGGCCT	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	388
EcoO109I	RGGNCCY	1 cut(s)	388
EcoT14I	CCWWGG	2 cut(s)	149, 456
ErhI	CCWWGG	2 cut(s)	149, 456
FaeI	CATG	2 cut(s)	89, 169
FaiI	YATR	5 cut(s)	87, 167, 258, 285, 399
FatI	CATG	2 cut(s)	85, 165
FokI	GGATG	3 cut(s)	93, 214, 439
FspBI	CTAG	1 cut(s)	150
HaeIII	GGCC	3 cut(s)	293, 331, 461
HapII	CCGG	2 cut(s)	117, 345
Hin1II	CATG	2 cut(s)	89, 169
HinfI	GANTC	1 cut(s)	377
HpaII	CCGG	2 cut(s)	117, 345
Hpy166II	GTNNAC	2 cut(s)	130, 229
Hpy188I	TCNGA	3 cut(s)	300, 340, 355
Hpy188III	TCNNGA	1 cut(s)	407
Hpy8I	GTNNAC	2 cut(s)	130, 229
Hpy99I	CGWCG	1 cut(s)	324
HpyCH4III	ACNGT	3 cut(s)	71, 124, 320
HpyCH4V	TGCA	5 cut(s)	59, 85, 130, 236, 245
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 56, 242
HpyF3I	CTNAG	1 cut(s)	337
Hsp92II	CATG	2 cut(s)	89, 169
Kzo9I	GATC	3 cut(s)	238, 323, 350
LpnPI	CCDG	4 cut(s)	123, 130, 255, 358
LweI	GCATC	1 cut(s)	192
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	153
MalI	GATC	3 cut(s)	240, 325, 352
MboI	GATC	3 cut(s)	238, 323, 350
MboII	GAAGA	2 cut(s)	90, 422
MflI	RGATCY	2 cut(s)	238, 350
MhlI	GDGCHC	3 cut(s)	76, 132, 264
MluCI	AATT	3 cut(s)	280, 313, 367
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	1 cut(s)	341
MseI	TTAA	2 cut(s)	29, 384
MspI	CCGG	2 cut(s)	117, 345
Mva1269I	GAATGC	1 cut(s)	402
MwoI	GCNNNNNNNGC	3 cut(s)	17, 56, 242
NdeII	GATC	3 cut(s)	238, 323, 350
NlaIII	CATG	2 cut(s)	89, 169
NlaIV	GGNNCC	2 cut(s)	352, 390
PceI	AGGCCT	1 cut(s)	293
PctI	GAATGC	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	377
PpuMI	RGGWCCY	1 cut(s)	388
Psp5II	RGGWCCY	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	352, 390
PspPI	GGNCC	2 cut(s)	388, 460
PspPPI	RGGWCCY	1 cut(s)	388
PsrI	GAACNNNNNNTAC	2 cut(s)	86, 118
PstI	CTGCAG	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	2 cut(s)	238, 350
RsaI	GTAC	2 cut(s)	188, 451
RsaNI	GTAC	2 cut(s)	187, 450
SaqAI	TTAA	2 cut(s)	29, 384
Sau3AI	GATC	3 cut(s)	238, 323, 350
Sau96I	GGNCC	2 cut(s)	388, 460
SduI	GDGCHC	3 cut(s)	76, 132, 264
SetI	ASST	4 cut(s)	52, 155, 223, 438
SfaNI	GCATC	1 cut(s)	192
SfcI	CTRYAG	2 cut(s)	51, 234
SinI	GGWCC	1 cut(s)	388
Sse9I	AATT	3 cut(s)	280, 313, 367
SseBI	AGGCCT	1 cut(s)	293
SsiI	CCGC	1 cut(s)	224
SspMI	CTAG	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	293
StyI	CCWWGG	2 cut(s)	149, 456
TaaI	ACNGT	3 cut(s)	71, 124, 320
TaqI	TCGA	3 cut(s)	207, 322, 372
TasI	AATT	3 cut(s)	280, 313, 367
TatI	WGTACW	2 cut(s)	186, 449
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	2 cut(s)	29, 384
Tru9I	TTAA	2 cut(s)	29, 384
TscAI	CASTG	1 cut(s)	238
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	1 cut(s)	238
VneI	GTGCAC	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	388
XmaJI	CCTAGG	1 cut(s)	149
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.