Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002278

Physical Location & Seq

Genomic Coordinates Forward (+)

62904124 .. 62905566

Gene Structure 1443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59921

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAATTTTCTTTCCACTGCTGCACCTCCCATAGTAATAATTTTAGCAGTAATTCTTTTAGCGGTGATTTTTTGGCCGTTGAAGAACAAGAGATACCCACCTGTTGCCGGAACTGTGTTACACCAACTAAATTATCGCTTCACACTGCACCATTACATGACTGAGCTTGCACGAAATTACAAAACTTACAGGATACTTGACTTGTTCAAATATGTAGTTTACACGGCAGATCCTGCGAATGTTGAATACATGCTCAAGACGAACTTTGAAAACTATGGCAAGGATGTCGGGACTCAGAAGACGTTGGAGCCCATCCCTGGCCTCATCTATAAGTCCGGGAGGGGCCACTTCAAGTACGCGAGCAAGCCTTTCCAGTCTGGAAGGAGGCTCATGCAGTGGATCTGGAGCAGCAGCTGCTGCATGAGCCTTATAAGGCTCCATAACAGGAGCCGCTTCCAGCCCCGGTTCGACATTCATCCCTTCTCCCACTTCAGGAGCATGGGGGGTAGGCTCCTGGTCCACCATATCTTCACCGGCTGGGTCGGCAGGATTGGCGTCAAGTACTTTCGCAGTGACGGCCGCTTCCTCGACAGAACCAAGATTCTGTGGTTAAGGAAGAATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

208

Amino Acids

24.55

Weight (kDa)

10.38

Isoelectric Point (pI)

46.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28456 FvH4_7g28458
prunus_persica	Prupe.2G285100_v2.0.a1 Prupe.3G021600_v2.0.a1
pyrus_communis	pycom11g06300
rosa_chinensis	RchiOBHm_Chr1g0359961 RchiOBHm_Chr1g0375421 RchiOBHm_Chr1g0375501
rosa_multiflora	Rmu_sc0001644.1_g000034 Rmu_sc0003191.1_g000013 Rmu_sc0004191.1_g000013 Rmu_sc0008215.1_g000003 Rmu_sc0031070.1_g000002
rosa_roxburghii	Rroxscaffold_4G00282770 Rroxscaffold_4G00282850 Rroxscaffold_4G00296750
rosa_samantha	Rh1AG287900 Rh1AG400700 Rh1AG401500 Rh1AG402300 Rh1AG403300 Rh1AG403400 Rh1AG403500 Rh1BG200800 Rh1BG253200 Rh1BG253300 Rh1BG363600 Rh1BG363700 Rh1BG366300 Rh1BG366400 Rh1BG366500 Rh1BG366900 Rh1BG367100 Rh1CG270600 Rh1CG270700 Rh1CG376900 Rh1CG379100 Rh1CG379200 Rh1CG379600 Rh1CG379900 Rh2BG274600 Rh2DG289700 Rh7BG011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	431
AccII	CGCG	1 cut(s)	359
AciI	CCGC	3 cut(s)	62, 451, 580
AclWI	GGATC	2 cut(s)	224, 407
AcoI	YGGCCR	2 cut(s)	74, 577
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	1 cut(s)	475
AcyI	GRCGYC	1 cut(s)	555
AfaI	GTAC	2 cut(s)	356, 563
AfiI	CCNNNNNNNGG	3 cut(s)	107, 317, 492
AgsI	TTSAA	5 cut(s)	82, 208, 245, 269, 352
AjnI	CCWGG	2 cut(s)	316, 513
AluBI	AGCT	2 cut(s)	166, 414
AluI	AGCT	2 cut(s)	166, 414
AlwI	GGATC	2 cut(s)	224, 407
AlwNI	CAGNNNCTG	3 cut(s)	233, 414, 417
AoxI	GGCC	4 cut(s)	74, 319, 343, 577
ApeKI	GCWGC	5 cut(s)	20, 408, 411, 414, 417
ApoI	RAATTY	1 cut(s)	4
AspS9I	GGNCC	2 cut(s)	343, 517
AsuC2I	CCSGG	2 cut(s)	337, 463
AsuHPI	GGTGA	2 cut(s)	76, 523
AvaII	GGWCC	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	312
BbsI	GAAGAC	1 cut(s)	305
BbvI	GCAGC	5 cut(s)	7, 401, 404, 420, 423
BccI	CCATC	1 cut(s)	320
BceAI	ACGGC	3 cut(s)	61, 240, 592
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BciT130I	CCWGG	2 cut(s)	318, 515
BciVI	GTATCC	1 cut(s)	186
BcnI	CCSGG	2 cut(s)	337, 463
BfuI	GTATCC	1 cut(s)	186
BisI	GCNGC	7 cut(s)	21, 409, 412, 415, 418, 451, 580
BlsI	GCNGC	7 cut(s)	22, 410, 413, 416, 419, 452, 581
BmcAI	AGTACT	1 cut(s)	563
Bme1390I	CCNGG	4 cut(s)	318, 337, 463, 515
Bme18I	GGWCC	1 cut(s)	517
BmgT120I	GGNCC	2 cut(s)	343, 517
BmiI	GGNNCC	5 cut(s)	309, 344, 437, 449, 512
BmrFI	CCNGG	4 cut(s)	318, 337, 463, 515
BpiI	GAAGAC	1 cut(s)	305
BpmI	CTGGAG	1 cut(s)	424
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	2 cut(s)	337, 463
BsaHI	GRCGYC	1 cut(s)	555
BsaJI	CCNNGG	2 cut(s)	316, 461
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 317, 492
Bse118I	RCCGGY	1 cut(s)	533
Bse1I	ACTGG	1 cut(s)	373
BseBI	CCWGG	2 cut(s)	318, 515
BseDI	CCNNGG	2 cut(s)	316, 461
BseGI	GGATG	3 cut(s)	289, 312, 475
BseLI	CCNNNNNNNGG	3 cut(s)	107, 317, 492
BseMII	CTCAG	2 cut(s)	153, 308
BseNI	ACTGG	1 cut(s)	373
BseX3I	CGGCCG	1 cut(s)	577
BseXI	GCAGC	5 cut(s)	7, 401, 404, 420, 423
BseYI	CCCAGC	1 cut(s)	537
BsgI	GTGCAG	2 cut(s)	6, 131
Bsh1236I	CGCG	1 cut(s)	359
Bsh1285I	CGRYCG	1 cut(s)	580
BshFI	GGCC	4 cut(s)	76, 321, 345, 579
BsiEI	CGRYCG	1 cut(s)	580
BsiSI	CCGG	4 cut(s)	108, 336, 463, 534
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	3 cut(s)	107, 317, 492
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	4 cut(s)	76, 321, 345, 579
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	2 cut(s)	229, 399
BspACI	CCGC	3 cut(s)	62, 451, 580
BspANI	GGCC	4 cut(s)	76, 321, 345, 579
BspCNI	CTCAG	2 cut(s)	154, 307
BspFNI	CGCG	1 cut(s)	359
BspLI	GGNNCC	5 cut(s)	309, 344, 437, 449, 512
BspPI	GGATC	2 cut(s)	224, 407
BsrFI	RCCGGY	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	373
BssAI	RCCGGY	1 cut(s)	533
BssECI	CCNNGG	2 cut(s)	316, 461
BssMI	GATC	2 cut(s)	229, 399
BssNI	GRCGYC	1 cut(s)	555
Bst2UI	CCWGG	2 cut(s)	318, 515
Bst4CI	ACNGT	1 cut(s)	115
BstACI	GRCGYC	1 cut(s)	555
BstAPI	GCANNNNNTGC	3 cut(s)	233, 414, 417
BstC8I	GCNNGC	3 cut(s)	168, 361, 365
BstDEI	CTNAG	2 cut(s)	162, 294
BstF5I	GGATG	3 cut(s)	289, 312, 475
BstFNI	CGCG	1 cut(s)	359
BstKTI	GATC	2 cut(s)	232, 402
BstMBI	GATC	2 cut(s)	229, 399
BstMCI	CGRYCG	1 cut(s)	580
BstMWI	GCNNNNNNNGC	7 cut(s)	233, 414, 417, 423, 543, 552, 576
BstNI	CCWGG	2 cut(s)	318, 515
BstNSI	RCATGY	1 cut(s)	253
BstSCI	CCNGG	4 cut(s)	316, 335, 461, 513
BstUI	CGCG	1 cut(s)	359
BstV1I	GCAGC	5 cut(s)	7, 401, 404, 420, 423
BstV2I	GAAGAC	1 cut(s)	305
BstX2I	RGATCY	2 cut(s)	229, 399
BstYI	RGATCY	2 cut(s)	229, 399
BstZI	CGGCCG	1 cut(s)	577
BsuI	GTATCC	1 cut(s)	186
BsuRI	GGCC	4 cut(s)	76, 321, 345, 579
BtsCI	GGATG	3 cut(s)	289, 312, 475
BtsI	GCAGTG	4 cut(s)	15, 143, 401, 577
BtsIMutI	CAGTG	4 cut(s)	15, 143, 401, 577
Cac8I	GCNNGC	3 cut(s)	168, 361, 365
CaiI	CAGNNNCTG	3 cut(s)	233, 414, 417
Cfr10I	RCCGGY	1 cut(s)	533
Cfr13I	GGNCC	2 cut(s)	343, 517
CseI	GACGC	1 cut(s)	544
Csp6I	GTAC	2 cut(s)	355, 562
CviAII	CATG	5 cut(s)	157, 250, 391, 421, 499
CviQI	GTAC	2 cut(s)	355, 562
DdeI	CTNAG	2 cut(s)	162, 294
DpnI	GATC	2 cut(s)	231, 401
DpnII	GATC	2 cut(s)	229, 399
EaeI	YGGCCR	2 cut(s)	74, 577
EagI	CGGCCG	1 cut(s)	577
EclXI	CGGCCG	1 cut(s)	577
Eco24I	GRGCYC	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	517
Eco52I	CGGCCG	1 cut(s)	577
Eco57I	CTGAAG	1 cut(s)	475
EcoRII	CCWGG	2 cut(s)	316, 513
EcoT38I	GRGCYC	1 cut(s)	312
FaeI	CATG	5 cut(s)	160, 253, 394, 424, 502
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	5 cut(s)	156, 249, 390, 420, 498
Fnu4HI	GCNGC	7 cut(s)	21, 409, 412, 415, 418, 451, 580
FokI	GGATG	3 cut(s)	296, 299, 462
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	7 cut(s)	21, 409, 412, 415, 418, 451, 580
GluI	GCNGC	7 cut(s)	21, 409, 412, 415, 418, 451, 580
GsaI	CCCAGC	1 cut(s)	541
GsuI	CTGGAG	1 cut(s)	424
HaeIII	GGCC	4 cut(s)	76, 321, 345, 579
HapII	CCGG	4 cut(s)	108, 336, 463, 534
HgaI	GACGC	1 cut(s)	544
Hin1I	GRCGYC	1 cut(s)	555
Hin1II	CATG	5 cut(s)	160, 253, 394, 424, 502
HinfI	GANTC	3 cut(s)	292, 601, 619
HpaII	CCGG	4 cut(s)	108, 336, 463, 534
HphI	GGTGA	2 cut(s)	76, 523
Hpy166II	GTNNAC	2 cut(s)	220, 520
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	5 cut(s)	256, 289, 378, 403, 493
Hpy8I	GTNNAC	2 cut(s)	220, 520
HpyAV	CCTTC	2 cut(s)	375, 490
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	5 cut(s)	23, 148, 170, 394, 420
HpyF10VI	GCNNNNNNNGC	7 cut(s)	233, 414, 417, 423, 543, 552, 576
HpyF3I	CTNAG	2 cut(s)	162, 294
HpySE526I	ACGT	1 cut(s)	302
Hsp92I	GRCGYC	1 cut(s)	555
Hsp92II	CATG	5 cut(s)	160, 253, 394, 424, 502
Kzo9I	GATC	2 cut(s)	229, 399
LmnI	GCTCC	6 cut(s)	307, 405, 441, 447, 495, 516
Lsp1109I	GCAGC	5 cut(s)	7, 401, 404, 420, 423
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	2 cut(s)	117, 572
MalI	GATC	2 cut(s)	231, 401
MboI	GATC	2 cut(s)	229, 399
MboII	GAAGA	3 cut(s)	94, 310, 520
MflI	RGATCY	2 cut(s)	229, 399
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	5 cut(s)	4, 39, 51, 130, 175
MlyI	GAGTC	1 cut(s)	286
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	5 cut(s)	36, 332, 333, 378, 596
MseI	TTAA	1 cut(s)	611
MspA1I	CMGCKG	1 cut(s)	414
MspI	CCGG	4 cut(s)	108, 336, 463, 534
MspR9I	CCNGG	4 cut(s)	318, 337, 463, 515
MvaI	CCWGG	2 cut(s)	318, 515
MvnI	CGCG	1 cut(s)	359
MwoI	GCNNNNNNNGC	7 cut(s)	233, 414, 417, 423, 543, 552, 576
NciI	CCSGG	2 cut(s)	337, 463
NdeII	GATC	2 cut(s)	229, 399
NlaIII	CATG	5 cut(s)	160, 253, 394, 424, 502
NlaIV	GGNNCC	5 cut(s)	309, 344, 437, 449, 512
NmuCI	GTSAC	1 cut(s)	572
NspI	RCATGY	1 cut(s)	253
PfeI	GAWTC	2 cut(s)	601, 619
PfoI	TCCNGGA	1 cut(s)	335
PkrI	GCNGC	7 cut(s)	22, 410, 413, 416, 419, 452, 581
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
PsiI	TTATAA	1 cut(s)	431
Psp6I	CCWGG	2 cut(s)	316, 513
PspFI	CCCAGC	1 cut(s)	537
PspGI	CCWGG	2 cut(s)	316, 513
PspN4I	GGNNCC	5 cut(s)	309, 344, 437, 449, 512
PspPI	GGNCC	2 cut(s)	343, 517
PsrI	GAACNNNNNNTAC	2 cut(s)	77, 109
PstNI	CAGNNNCTG	3 cut(s)	233, 414, 417
PsuI	RGATCY	2 cut(s)	229, 399
PvuII	CAGCTG	1 cut(s)	414
RsaI	GTAC	2 cut(s)	356, 563
RsaNI	GTAC	2 cut(s)	355, 562
SaqAI	TTAA	1 cut(s)	611
SatI	GCNGC	7 cut(s)	21, 409, 412, 415, 418, 451, 580
Sau3AI	GATC	2 cut(s)	229, 399
Sau96I	GGNCC	2 cut(s)	343, 517
ScaI	AGTACT	1 cut(s)	563
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	4 cut(s)	318, 337, 463, 515
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	5 cut(s)	28, 103, 168, 305, 416
SinI	GGWCC	1 cut(s)	517
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	5 cut(s)	4, 39, 51, 130, 175
SsiI	CCGC	3 cut(s)	62, 451, 580
StyD4I	CCNGG	4 cut(s)	316, 335, 461, 513
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	2 cut(s)	468, 588
TasI	AATT	5 cut(s)	4, 39, 51, 130, 175
TatI	WGTACW	1 cut(s)	561
TauI	GCSGC	2 cut(s)	453, 582
TfiI	GAWTC	2 cut(s)	601, 619
Tru1I	TTAA	1 cut(s)	611
Tru9I	TTAA	1 cut(s)	611
TscAI	CASTG	4 cut(s)	22, 150, 401, 577
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	5 cut(s)	20, 408, 411, 414, 417
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	2 cut(s)	17, 464
TspRI	CASTG	4 cut(s)	22, 150, 401, 577
VpaK11BI	GGWCC	1 cut(s)	517
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	1 cut(s)	253
ZrmI	AGTACT	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.