Rmu_sc0031070.1_g000002

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031070.1
OG0002278
Physical Location & Seq
Reverse (-)
1580 .. 1876
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031070.1_g000002.1.cds

Sequence Viewer

Length: 297 bp
atggattttgcttccgcggcagtagcattgagtttagcgttagttttagctgtagttgtgattagacaccatgcccgaagattgcgtgacaagaacaagagataccatcctattgctggaactgtcgtgcaccaacttatcaacttccctaggctacaccattacatgactgagcttgcaggcaagtattacacttacaggatgctcgacttgttcaaaggtgcggtttacacagcagatcctgcaaatgttgaatatgtgctcaaaacaaacttcgctaattatggcaaggtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

98

Amino Acids

11.21

Weight (kDa)

9.87

Isoelectric Point (pI)

20.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 17
AciI CCGC 3 cut(s) 15, 17, 224
AclWI GGATC 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 2 cut(s) 217, 254
AluBI AGCT 2 cut(s) 50, 175
AluI AGCT 2 cut(s) 50, 175
Alw21I GWGCWC 2 cut(s) 132, 264
Alw44I GTGCAC 1 cut(s) 128
AlwI GGATC 1 cut(s) 233
AlwNI CAGNNNCTG 1 cut(s) 242
ApaLI GTGCAC 1 cut(s) 128
AspA2I CCTAGG 1 cut(s) 149
AvrII CCTAGG 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 132
Bbv12I GWGCWC 2 cut(s) 132, 264
BccI CCATC 1 cut(s) 114
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 51
BisI GCNGC 1 cut(s) 18
BlnI CCTAGG 1 cut(s) 149
BlsI GCNGC 1 cut(s) 19
BmsI GCATC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 15, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 15, 149
BseGI GGATG 2 cut(s) 106, 207
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMII CTCAG 1 cut(s) 162
BseSI GKGCMC 1 cut(s) 132
Bsh1236I CGCG 1 cut(s) 17
BsiHKAI GWGCWC 2 cut(s) 132, 264
BslI CCNNNNNNNGG 1 cut(s) 116
Bsp1286I GDGCHC 2 cut(s) 132, 264
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 3 cut(s) 15, 17, 224
BspCNI CTCAG 1 cut(s) 163
BspFNI CGCG 1 cut(s) 17
BspPI GGATC 1 cut(s) 233
BssECI CCNNGG 2 cut(s) 15, 149
BssMI GATC 1 cut(s) 238
BssT1I CCWWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 124
BstAPI GCANNNNNTGC 1 cut(s) 242
BstC8I GCNNGC 2 cut(s) 177, 181
BstDEI CTNAG 1 cut(s) 171
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 2 cut(s) 106, 207
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 3 cut(s) 17, 23, 242
BstSFI CTRYAG 1 cut(s) 51
BstSLI GKGCMC 1 cut(s) 132
BstUI CGCG 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 2 cut(s) 106, 207
Cac8I GCNNGC 2 cut(s) 177, 181
CaiI CAGNNNCTG 1 cut(s) 242
Cfr42I CCGCGG 1 cut(s) 18
CviAII CATG 2 cut(s) 71, 166
CviJI RGCY 3 cut(s) 50, 154, 175
CviKI_1 RGCY 3 cut(s) 50, 154, 175
DdeI CTNAG 1 cut(s) 171
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 2 cut(s) 74, 169
FaiI YATR 5 cut(s) 72, 167, 258, 285, 295
FatI CATG 2 cut(s) 70, 165
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 2 cut(s) 93, 214
Fsp4HI GCNGC 1 cut(s) 18
FspBI CTAG 1 cut(s) 150
GluI GCNGC 1 cut(s) 18
Hin1II CATG 2 cut(s) 74, 169
Hpy166II GTNNAC 2 cut(s) 130, 229
Hpy8I GTNNAC 2 cut(s) 130, 229
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 3 cut(s) 130, 179, 245
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 23, 242
HpyF3I CTNAG 1 cut(s) 171
Hsp92II CATG 2 cut(s) 74, 169
KspI CCGCGG 1 cut(s) 18
Kzo9I GATC 1 cut(s) 238
LpnPI CCDG 4 cut(s) 102, 165, 184, 255
LweI GCATC 1 cut(s) 192
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 86
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 1 cut(s) 90
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 2 cut(s) 132, 264
MluCI AATT 1 cut(s) 280
MspA1I CMGCKG 1 cut(s) 17
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 3 cut(s) 17, 23, 242
NdeII GATC 1 cut(s) 238
NlaIII CATG 2 cut(s) 74, 169
NmuCI GTSAC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 19
PsrI GAACNNNNNNTAC 2 cut(s) 86, 118
PstNI CAGNNNCTG 1 cut(s) 242
PsuI RGATCY 1 cut(s) 238
SacII CCGCGG 1 cut(s) 18
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 1 cut(s) 238
SduI GDGCHC 2 cut(s) 132, 264
SetI ASST 4 cut(s) 52, 177, 223, 294
SfaNI GCATC 1 cut(s) 192
SfcI CTRYAG 1 cut(s) 51
Sfr303I CCGCGG 1 cut(s) 18
SgrBI CCGCGG 1 cut(s) 18
Sse9I AATT 1 cut(s) 280
SsiI CCGC 3 cut(s) 15, 17, 224
SspMI CTAG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 207
TasI AATT 1 cut(s) 280
TauI GCSGC 1 cut(s) 20
TseFI GTSAC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 86
VneI GTGCAC 1 cut(s) 128
XcmI CCANNNNNNNNNTGG 1 cut(s) 113
XmaJI CCTAGG 1 cut(s) 149
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.