Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002278

Physical Location & Seq

Genomic Coordinates Forward (+)

16799768 .. 16800064

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00296750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGATTTTGCTTCCACGGCGGTAGCATTAAGTTTAGCGTTAGTTTTAGCTGTAGTTGCAGTTAGACACCGTGCCCGAAGATTGCATGACAAGAACAAGAGATACCATCCTGTTGCCGGAACTGTCGTGCACCAACTTATCAACTTCCCTAGGTTACACCATTACATGACTGAACTTGCGGGTAAGTATAACACTTACAGGATGATCGACTTGTTCAAAGGTGCGGTTTACACAGCAGATCCTGCAAATGTGGAATATGTGCTCAAAACAAACTTCACTAATTATGGCAAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

98

Amino Acids

11.16

Weight (kDa)

9.93

Isoelectric Point (pI)

18.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28456 FvH4_7g28458
prunus_persica	Prupe.2G285100_v2.0.a1 Prupe.3G021600_v2.0.a1
pyrus_communis	pycom11g06300
rosa_chinensis	RchiOBHm_Chr1g0359961 RchiOBHm_Chr1g0375421 RchiOBHm_Chr1g0375501
rosa_multiflora	Rmu_sc0001644.1_g000034 Rmu_sc0003191.1_g000013 Rmu_sc0004191.1_g000013 Rmu_sc0008215.1_g000003 Rmu_sc0031070.1_g000002
rosa_roxburghii	Rroxscaffold_4G00282770 Rroxscaffold_4G00282850 Rroxscaffold_4G00296750
rosa_samantha	Rh1AG287900 Rh1AG400700 Rh1AG401500 Rh1AG402300 Rh1AG403300 Rh1AG403400 Rh1AG403500 Rh1BG200800 Rh1BG253200 Rh1BG253300 Rh1BG363600 Rh1BG363700 Rh1BG366300 Rh1BG366400 Rh1BG366500 Rh1BG366900 Rh1BG367100 Rh1CG270600 Rh1CG270700 Rh1CG376900 Rh1CG379100 Rh1CG379200 Rh1CG379600 Rh1CG379900 Rh2BG274600 Rh2DG289700 Rh7BG011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	20, 179, 224
AclWI	GGATC	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	217
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw21I	GWGCWC	2 cut(s)	132, 264
Alw44I	GTGCAC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	233
AlwNI	CAGNNNCTG	1 cut(s)	242
ApaLI	GTGCAC	1 cut(s)	128
AspA2I	CCTAGG	1 cut(s)	149
AvrII	CCTAGG	1 cut(s)	149
BaeGI	GKGCMC	2 cut(s)	76, 132
Bbv12I	GWGCWC	2 cut(s)	132, 264
BccI	CCATC	1 cut(s)	114
BceAI	ACGGC	1 cut(s)	33
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	51
BlnI	CCTAGG	1 cut(s)	149
BsaJI	CCNNGG	2 cut(s)	15, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	15, 149
BseGI	GGATG	2 cut(s)	106, 207
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseSI	GKGCMC	2 cut(s)	76, 132
BsiHKAI	GWGCWC	2 cut(s)	132, 264
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	1 cut(s)	116
Bsp1286I	GDGCHC	3 cut(s)	76, 132, 264
Bsp143I	GATC	2 cut(s)	204, 238
BspACI	CCGC	3 cut(s)	20, 179, 224
BspPI	GGATC	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	15, 149
BssMI	GATC	2 cut(s)	204, 238
BssT1I	CCWWGG	1 cut(s)	149
Bst4CI	ACNGT	2 cut(s)	71, 124
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	2 cut(s)	106, 207
BstKTI	GATC	2 cut(s)	207, 241
BstMBI	GATC	2 cut(s)	204, 238
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 56, 242
BstSFI	CTRYAG	1 cut(s)	51
BstSLI	GKGCMC	2 cut(s)	76, 132
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	2 cut(s)	106, 207
CaiI	CAGNNNCTG	1 cut(s)	242
CviAII	CATG	2 cut(s)	86, 166
CviJI	RGCY	1 cut(s)	50
CviKI_1	RGCY	1 cut(s)	50
DpnI	GATC	2 cut(s)	206, 240
DpnII	GATC	2 cut(s)	204, 238
Eco130I	CCWWGG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	2 cut(s)	89, 169
FaiI	YATR	6 cut(s)	87, 167, 189, 258, 285, 295
FatI	CATG	2 cut(s)	85, 165
FauI	CCCGC	1 cut(s)	172
FokI	GGATG	2 cut(s)	93, 214
FspBI	CTAG	1 cut(s)	150
HapII	CCGG	1 cut(s)	117
Hin1II	CATG	2 cut(s)	89, 169
HpaII	CCGG	1 cut(s)	117
Hpy166II	GTNNAC	2 cut(s)	130, 229
Hpy8I	GTNNAC	2 cut(s)	130, 229
HpyCH4III	ACNGT	2 cut(s)	71, 124
HpyCH4V	TGCA	4 cut(s)	59, 85, 130, 245
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 56, 242
Hsp92II	CATG	2 cut(s)	89, 169
Kzo9I	GATC	2 cut(s)	204, 238
LpnPI	CCDG	4 cut(s)	123, 130, 184, 255
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	153
MalI	GATC	2 cut(s)	206, 240
MboI	GATC	2 cut(s)	204, 238
MboII	GAAGA	1 cut(s)	90
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	3 cut(s)	76, 132, 264
MluCI	AATT	1 cut(s)	280
MseI	TTAA	1 cut(s)	29
MspI	CCGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	3 cut(s)	17, 56, 242
NdeII	GATC	2 cut(s)	204, 238
NlaIII	CATG	2 cut(s)	89, 169
PsrI	GAACNNNNNNTAC	2 cut(s)	86, 118
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	29
Sau3AI	GATC	2 cut(s)	204, 238
SduI	GDGCHC	3 cut(s)	76, 132, 264
SetI	ASST	4 cut(s)	52, 155, 223, 294
SfcI	CTRYAG	1 cut(s)	51
Sse9I	AATT	1 cut(s)	280
SsiI	CCGC	3 cut(s)	20, 179, 224
SspMI	CTAG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	2 cut(s)	71, 124
TaqI	TCGA	1 cut(s)	207
TasI	AATT	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
VneI	GTGCAC	1 cut(s)	128
XmaJI	CCTAGG	1 cut(s)	149
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.