Rh2DG289700

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002278
Physical Location & Seq
Reverse (-)
33951133 .. 33957334
6202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG289700.1

Sequence Viewer

Length: 300 bp
ATGGATTTTCTTTCCACTCCCTTACCTCCCATTGCAATAGGTTTATTTGCAGTACTTGTTTTGGCAGTAATCTTTCTGCGGAAGAAGAACAAGAAATACCCTCCTGTTGCCGGAACTGTCATACACCAACTGATCAATGTTCCAAGGCTGCACCATTACATGACTGAGCTTGCATGCAAGTACAAAACTTATAGGATGCTCGACTTGTTCAGATATGCTGTCTACACTGTAGATCCTGCAAATGTTGAATACATTCTCAAAACAAACTTTGCAAACTATGGCAAGGCCGAATTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

99

Amino Acids

11.4

Weight (kDa)

9.55

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 222
AciI CCGC 1 cut(s) 79
AclWI GGATC 1 cut(s) 227
AcsI RAATTY 1 cut(s) 290
AfaI GTAC 2 cut(s) 54, 182
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 1 cut(s) 248
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
AlwI GGATC 1 cut(s) 227
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 148
ApoI RAATTY 1 cut(s) 290
Asp700I GAANNNNTTC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 135
BclI TGATCA 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 228
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
BmcAI AGTACT 1 cut(s) 54
BmsI GCATC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse3DI GCAATG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 135
BsgI GTGCAG 1 cut(s) 134
BshFI GGCC 1 cut(s) 287
BsiSI CCGG 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 110
BsnI GGCC 1 cut(s) 287
Bsp143I GATC 2 cut(s) 132, 232
BspACI CCGC 1 cut(s) 79
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 1 cut(s) 157
BspPI GGATC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 143
BssMI GATC 2 cut(s) 132, 232
BssT1I CCWWGG 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 118, 229
BstC8I GCNNGC 2 cut(s) 171, 175
BstDEI CTNAG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 201
BstKTI GATC 2 cut(s) 135, 235
BstMBI GATC 2 cut(s) 132, 232
BstNSI RCATGY 1 cut(s) 177
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 135
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 1 cut(s) 287
BtsCI GGATG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 171, 175
Csp6I GTAC 2 cut(s) 53, 181
CviAII CATG 2 cut(s) 160, 174
CviJI RGCY 3 cut(s) 148, 169, 287
CviKI_1 RGCY 3 cut(s) 148, 169, 287
CviQI GTAC 2 cut(s) 53, 181
DdeI CTNAG 1 cut(s) 165
DpnI GATC 2 cut(s) 134, 234
DpnII GATC 2 cut(s) 132, 232
Eco130I CCWWGG 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 143
FaeI CATG 2 cut(s) 163, 177
FaiI YATR 6 cut(s) 122, 161, 175, 192, 216, 279
FatI CATG 2 cut(s) 159, 173
FbaI TGATCA 1 cut(s) 132
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 1 cut(s) 149
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 1 cut(s) 149
GluI GCNGC 1 cut(s) 149
HaeIII GGCC 1 cut(s) 287
HapII CCGG 1 cut(s) 111
Hin1II CATG 2 cut(s) 163, 177
HpaII CCGG 1 cut(s) 111
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 1 cut(s) 212
Hpy8I GTNNAC 1 cut(s) 223
HpyCH4III ACNGT 2 cut(s) 118, 229
HpyCH4V TGCA 7 cut(s) 35, 50, 151, 173, 177, 239, 272
HpyF3I CTNAG 1 cut(s) 165
Hsp92II CATG 2 cut(s) 163, 177
Ksp22I TGATCA 1 cut(s) 132
Kzo9I GATC 2 cut(s) 132, 232
LpnPI CCDG 3 cut(s) 117, 124, 249
Lsp1109I GCAGC 1 cut(s) 135
LweI GCATC 1 cut(s) 186
MalI GATC 2 cut(s) 134, 234
MboI GATC 2 cut(s) 132, 232
MboII GAAGA 2 cut(s) 94, 97
MflI RGATCY 1 cut(s) 232
MluCI AATT 1 cut(s) 290
MnlI CCTC 2 cut(s) 36, 111
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 1 cut(s) 298
MspI CCGG 1 cut(s) 111
NdeII GATC 2 cut(s) 132, 232
NlaIII CATG 2 cut(s) 163, 177
NspI RCATGY 1 cut(s) 177
PaeI GCATGC 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 252
PkrI GCNGC 1 cut(s) 150
PsrI GAACNNNNNNTAC 2 cut(s) 80, 112
PsuI RGATCY 1 cut(s) 232
RsaI GTAC 2 cut(s) 54, 182
RsaNI GTAC 2 cut(s) 53, 181
SaqAI TTAA 1 cut(s) 298
SatI GCNGC 1 cut(s) 149
Sau3AI GATC 2 cut(s) 132, 232
ScaI AGTACT 1 cut(s) 54
SetI ASST 3 cut(s) 28, 43, 171
SfaNI GCATC 1 cut(s) 186
SfcI CTRYAG 1 cut(s) 228
SphI GCATGC 1 cut(s) 177
Sse9I AATT 1 cut(s) 290
SsiI CCGC 1 cut(s) 79
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 2 cut(s) 118, 229
TaqI TCGA 1 cut(s) 201
TasI AATT 1 cut(s) 290
TatI WGTACW 2 cut(s) 52, 180
Tru1I TTAA 1 cut(s) 298
Tru9I TTAA 1 cut(s) 298
TscAI CASTG 1 cut(s) 232
TseI GCWGC 1 cut(s) 148
TspRI CASTG 1 cut(s) 232
XapI RAATTY 1 cut(s) 290
XceI RCATGY 1 cut(s) 177
XmiI GTMKAC 1 cut(s) 222
XmnI GAANNNNTTC 1 cut(s) 252
ZrmI AGTACT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.