Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002278

Physical Location & Seq

Genomic Coordinates Reverse (-)

4892738 .. 4894368

Gene Structure 1631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00282770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCTGAGAGACATCGACAGTGGAATATTCGAAACCAATGCAGTGAAACTTGCTGGGATAATTTATGAAGCTGTAACCTGTGACCGAGCAATAGAGATCCAAGACTTGTTTATGAAGTCATCTCTAGATTCAATCATCAAGATTCTACTTCATATTGAATTAGACACCATGTGTGGAACAAATGAAGAAGGTATCCGGTTTTCCAATGCGTTTGATGAAGCAAACGAAATTACCCTGTATCGGTATGTTGATTCCTTCTGGAAGGTAAAACGGTTCTCAAATATTGGATCTGAAGCAGTTCTAAGGAATATTATCAAAGTGTTAAAGAAAAGAGACTTTATTTCAAGGCTTTTGGAATTGAGAGGAACTGATCCAAAGTACTTAAAAGACATGATCCTCAATTTTATTGTTGCCGGAAAAGACACGGATGCAAAGGATGCAATTTCTCGGGGGGATGATGCAGAGGAGTTTAGGCCAGAGAGATGGCTCGACCATAAAGGCCTTTTCCAGCAAGAAAGCCCCTTTAAGTTCACAACCTTCCAGGCAGGTCTAAGATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

186

Amino Acids

21.43

Weight (kDa)

5.35

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28456 FvH4_7g28458
prunus_persica	Prupe.2G285100_v2.0.a1 Prupe.3G021600_v2.0.a1
pyrus_communis	pycom11g06300
rosa_chinensis	RchiOBHm_Chr1g0359961 RchiOBHm_Chr1g0375421 RchiOBHm_Chr1g0375501
rosa_multiflora	Rmu_sc0001644.1_g000034 Rmu_sc0003191.1_g000013 Rmu_sc0004191.1_g000013 Rmu_sc0008215.1_g000003 Rmu_sc0031070.1_g000002
rosa_roxburghii	Rroxscaffold_4G00282770 Rroxscaffold_4G00282850 Rroxscaffold_4G00296750
rosa_samantha	Rh1AG287900 Rh1AG400700 Rh1AG401500 Rh1AG402300 Rh1AG403300 Rh1AG403400 Rh1AG403500 Rh1BG200800 Rh1BG253200 Rh1BG253300 Rh1BG363600 Rh1BG363700 Rh1BG366300 Rh1BG366400 Rh1BG366500 Rh1BG366900 Rh1BG367100 Rh1CG270600 Rh1CG270700 Rh1CG376900 Rh1CG379100 Rh1CG379200 Rh1CG379600 Rh1CG379900 Rh2BG274600 Rh2DG289700 Rh7BG011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	536
AclWI	GGATC	4 cut(s)	91, 295, 365, 388
AcuI	CTGAAG	1 cut(s)	312
AdeI	CACNNNGTG	1 cut(s)	171
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	3 cut(s)	132, 158, 345
AjnI	CCWGG	1 cut(s)	540
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
Alw26I	GTCTC	2 cut(s)	3, 327
AlwI	GGATC	4 cut(s)	91, 295, 365, 388
Ama87I	CYCGRG	1 cut(s)	447
AoxI	GGCC	2 cut(s)	473, 499
Asp700I	GAANNNNTTC	1 cut(s)	297
AsuII	TTCGAA	1 cut(s)	30
AvaI	CYCGRG	1 cut(s)	447
BccI	CCATC	1 cut(s)	477
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	1 cut(s)	542
BciVI	GTATCC	1 cut(s)	203
BcoDI	GTCTC	2 cut(s)	3, 327
BfaI	CTAG	1 cut(s)	125
BfuAI	ACCTGC	1 cut(s)	536
BfuI	GTATCC	1 cut(s)	203
BmcAI	AGTACT	1 cut(s)	380
Bme1390I	CCNGG	1 cut(s)	542
BmeT110I	CYCGRG	1 cut(s)	447
BmrFI	CCNGG	1 cut(s)	542
BmsI	GCATC	3 cut(s)	418, 427, 448
Bpu14I	TTCGAA	1 cut(s)	30
BsaWI	WCCGGW	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	542
BseGI	GGATG	3 cut(s)	433, 442, 460
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseRI	GAGGAG	1 cut(s)	479
BseYI	CCCAGC	1 cut(s)	53
BshFI	GGCC	2 cut(s)	475, 501
BsiHKCI	CYCGRG	1 cut(s)	447
BsiSI	CCGG	2 cut(s)	196, 414
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	2 cut(s)	3, 327
BsnI	GGCC	2 cut(s)	475, 501
BsoBI	CYCGRG	1 cut(s)	447
Bsp119I	TTCGAA	1 cut(s)	30
Bsp143I	GATC	4 cut(s)	96, 287, 370, 393
BspANI	GGCC	2 cut(s)	475, 501
BspMI	ACCTGC	1 cut(s)	536
BspPI	GGATC	4 cut(s)	91, 295, 365, 388
BspT104I	TTCGAA	1 cut(s)	30
BssMI	GATC	4 cut(s)	96, 287, 370, 393
Bst2UI	CCWGG	1 cut(s)	542
Bst4CI	ACNGT	2 cut(s)	20, 273
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstBI	TTCGAA	1 cut(s)	30
BstDEI	CTNAG	3 cut(s)	5, 302, 551
BstF5I	GGATG	3 cut(s)	433, 442, 460
BstKTI	GATC	4 cut(s)	99, 290, 373, 396
BstMAI	GTCTC	2 cut(s)	3, 327
BstMBI	GATC	4 cut(s)	96, 287, 370, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNI	CCWGG	1 cut(s)	542
BstSCI	CCNGG	1 cut(s)	540
BstX2I	RGATCY	2 cut(s)	96, 287
BstXI	CCANNNNNNTGG	1 cut(s)	483
BstYI	RGATCY	2 cut(s)	96, 287
BsuI	GTATCC	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	475, 501
BtsCI	GGATG	3 cut(s)	433, 442, 460
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	2 cut(s)	25, 48
BveI	ACCTGC	1 cut(s)	536
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	2 cut(s)	169, 391
CviJI	RGCY	6 cut(s)	71, 349, 475, 487, 501, 519
CviKI_1	RGCY	6 cut(s)	71, 349, 475, 487, 501, 519
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	3 cut(s)	5, 302, 551
DpnI	GATC	4 cut(s)	98, 289, 372, 395
DpnII	GATC	4 cut(s)	96, 287, 370, 393
DraIII	CACNNNGTG	1 cut(s)	171
Eco147I	AGGCCT	1 cut(s)	501
Eco57I	CTGAAG	1 cut(s)	312
Eco88I	CYCGRG	1 cut(s)	447
EcoRII	CCWGG	1 cut(s)	540
FaeI	CATG	2 cut(s)	172, 394
FaiI	YATR	7 cut(s)	66, 113, 153, 170, 246, 392, 495
FatI	CATG	2 cut(s)	168, 390
FokI	GGATG	3 cut(s)	440, 449, 467
FspBI	CTAG	1 cut(s)	125
GsaI	CCCAGC	1 cut(s)	57
HaeIII	GGCC	2 cut(s)	475, 501
HapII	CCGG	2 cut(s)	196, 414
Hin1II	CATG	2 cut(s)	172, 394
HinfI	GANTC	3 cut(s)	128, 142, 251
HpaII	CCGG	2 cut(s)	196, 414
Hpy166II	GTNNAC	1 cut(s)	531
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	3 cut(s)	125, 139, 259
Hpy8I	GTNNAC	1 cut(s)	531
HpyAV	CCTTC	4 cut(s)	182, 256, 265, 547
HpyCH4III	ACNGT	2 cut(s)	20, 273
HpyCH4V	TGCA	4 cut(s)	41, 431, 440, 461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	3 cut(s)	5, 302, 551
Hsp92II	CATG	2 cut(s)	172, 394
Kzo9I	GATC	4 cut(s)	96, 287, 370, 393
LweI	GCATC	3 cut(s)	418, 427, 448
MaeI	CTAG	1 cut(s)	125
MaeIII	GTNAC	2 cut(s)	73, 80
MalI	GATC	4 cut(s)	98, 289, 372, 395
MboI	GATC	4 cut(s)	96, 287, 370, 393
MboII	GAAGA	1 cut(s)	197
MflI	RGATCY	2 cut(s)	96, 287
MluCI	AATT	6 cut(s)	60, 158, 228, 356, 400, 441
MnlI	CCTC	3 cut(s)	356, 407, 457
MroXI	GAANNNNTTC	1 cut(s)	297
MseI	TTAA	4 cut(s)	323, 383, 525, 559
MspI	CCGG	2 cut(s)	196, 414
MspR9I	CCNGG	1 cut(s)	542
MvaI	CCWGG	1 cut(s)	542
MwoI	GCNNNNNNNGC	1 cut(s)	437
NdeII	GATC	4 cut(s)	96, 287, 370, 393
NlaIII	CATG	2 cut(s)	172, 394
NmuCI	GTSAC	1 cut(s)	80
NspV	TTCGAA	1 cut(s)	30
PceI	AGGCCT	1 cut(s)	501
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	128, 142, 251
Psp6I	CCWGG	1 cut(s)	540
PspFI	CCCAGC	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	540
PsuI	RGATCY	2 cut(s)	96, 287
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
SaqAI	TTAA	4 cut(s)	323, 383, 525, 559
Sau3AI	GATC	4 cut(s)	96, 287, 370, 393
ScaI	AGTACT	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	542
SetI	ASST	6 cut(s)	73, 80, 193, 267, 539, 550
SfaNI	GCATC	3 cut(s)	418, 427, 448
SfuI	TTCGAA	1 cut(s)	30
Sse9I	AATT	6 cut(s)	60, 158, 228, 356, 400, 441
SseBI	AGGCCT	1 cut(s)	501
SspI	AATATT	3 cut(s)	27, 283, 310
SspMI	CTAG	1 cut(s)	125
StuI	AGGCCT	1 cut(s)	501
StyD4I	CCNGG	1 cut(s)	540
TaaI	ACNGT	2 cut(s)	20, 273
TaqI	TCGA	3 cut(s)	15, 30, 489
TaqII	GACCGA	1 cut(s)	99
TasI	AATT	6 cut(s)	60, 158, 228, 356, 400, 441
TatI	WGTACW	1 cut(s)	378
TfiI	GAWTC	3 cut(s)	128, 142, 251
Tru1I	TTAA	4 cut(s)	323, 383, 525, 559
Tru9I	TTAA	4 cut(s)	323, 383, 525, 559
TscAI	CASTG	2 cut(s)	25, 48
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	5 cut(s)	81, 128, 140, 198, 231
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	2 cut(s)	25, 48
XbaI	TCTAGA	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	1 cut(s)	125
ZrmI	AGTACT	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.