Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002881

Physical Location & Seq

Genomic Coordinates Reverse (-)

14048128 .. 14049709

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1042300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTCTCAAGAAATATCAGTTGCAGAAGAGCAAGCAGTGAAAGCCTATGGATGGGCTGCTAGAGATTCCACACAAGTTCTCTCTCCGTTCCACTTCACCAGGAGAACTGCTGGTAATAATGACATCAACATCAAGATACTATATTGTGGAATTTGCCACTCGGACCTTCACTTTGCTAAGGACGAAGTTGGAATGACCAGCGAAGCGACAAAGGTTGGGTGCAATGTCACAAAGTTCAAAGTAGGAGACATGGCTGGAGTTGGGTGCATGGTGGGTTCATGTCGCTCATGTGACAACTGCACACAGGACTCGGAAAATTACTGCCCCAAAATGGTGTGGATGTACAACAATCCTAACAAAGACCGACCAAGAACATTTGGTGGATACTCCAACAAGTTAGTAGTTGATGAACACTTTGCGGTCCAAATCCCAGAAAACTTGTCGTTGCAAGGTACTGCTCCCATGCTCTGTGCCAGGATCACAGTGTACGGCCCGATGAGATACATTGGACTCATAGAGCCTGGAGCAAAGGTGACTGTAATAAGTACTTCTCCGAATAAGAAGAAGGAAGCCATGGAACAGCTTGGTGTGGATGAATTTCTGATTAGTCATGACCAGGAGCAATTGAAGGCTGCCATGGATACAATGGACGGTACCATCGATACAGTTTCGGTTCCTCACCCTCTCTTGTCATTGATTCAGTTGTTGAAGACCAATGGAAAACTAATTCTGCTGGGTGCTCCAGTTCAACCTCCTGAACTTTCCAGTTTTCCCCTTAAAATTGGGAAGCTTATTGCTGGTAGTGCGACTGGGGGAATGAAAGAAACACAAGAGATGATAGATTTTGCCGCAAAGCATAATATCACAGCGGACGTCGAAGTTATTCCGATGGATTACGTCAACACCGCACTTGAAAGAGTTGCCAAGGCTGATTTTAAGTACCGCTTTGTCATTGATGTGGCAAACACTTTGAATTCTCCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

329

Amino Acids

35.97

Weight (kDa)

5.84

Isoelectric Point (pI)

35.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	39 - 145	1.9e-11	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	175 - 284	3e-12	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002881)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g46010
malus_domestica	MD00G1085800.v1.1 MD01G1041700.v1.1 MD01G1042100.v1.1 MD01G1042300.v1.1 MD15G1309000.v1.1
prunus_persica	Prupe.6G205400_v2.0.a1 Prupe.6G206100_v2.0.a1 Prupe.6G206500_v2.0.a1 Prupe.6G206600_v2.0.a1
pyrus_communis	pycom01g06930 pycom01g06940
rosa_chinensis	RchiOBHm_Chr2g0103721 RchiOBHm_Chr2g0110621 RchiOBHm_Chr2g0110641 RchiOBHm_Chr6g0270271
rosa_laevigata	RLG00000017252 RLG00000017827 RLG00000017828
rosa_multiflora	Rmu_sc0000389.1_g000030 Rmu_sc0000389.1_g000036 Rmu_sc0001852.1_g000004
rosa_roxburghii	Rroxscaffold_2G00133090 Rroxscaffold_2G00139450
rosa_rugosa	Rorug02G0116900 Rorug02G0168100 Rorug02G0168100 Rorug02G0168300 Rorug06G0054100
rosa_samantha	Rh2AG165700 Rh2BG173000 Rh2BG230200 Rh2BG230800 Rh2CG171700 Rh2CG223000
rosa_wichuraiana	Rw0G019470 Rw2G012980 Rw2G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	876
Acc65I	GGTACC	1 cut(s)	653
AccB1I	GGYRCC	1 cut(s)	653
AciI	CCGC	5 cut(s)	419, 849, 869, 906, 943
AclWI	GGATC	1 cut(s)	485
AcsI	RAATTY	3 cut(s)	150, 596, 973
AcyI	GRCGYC	1 cut(s)	873
AfaI	GTAC	6 cut(s)	344, 454, 488, 547, 655, 941
AfiI	CCNNNNNNNGG	2 cut(s)	51, 331
AgsI	TTSAA	6 cut(s)	238, 628, 709, 749, 914, 973
AjnI	CCWGG	4 cut(s)	98, 473, 520, 615
AluBI	AGCT	2 cut(s)	583, 790
AluI	AGCT	2 cut(s)	583, 790
Alw21I	GWGCWC	1 cut(s)	742
Alw26I	GTCTC	2 cut(s)	9, 240
AlwI	GGATC	1 cut(s)	485
AoxI	GGCC	1 cut(s)	490
ApeKI	GCWGC	2 cut(s)	56, 632
ApoI	RAATTY	3 cut(s)	150, 596, 973
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
Asp700I	GAANNNNTTC	1 cut(s)	882
Asp718I	GGTACC	1 cut(s)	653
AspS9I	GGNCC	3 cut(s)	163, 421, 491
AsuHPI	GGTGA	3 cut(s)	88, 544, 671
AvaII	GGWCC	2 cut(s)	163, 421
BanI	GGYRCC	1 cut(s)	653
BbsI	GAAGAC	1 cut(s)	716
Bbv12I	GWGCWC	1 cut(s)	742
BbvI	GCAGC	2 cut(s)	43, 619
BccI	CCATC	3 cut(s)	45, 665, 883
BceAI	ACGGC	1 cut(s)	505
BciT130I	CCWGG	4 cut(s)	100, 475, 522, 617
BciVI	GTATCC	2 cut(s)	377, 634
BcoDI	GTCTC	2 cut(s)	9, 240
BfaI	CTAG	1 cut(s)	60
BfuI	GTATCC	2 cut(s)	377, 634
BisI	GCNGC	3 cut(s)	57, 633, 849
BlsI	GCNGC	3 cut(s)	58, 634, 850
BmcAI	AGTACT	1 cut(s)	547
Bme1390I	CCNGG	4 cut(s)	100, 475, 522, 617
Bme18I	GGWCC	2 cut(s)	163, 421
BmgT120I	GGNCC	3 cut(s)	163, 421, 491
BmiI	GGNNCC	2 cut(s)	655, 675
BmrFI	CCNGG	4 cut(s)	100, 475, 522, 617
BmrI	ACTGGG	1 cut(s)	819
BmuI	ACTGGG	1 cut(s)	819
BpiI	GAAGAC	1 cut(s)	716
BpmI	CTGGAG	3 cut(s)	276, 543, 726
Bpu10I	CCTNAGC	1 cut(s)	177
Bsa29I	ATCGAT	1 cut(s)	660
BsaHI	GRCGYC	1 cut(s)	873
BsaJI	CCNNGG	3 cut(s)	573, 636, 924
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 331
Bse1I	ACTGG	3 cut(s)	743, 765, 814
Bse3DI	GCAATG	1 cut(s)	229
BseBI	CCWGG	4 cut(s)	100, 475, 522, 617
BseCI	ATCGAT	1 cut(s)	660
BseDI	CCNNGG	3 cut(s)	573, 636, 924
BseGI	GGATG	3 cut(s)	56, 345, 598
BseLI	CCNNNNNNNGG	2 cut(s)	51, 331
BseMI	GCAATG	1 cut(s)	229
BseNI	ACTGG	3 cut(s)	743, 765, 814
BseXI	GCAGC	2 cut(s)	43, 619
BseYI	CCCAGC	1 cut(s)	733
BsgI	GTGCAG	1 cut(s)	283
BshFI	GGCC	1 cut(s)	492
BshNI	GGYRCC	1 cut(s)	653
BshVI	ATCGAT	1 cut(s)	660
BsiHKAI	GWGCWC	1 cut(s)	742
BslI	CCNNNNNNNGG	2 cut(s)	51, 331
BsmAI	GTCTC	2 cut(s)	9, 240
BsnI	GGCC	1 cut(s)	492
Bsp1286I	GDGCHC	1 cut(s)	742
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	1 cut(s)	477
Bsp19I	CCATGG	2 cut(s)	573, 636
BspACI	CCGC	5 cut(s)	419, 849, 869, 906, 943
BspANI	GGCC	1 cut(s)	492
BspDI	ATCGAT	1 cut(s)	660
BspHI	TCATGA	1 cut(s)	610
BspLI	GGNNCC	2 cut(s)	655, 675
BspPI	GGATC	1 cut(s)	485
BspQI	GCTCTTC	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	653
BsrDI	GCAATG	1 cut(s)	229
BsrGI	TGTACA	1 cut(s)	342
BsrI	ACTGG	3 cut(s)	743, 765, 814
BssECI	CCNNGG	3 cut(s)	573, 636, 924
BssMI	GATC	1 cut(s)	477
BssNI	GRCGYC	1 cut(s)	873
BssT1I	CCWWGG	3 cut(s)	573, 636, 924
Bst2UI	CCWGG	4 cut(s)	100, 475, 522, 617
Bst4CI	ACNGT	4 cut(s)	484, 538, 653, 667
Bst6I	CTCTTC	1 cut(s)	21
BstACI	GRCGYC	1 cut(s)	873
BstAUI	TGTACA	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	177
BstDSI	CCRYGG	2 cut(s)	573, 636
BstF5I	GGATG	3 cut(s)	56, 345, 598
BstKTI	GATC	1 cut(s)	480
BstMAI	GTCTC	2 cut(s)	9, 240
BstMBI	GATC	1 cut(s)	477
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 803
BstNI	CCWGG	4 cut(s)	100, 475, 522, 617
BstSCI	CCNGG	4 cut(s)	98, 473, 520, 615
BstV1I	GCAGC	2 cut(s)	43, 619
BstV2I	GAAGAC	1 cut(s)	716
Bsu15I	ATCGAT	1 cut(s)	660
BsuI	GTATCC	2 cut(s)	377, 634
BsuRI	GGCC	1 cut(s)	492
BsuTUI	ATCGAT	1 cut(s)	660
BtgI	CCRYGG	2 cut(s)	573, 636
BtsCI	GGATG	3 cut(s)	56, 345, 598
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	42, 489
Cac8I	GCNNGC	1 cut(s)	33
CciI	TCATGA	1 cut(s)	610
Cfr13I	GGNCC	3 cut(s)	163, 421, 491
ClaI	ATCGAT	1 cut(s)	660
Csp6I	GTAC	6 cut(s)	343, 453, 487, 546, 654, 940
CviAII	CATG	8 cut(s)	250, 268, 279, 288, 463, 574, 611, 637
CviQI	GTAC	6 cut(s)	343, 453, 487, 546, 654, 940
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	1 cut(s)	479
DpnII	GATC	1 cut(s)	477
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco130I	CCWWGG	3 cut(s)	573, 636, 924
Eco47I	GGWCC	2 cut(s)	163, 421
EcoRI	GAATTC	1 cut(s)	973
EcoRII	CCWGG	4 cut(s)	98, 473, 520, 615
EcoT14I	CCWWGG	3 cut(s)	573, 636, 924
ErhI	CCWWGG	3 cut(s)	573, 636, 924
FaeI	CATG	8 cut(s)	253, 271, 282, 291, 466, 577, 614, 640
FalI	AAGNNNNNCTT	2 cut(s)	929, 961
FatI	CATG	8 cut(s)	249, 267, 278, 287, 462, 573, 610, 636
Fnu4HI	GCNGC	3 cut(s)	57, 633, 849
FokI	GGATG	3 cut(s)	63, 352, 605
Fsp4HI	GCNGC	3 cut(s)	57, 633, 849
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	3 cut(s)	57, 633, 849
GsaI	CCCAGC	1 cut(s)	737
GsuI	CTGGAG	3 cut(s)	276, 543, 726
HaeIII	GGCC	1 cut(s)	492
Hin1I	GRCGYC	1 cut(s)	873
Hin1II	CATG	8 cut(s)	253, 271, 282, 291, 466, 577, 614, 640
HincII	GTYRAC	1 cut(s)	901
HindII	GTYRAC	1 cut(s)	901
HindIII	AAGCTT	1 cut(s)	788
HinfI	GANTC	4 cut(s)	65, 308, 510, 697
HphI	GGTGA	3 cut(s)	88, 544, 671
Hpy166II	GTNNAC	2 cut(s)	487, 901
Hpy188I	TCNGA	5 cut(s)	163, 313, 555, 603, 888
Hpy188III	TCNNGA	4 cut(s)	8, 133, 611, 755
Hpy8I	GTNNAC	2 cut(s)	487, 901
Hpy99I	CGWCG	1 cut(s)	878
HpyAV	CCTTC	3 cut(s)	176, 559, 622
HpyCH4III	ACNGT	4 cut(s)	484, 538, 653, 667
HpyCH4IV	ACGT	2 cut(s)	873, 897
HpyCH4V	TGCA	5 cut(s)	23, 222, 267, 300, 448
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 803
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	2 cut(s)	873, 897
Hsp92I	GRCGYC	1 cut(s)	873
Hsp92II	CATG	8 cut(s)	253, 271, 282, 291, 466, 577, 614, 640
KpnI	GGTACC	1 cut(s)	657
Kzo9I	GATC	1 cut(s)	477
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	4 cut(s)	463, 524, 619, 745
Lsp1109I	GCAGC	2 cut(s)	43, 619
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	2 cut(s)	873, 897
MaeIII	GTNAC	3 cut(s)	226, 290, 532
MalI	GATC	1 cut(s)	479
MboI	GATC	1 cut(s)	477
MboII	GAAGA	3 cut(s)	38, 574, 721
MfeI	CAATTG	1 cut(s)	623
MhlI	GDGCHC	1 cut(s)	742
MluCI	AATT	7 cut(s)	150, 316, 596, 623, 726, 780, 973
MlyI	GAGTC	2 cut(s)	302, 504
MmeI	TCCRAC	2 cut(s)	169, 414
MnlI	CCTC	3 cut(s)	687, 693, 762
MroXI	GAANNNNTTC	1 cut(s)	882
MseI	TTAA	2 cut(s)	777, 936
MslI	CAYNNNNRTG	1 cut(s)	956
MspA1I	CMGCKG	1 cut(s)	869
MspR9I	CCNGG	4 cut(s)	100, 475, 522, 617
MunI	CAATTG	1 cut(s)	623
MvaI	CCWGG	4 cut(s)	100, 475, 522, 617
MwoI	GCNNNNNNNGC	2 cut(s)	41, 803
NcoI	CCATGG	2 cut(s)	573, 636
NdeII	GATC	1 cut(s)	477
NlaIII	CATG	8 cut(s)	253, 271, 282, 291, 466, 577, 614, 640
NlaIV	GGNNCC	2 cut(s)	655, 675
NmuCI	GTSAC	3 cut(s)	226, 290, 532
PagI	TCATGA	1 cut(s)	610
PciSI	GCTCTTC	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	657
PdmI	GAANNNNTTC	1 cut(s)	882
PfeI	GAWTC	2 cut(s)	65, 697
PkrI	GCNGC	3 cut(s)	58, 634, 850
PleI	GAGTC	2 cut(s)	302, 504
PpsI	GAGTC	2 cut(s)	302, 504
Psp6I	CCWGG	4 cut(s)	98, 473, 520, 615
PspFI	CCCAGC	1 cut(s)	733
PspGI	CCWGG	4 cut(s)	98, 473, 520, 615
PspN4I	GGNNCC	2 cut(s)	655, 675
PspPI	GGNCC	3 cut(s)	163, 421, 491
RsaI	GTAC	6 cut(s)	344, 454, 488, 547, 655, 941
RsaNI	GTAC	6 cut(s)	343, 453, 487, 546, 654, 940
RseI	CAYNNNNRTG	1 cut(s)	956
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	777, 936
SatI	GCNGC	3 cut(s)	57, 633, 849
Sau3AI	GATC	1 cut(s)	477
Sau96I	GGNCC	3 cut(s)	163, 421, 491
ScaI	AGTACT	1 cut(s)	547
SchI	GAGTC	2 cut(s)	302, 504
ScrFI	CCNGG	4 cut(s)	100, 475, 522, 617
SduI	GDGCHC	1 cut(s)	742
SetI	ASST	9 cut(s)	168, 216, 454, 534, 585, 754, 792, 876, 900
SinI	GGWCC	2 cut(s)	163, 421
SmiMI	CAYNNNNRTG	1 cut(s)	956
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
Sse9I	AATT	7 cut(s)	150, 316, 596, 623, 726, 780, 973
SsiI	CCGC	5 cut(s)	419, 849, 869, 906, 943
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	4 cut(s)	98, 473, 520, 615
StyI	CCWWGG	3 cut(s)	573, 636, 924
TaaI	ACNGT	4 cut(s)	484, 538, 653, 667
TaiI	ACGT	2 cut(s)	876, 900
TaqI	TCGA	2 cut(s)	660, 876
TaqII	GACCGA	1 cut(s)	378
TasI	AATT	7 cut(s)	150, 316, 596, 623, 726, 780, 973
TatI	WGTACW	2 cut(s)	342, 545
TauI	GCSGC	1 cut(s)	851
TfiI	GAWTC	2 cut(s)	65, 697
Tru1I	TTAA	2 cut(s)	777, 936
Tru9I	TTAA	2 cut(s)	777, 936
TscAI	CASTG	2 cut(s)	42, 489
TseFI	GTSAC	3 cut(s)	226, 290, 532
TseI	GCWGC	2 cut(s)	56, 632
Tsp45I	GTSAC	3 cut(s)	226, 290, 532
TspDTI	ATGAA	4 cut(s)	267, 423, 609, 833
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	2 cut(s)	42, 489
VpaK11BI	GGWCC	2 cut(s)	163, 421
XapI	RAATTY	3 cut(s)	150, 596, 973
XcmI	CCANNNNNNNNNTGG	1 cut(s)	643
XmnI	GAANNNNTTC	1 cut(s)	882
XspI	CTAG	1 cut(s)	60
ZraI	GACGTC	1 cut(s)	874
ZrmI	AGTACT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.