Rorug02G0116900

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002881
Physical Location & Seq
Reverse (-)
9957689 .. 9958336
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0116900.1

Sequence Viewer

Length: 648 bp
ATGGAGAGGCCATCGAAACTGAAAATCAAAATCTTGAAGTTTCTATCTCAAGCTGCAGCGCCTGCAGTCACCTACAAAAGCCCGCCTGCTAGTCCTCGGAATCCTATCGTATCAATCATTCCGAAAGAGGCTAGGAGAAAGCCGAGGAATGGGTCCAGTAGTTTTGCGACAAAAGAACCCACTTCCCCGAAGGTTTCTTGCATGGGTCAAGTCAAAGGCAAGAAGAAGAAAAAGAAGAGTAAATCCAAGCCTAAGCAGGTCGGCCCTCCACCACCACCACCACAAGAGAGCACCAGTCTGGCTCTCTCTGTTCCTAAAGAGAAGACTTTCAAGGTTTCAAATGTCATCCCAAAGGTGCTCATAAACAATAAAGGTAAGACTAAGGATGACGGTTCGGTAGCTACAAGCTCATTATCTAGAACTAGTCGTGTTCCAGAAAGAGTGCCTTCATTGGGTCAGATGAAGAGGTTTGAGAGTGGCCGCGGTGTGTTGTCTGATTTTGATTTAATAAAGGTTGATGATGATGATGACAACATGAAAATTGGGGTAGGTGGAGATGAAGAATATGATGATGAGGATGAGAAGAAAGAAGTAATTATTCTGTGGAAAAGAAGAAGCATGTCTCCTCCTATGCCTCTTCAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

215

Amino Acids

23.66

Weight (kDa)

10.0

Isoelectric Point (pI)

59.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 247
AccII CGCG 1 cut(s) 483
AciI CCGC 3 cut(s) 83, 481, 483
AcoI YGGCCR 1 cut(s) 478
AcuI CTGAAG 1 cut(s) 623
AfiI CCNNNNNNNGG 2 cut(s) 149, 452
AgsI TTSAA 3 cut(s) 37, 331, 339
AhlI ACTAGT 1 cut(s) 422
AluBI AGCT 3 cut(s) 53, 401, 408
AluI AGCT 3 cut(s) 53, 401, 408
Alw21I GWGCWC 2 cut(s) 293, 360
Alw26I GTCTC 1 cut(s) 627
AlwNI CAGNNNCTG 1 cut(s) 62
AoxI GGCC 3 cut(s) 8, 262, 478
ApeKI GCWGC 2 cut(s) 53, 56
Asp700I GAANNNNTTC 1 cut(s) 326
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 2 cut(s) 153, 263
AsuHPI GGTGA 1 cut(s) 61
AvaII GGWCC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 329
Bbv12I GWGCWC 2 cut(s) 293, 360
BbvI GCAGC 2 cut(s) 40, 68
BccI CCATC 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 627
BcuI ACTAGT 1 cut(s) 422
BfaI CTAG 4 cut(s) 90, 132, 417, 423
BfmI CTRYAG 2 cut(s) 54, 63
BfoI RGCGCY 1 cut(s) 62
BfuAI ACCTGC 1 cut(s) 247
BisI GCNGC 3 cut(s) 54, 57, 481
BlsI GCNGC 3 cut(s) 55, 58, 482
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 2 cut(s) 153, 263
BmiI GGNNCC 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 329
Bpu10I CCTNAGC 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 33
BsaJI CCNNGG 3 cut(s) 95, 143, 481
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 452
Bse1I ACTGG 2 cut(s) 156, 294
BseDI CCNNGG 3 cut(s) 95, 143, 481
BseGI GGATG 3 cut(s) 345, 391, 583
BseLI CCNNNNNNNGG 2 cut(s) 149, 452
BseNI ACTGG 2 cut(s) 156, 294
BseRI GAGGAG 1 cut(s) 615
BseXI GCAGC 2 cut(s) 40, 68
Bsh1236I CGCG 1 cut(s) 483
BshFI GGCC 3 cut(s) 10, 264, 480
BsiHKAI GWGCWC 2 cut(s) 293, 360
BslI CCNNNNNNNGG 2 cut(s) 149, 452
BsmAI GTCTC 1 cut(s) 627
BsnI GGCC 3 cut(s) 10, 264, 480
Bsp1286I GDGCHC 2 cut(s) 293, 360
BspACI CCGC 3 cut(s) 83, 481, 483
BspANI GGCC 3 cut(s) 10, 264, 480
BspFNI CGCG 1 cut(s) 483
BspLI GGNNCC 1 cut(s) 154
BspMAI CTGCAG 2 cut(s) 58, 67
BspMI ACCTGC 1 cut(s) 247
BsrI ACTGG 2 cut(s) 156, 294
BssECI CCNNGG 3 cut(s) 95, 143, 481
Bst4CI ACNGT 1 cut(s) 392
Bst6I CTCTTC 3 cut(s) 230, 458, 642
BstAPI GCANNNNNTGC 1 cut(s) 62
BstC8I GCNNGC 3 cut(s) 63, 83, 87
BstDEI CTNAG 2 cut(s) 252, 381
BstDSI CCRYGG 1 cut(s) 481
BstF5I GGATG 3 cut(s) 345, 391, 583
BstFNI CGCG 1 cut(s) 483
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 1 cut(s) 61
BstMAI GTCTC 1 cut(s) 627
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNSI RCATGY 1 cut(s) 622
BstSFI CTRYAG 2 cut(s) 54, 63
BstUI CGCG 1 cut(s) 483
BstV1I GCAGC 2 cut(s) 40, 68
BstV2I GAAGAC 1 cut(s) 329
BsuRI GGCC 3 cut(s) 10, 264, 480
BtgI CCRYGG 1 cut(s) 481
BtsCI GGATG 3 cut(s) 345, 391, 583
BveI ACCTGC 1 cut(s) 247
Cac8I GCNNGC 3 cut(s) 63, 83, 87
CaiI CAGNNNCTG 1 cut(s) 62
CfoI GCGC 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 153, 263
Cfr42I CCGCGG 1 cut(s) 484
CviAII CATG 3 cut(s) 202, 535, 619
DdeI CTNAG 2 cut(s) 252, 381
EaeI YGGCCR 1 cut(s) 478
Eam1104I CTCTTC 3 cut(s) 230, 458, 642
EarI CTCTTC 3 cut(s) 230, 458, 642
Eco47I GGWCC 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 623
FaeI CATG 3 cut(s) 205, 538, 622
FaiI YATR 6 cut(s) 203, 362, 536, 567, 620, 632
FalI AAGNNNNNCTT 2 cut(s) 430, 462
FatI CATG 3 cut(s) 201, 534, 618
FauI CCCGC 1 cut(s) 90
Fnu4HI GCNGC 3 cut(s) 54, 57, 481
FokI GGATG 3 cut(s) 332, 398, 590
Fsp4HI GCNGC 3 cut(s) 54, 57, 481
FspBI CTAG 4 cut(s) 90, 132, 417, 423
GlaI GCGC 1 cut(s) 60
GluI GCNGC 3 cut(s) 54, 57, 481
HaeII RGCGCY 1 cut(s) 62
HaeIII GGCC 3 cut(s) 10, 264, 480
HhaI GCGC 1 cut(s) 61
Hin1II CATG 3 cut(s) 205, 538, 622
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 1 cut(s) 100
HphI GGTGA 1 cut(s) 61
Hpy188I TCNGA 4 cut(s) 99, 123, 459, 496
Hpy188III TCNNGA 3 cut(s) 34, 417, 434
HpyAV CCTTC 2 cut(s) 184, 456
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4V TGCA 3 cut(s) 56, 65, 201
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 2 cut(s) 252, 381
Hsp92II CATG 3 cut(s) 205, 538, 622
HspAI GCGC 1 cut(s) 59
KspI CCGCGG 1 cut(s) 484
LpnPI CCDG 7 cut(s) 75, 99, 169, 242, 284, 307, 447
Lsp1109I GCAGC 2 cut(s) 40, 68
MaeI CTAG 4 cut(s) 90, 132, 417, 423
MaeIII GTNAC 1 cut(s) 67
MboII GAAGA 9 cut(s) 235, 238, 247, 334, 475, 572, 595, 624, 629
MhlI GDGCHC 2 cut(s) 293, 360
MluCI AATT 2 cut(s) 540, 594
MnlI CCTC 8 cut(s) 105, 121, 138, 276, 459, 568, 636, 645
MroXI GAANNNNTTC 1 cut(s) 326
MseI TTAA 1 cut(s) 506
MspA1I CMGCKG 1 cut(s) 483
MvnI CGCG 1 cut(s) 483
MwoI GCNNNNNNNGC 1 cut(s) 62
NlaIII CATG 3 cut(s) 205, 538, 622
NlaIV GGNNCC 1 cut(s) 154
NmeAIII GCCGAG 1 cut(s) 168
NmuCI GTSAC 1 cut(s) 67
NspI RCATGY 1 cut(s) 622
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 1 cut(s) 100
PkrI GCNGC 3 cut(s) 55, 58, 482
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 2 cut(s) 153, 263
PstI CTGCAG 2 cut(s) 58, 67
PstNI CAGNNNCTG 1 cut(s) 62
SacII CCGCGG 1 cut(s) 484
SaqAI TTAA 1 cut(s) 506
SatI GCNGC 3 cut(s) 54, 57, 481
Sau96I GGNCC 2 cut(s) 153, 263
SduI GDGCHC 2 cut(s) 293, 360
SfcI CTRYAG 2 cut(s) 54, 63
Sfr303I CCGCGG 1 cut(s) 484
SgrBI CCGCGG 1 cut(s) 484
SinI GGWCC 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
SpeI ACTAGT 1 cut(s) 422
Sse9I AATT 2 cut(s) 540, 594
SsiI CCGC 3 cut(s) 83, 481, 483
SspMI CTAG 4 cut(s) 90, 132, 417, 423
TaaI ACNGT 1 cut(s) 392
TaqI TCGA 1 cut(s) 14
TasI AATT 2 cut(s) 540, 594
TauI GCSGC 1 cut(s) 483
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 1 cut(s) 506
Tru9I TTAA 1 cut(s) 506
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 2 cut(s) 53, 56
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 4 cut(s) 438, 476, 551, 573
VpaK11BI GGWCC 1 cut(s) 153
XbaI TCTAGA 1 cut(s) 416
XceI RCATGY 1 cut(s) 622
XmnI GAANNNNTTC 1 cut(s) 326
XspI CTAG 4 cut(s) 90, 132, 417, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.