RLG00000017828

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002881
Physical Location & Seq
Forward (+)
21838120 .. 21839242
1123 bp
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UTR
Exon/CDS
Intron
RLM00000017828

Sequence Viewer

Length: 432 bp
ATGAAATTCAAAGTAGGAGACATAGCCGGAGTGGGGTGCATGGTGGTTTCATGTGGTTCTTGCAATAACCGCACACGAGACTTGGAAAGTTACTGCCCCAATATGATATGGACCTATAACAAACACTACCACGACAGATCCAGAACTTTTGGGGGATACTCCGACAAACTAGTAGTCGAGGAGCATTTCGCAGTTCGAATTCCAGATAACTTGTTATTGGAAGGTGTTGCACCTTTGCTATGTGCTGGGATTACAGTGTACAGCCCTATGAAACACTTTGGACTTTTTGAGCATGCAAAGCATAACGTCACGGCTGATGTTGAAGTCATTCCAATGGATTATGTGAACACTGCTCTTGAAAGAGTTAGTAAGGCTGATGTTAACTACCGCTTTGTCATTGATGTTACAAACACCTTGAATTCTCCATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

144

Amino Acids

16.12

Weight (kDa)

6.28

Isoelectric Point (pI)

25.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 70, 388
AclWI GGATC 1 cut(s) 132
AcsI RAATTY 3 cut(s) 5, 198, 418
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 33
AgsI TTSAA 4 cut(s) 10, 323, 359, 418
AhlI ACTAGT 1 cut(s) 169
Alw26I GTCTC 2 cut(s) 12, 72
AlwI GGATC 1 cut(s) 132
ApoI RAATTY 3 cut(s) 5, 198, 418
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
Asp700I GAANNNNTTC 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 111
AsuII TTCGAA 1 cut(s) 196
AvaII GGWCC 1 cut(s) 111
BauI CACGAG 1 cut(s) 75
BceAI ACGGC 1 cut(s) 327
BciVI GTATCC 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 12, 72
BcuI ACTAGT 1 cut(s) 169
BfaI CTAG 1 cut(s) 170
BfuI GTATCC 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 111
Bpu14I TTCGAA 1 cut(s) 196
Bsc4I CCNNNNNNNGG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 194
BseYI CCCAGC 1 cut(s) 245
BsiSI CCGG 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 33
BsmAI GTCTC 2 cut(s) 12, 72
Bsp119I TTCGAA 1 cut(s) 196
Bsp1407I TGTACA 1 cut(s) 258
Bsp143I GATC 1 cut(s) 137
BspACI CCGC 2 cut(s) 70, 388
BspPI GGATC 1 cut(s) 132
BspT104I TTCGAA 1 cut(s) 196
BsrGI TGTACA 1 cut(s) 258
BssMI GATC 1 cut(s) 137
BssSI CACGAG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 256
BstAUI TGTACA 1 cut(s) 258
BstBI TTCGAA 1 cut(s) 196
BstC8I GCNNGC 1 cut(s) 294
BstKTI GATC 1 cut(s) 140
BstMAI GTCTC 2 cut(s) 12, 72
BstMBI GATC 1 cut(s) 137
BstMWI GCNNNNNNNGC 2 cut(s) 69, 298
BstNSI RCATGY 1 cut(s) 296
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
BsuI GTATCC 1 cut(s) 149
BtsI GCAGTG 1 cut(s) 348
BtsIMutI CAGTG 2 cut(s) 261, 348
Cac8I GCNNGC 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 259
CviAII CATG 3 cut(s) 40, 51, 293
CviJI RGCY 4 cut(s) 26, 264, 314, 374
CviKI_1 RGCY 4 cut(s) 26, 264, 314, 374
CviQI GTAC 1 cut(s) 259
DpnI GATC 1 cut(s) 139
DpnII GATC 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 111
EcoRI GAATTC 2 cut(s) 198, 418
FaeI CATG 3 cut(s) 43, 54, 296
FatI CATG 3 cut(s) 39, 50, 292
FspBI CTAG 1 cut(s) 170
GsaI CCCAGC 1 cut(s) 249
HapII CCGG 1 cut(s) 27
Hin1II CATG 3 cut(s) 43, 54, 296
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HpaI GTTAAC 1 cut(s) 382
HpaII CCGG 1 cut(s) 27
Hpy166II GTNNAC 3 cut(s) 259, 346, 382
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 3 cut(s) 141, 203, 356
Hpy8I GTNNAC 3 cut(s) 259, 346, 382
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 4 cut(s) 39, 63, 230, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 298
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 3 cut(s) 43, 54, 296
KspAI GTTAAC 1 cut(s) 382
Kzo9I GATC 1 cut(s) 137
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 4 cut(s) 40, 154, 216, 231
MaeI CTAG 1 cut(s) 170
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 3 cut(s) 89, 307, 403
MalI GATC 1 cut(s) 139
MboI GATC 1 cut(s) 137
MflI RGATCY 1 cut(s) 137
MluCI AATT 3 cut(s) 5, 198, 418
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 1 cut(s) 172
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 2 cut(s) 381, 430
MslI CAYNNNNRTG 1 cut(s) 332
MspI CCGG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 69, 298
NdeII GATC 1 cut(s) 137
NlaIII CATG 3 cut(s) 43, 54, 296
NmuCI GTSAC 1 cut(s) 307
NspI RCATGY 1 cut(s) 296
NspV TTCGAA 1 cut(s) 196
PaeI GCATGC 1 cut(s) 296
PdmI GAANNNNTTC 1 cut(s) 327
PspFI CCCAGC 1 cut(s) 245
PspPI GGNCC 1 cut(s) 111
PsuI RGATCY 1 cut(s) 137
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 332
SaqAI TTAA 2 cut(s) 381, 430
Sau3AI GATC 1 cut(s) 137
Sau96I GGNCC 1 cut(s) 111
SetI ASST 5 cut(s) 116, 226, 235, 309, 416
SfuI TTCGAA 1 cut(s) 196
SinI GGWCC 1 cut(s) 111
SmiMI CAYNNNNRTG 1 cut(s) 332
SpeI ACTAGT 1 cut(s) 169
SphI GCATGC 1 cut(s) 296
Sse9I AATT 3 cut(s) 5, 198, 418
SsiI CCGC 2 cut(s) 70, 388
SspMI CTAG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 256
TaiI ACGT 1 cut(s) 309
TaqI TCGA 2 cut(s) 177, 196
TasI AATT 3 cut(s) 5, 198, 418
TatI WGTACW 1 cut(s) 258
Tru1I TTAA 2 cut(s) 381, 430
Tru9I TTAA 2 cut(s) 381, 430
TscAI CASTG 2 cut(s) 261, 355
TseFI GTSAC 1 cut(s) 307
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 3 cut(s) 17, 39, 284
TspRI CASTG 2 cut(s) 261, 355
VpaK11BI GGWCC 1 cut(s) 111
XapI RAATTY 3 cut(s) 5, 198, 418
XceI RCATGY 1 cut(s) 296
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.