Rw0G019470

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00872
OG0002881
Physical Location & Seq
Forward (+)
17835 .. 18272
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G019470.1

Sequence Viewer

Length: 348 bp
ATGGATGGTATCATCGACACTGTTTCTGCTTCTCACTCTCTCCTCCCATTGATTGGCTTGCTGAAAACTAGTGGAAAACTAGTTTTGGTGGGTGCTCCAGTGGAGCCACCTGAGCTTCCCGTCTTCCCTTTAATTATGGGGAGGAAAGTTATTGCTGGCAGTGCAATTGGGGGAATGAAAGAGACTCAAGAGATGATAGATTTTGCAGCAAAGCACAACATCACAGCAGATGTCGAAGTTATTCCAATGGATTATGTGAACACTGCTCTTGAACGACTTGAGAAGGGCGACAATGTTAAATATCGCTTTGTCATCGATGTTGCCAACACGATAAAATGTGCAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

115

Amino Acids

12.35

Weight (kDa)

5.27

Isoelectric Point (pI)

19.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 2 - 70 5.5e-09 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 1 cut(s) 272
AhlI ACTAGT 2 cut(s) 68, 79
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
Alw21I GWGCWC 1 cut(s) 97
Alw26I GTCTC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 206
Asp700I GAANNNNTTC 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 97
BbvI GCAGC 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 176
BcuI ACTAGT 2 cut(s) 68, 79
BfaI CTAG 3 cut(s) 69, 80, 346
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 105
BpiI GAAGAC 1 cut(s) 115
BpmI CTGGAG 1 cut(s) 81
Bpu10I CCTNAGC 1 cut(s) 111
BpuEI CTTGAG 2 cut(s) 171, 299
Bsa29I ATCGAT 1 cut(s) 315
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 98
BseCI ATCGAT 1 cut(s) 315
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 1 cut(s) 218
BshVI ATCGAT 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 103
BspDI ATCGAT 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 105
BsrI ACTGG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 22
BstC8I GCNNGC 2 cut(s) 59, 157
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 176
BstMWI GCNNNNNNNGC 2 cut(s) 112, 161
BstV1I GCAGC 1 cut(s) 218
BstV2I GAAGAC 1 cut(s) 115
Bsu15I ATCGAT 1 cut(s) 315
BsuTUI ATCGAT 1 cut(s) 315
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 2 cut(s) 166, 261
BtsIMutI CAGTG 4 cut(s) 18, 105, 166, 261
Cac8I GCNNGC 2 cut(s) 59, 157
ClaI ATCGAT 1 cut(s) 315
CviJI RGCY 3 cut(s) 57, 106, 115
CviKI_1 RGCY 3 cut(s) 57, 106, 115
DdeI CTNAG 1 cut(s) 111
FaiI YATR 2 cut(s) 137, 255
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 3 cut(s) 69, 80, 346
GluI GCNGC 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 81
HinfI GANTC 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 259
Hpy188III TCNNGA 2 cut(s) 188, 269
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 3 cut(s) 164, 206, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 161
HpyF3I CTNAG 1 cut(s) 111
LmnI GCTCC 2 cut(s) 100, 103
LpnPI CCDG 3 cut(s) 111, 123, 141
Lsp1109I GCAGC 1 cut(s) 218
MaeI CTAG 3 cut(s) 69, 80, 346
MboII GAAGA 1 cut(s) 115
MfeI CAATTG 1 cut(s) 165
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 2 cut(s) 132, 165
MlyI GAGTC 1 cut(s) 178
MnlI CCTC 2 cut(s) 53, 135
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 2 cut(s) 131, 297
MunI CAATTG 1 cut(s) 165
MwoI GCNNNNNNNGC 2 cut(s) 112, 161
NlaIV GGNNCC 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 240
PflMI CCANNNNNTGG 1 cut(s) 53
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 105
SaqAI TTAA 2 cut(s) 131, 297
SatI GCNGC 1 cut(s) 207
SchI GAGTC 1 cut(s) 178
SduI GDGCHC 1 cut(s) 97
SetI ASST 2 cut(s) 112, 117
SmlI CTYRAG 2 cut(s) 186, 278
SmoI CTYRAG 2 cut(s) 186, 278
SpeI ACTAGT 2 cut(s) 68, 79
Sse9I AATT 2 cut(s) 132, 165
SspMI CTAG 3 cut(s) 69, 80, 346
TaaI ACNGT 1 cut(s) 22
TaqI TCGA 3 cut(s) 15, 234, 315
TasI AATT 2 cut(s) 132, 165
Tru1I TTAA 2 cut(s) 131, 297
Tru9I TTAA 2 cut(s) 131, 297
TscAI CASTG 4 cut(s) 25, 105, 166, 268
TseI GCWGC 1 cut(s) 206
TspDTI ATGAA 1 cut(s) 191
TspRI CASTG 4 cut(s) 25, 105, 166, 268
Van91I CCANNNNNTGG 1 cut(s) 53
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 3 cut(s) 69, 80, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.