Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002881

Physical Location & Seq

Genomic Coordinates Reverse (-)

7516306 .. 7520108

Gene Structure 3803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGTGGGTTCATGCCGCTCATGCGATAACTGCACACAGGACTTTGAAAATTACTGCTCTAAAATTGTATGGACCTACAATGAACACTATGAAGACGGCTCGAGAACCTTTGGTGGATACTCCGACAAACTAGTAGTCGATGAACACTTTGCCGTCCGAATCCCAGATAACTTGTCGTTGCAAGGTACTGCTCCCATGTTCTGTGCCGGGATCACAGTGTACAGCCCAATGAAATATTTTGGACTCATGGAACCTGGTAAACACTTGGGGGTTGTAGGGCTTGGTGGCCTTGGTCATATGGCCGTGAAGTTTGCAAAAGCTGTAGGAGCAAAGGTGACTGTAATAAGTACTTCTCCGAATAAGAAAAAGGAAGCCATGGAACACCTTGGTGTGGATGAATTTCTGATTAGTCATGACCAGGAGCAATTGCTGGCTGACATGGGTTCAATGGACGGTATCATCGATACAGTTTCAGCCCCTCACTCTCTCTCGTCATTGATTGAGTTGTTGAAGACCAATGGAAAACTAATTCTGGTGGGTCTTATCGTACAACCTCCTGAACTTCCAATTTTCCCCTTAATCTTGGGGAGGAAGCTTATTGCTGGTAGTACAATTGGGGGGATAAAAGAGACACAAGAGATGATAGATTTTGCCGCAAAGCATAATATCACAGCGGACGTGGAAGTTATTCCGATGGATTACGTCAACACCGCCCTTGAAAGAGTTTCCAAGGCTGACGTTAAGTACCGCTTTGTCATTGATGTGGCAAACACTTTGAATTCTCCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

264

Amino Acids

28.69

Weight (kDa)

5.47

Isoelectric Point (pI)

26.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002881)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g46010
malus_domestica	MD00G1085800.v1.1 MD01G1041700.v1.1 MD01G1042100.v1.1 MD01G1042300.v1.1 MD15G1309000.v1.1
prunus_persica	Prupe.6G205400_v2.0.a1 Prupe.6G206100_v2.0.a1 Prupe.6G206500_v2.0.a1 Prupe.6G206600_v2.0.a1
pyrus_communis	pycom01g06930 pycom01g06940
rosa_chinensis	RchiOBHm_Chr2g0103721 RchiOBHm_Chr2g0110621 RchiOBHm_Chr2g0110641 RchiOBHm_Chr6g0270271
rosa_laevigata	RLG00000017252 RLG00000017827 RLG00000017828
rosa_multiflora	Rmu_sc0000389.1_g000030 Rmu_sc0000389.1_g000036 Rmu_sc0001852.1_g000004
rosa_roxburghii	Rroxscaffold_2G00133090 Rroxscaffold_2G00139450
rosa_rugosa	Rorug02G0116900 Rorug02G0168100 Rorug02G0168100 Rorug02G0168300 Rorug06G0054100
rosa_samantha	Rh2AG165700 Rh2BG173000 Rh2BG230200 Rh2BG230800 Rh2CG171700 Rh2CG223000
rosa_wichuraiana	Rw0G019470 Rw2G012980 Rw2G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	18
AciI	CCGC	5 cut(s)	16, 654, 674, 711, 748
AclWI	GGATC	1 cut(s)	218
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	2 cut(s)	398, 778
AfaI	GTAC	6 cut(s)	187, 221, 349, 549, 610, 746
AfiI	CCNNNNNNNGG	1 cut(s)	391
AgsI	TTSAA	5 cut(s)	47, 447, 511, 719, 778
AhlI	ACTAGT	1 cut(s)	130
AjiI	CACGTC	1 cut(s)	679
AjnI	CCWGG	2 cut(s)	253, 417
AleI	CACNNNNGTG	1 cut(s)	387
AluBI	AGCT	2 cut(s)	320, 595
AluI	AGCT	2 cut(s)	320, 595
Alw26I	GTCTC	1 cut(s)	623
AlwI	GGATC	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	100
AoxI	GGCC	2 cut(s)	286, 300
ApoI	RAATTY	2 cut(s)	398, 778
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
Asp700I	GAANNNNTTC	1 cut(s)	687
AspS9I	GGNCC	1 cut(s)	72
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	346
AvaI	CYCGRG	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	72
BbsI	GAAGAC	2 cut(s)	99, 518
BccI	CCATC	1 cut(s)	688
BceAI	ACGGC	3 cut(s)	112, 137, 287
BciT130I	CCWGG	2 cut(s)	255, 419
BciVI	GTATCC	1 cut(s)	110
BcnI	CCSGG	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	623
BcuI	ACTAGT	1 cut(s)	130
BfaI	CTAG	1 cut(s)	131
BfmI	CTRYAG	1 cut(s)	321
BfuI	GTATCC	1 cut(s)	110
BisI	GCNGC	2 cut(s)	16, 654
BlsI	GCNGC	2 cut(s)	17, 655
BmcAI	AGTACT	1 cut(s)	349
Bme1390I	CCNGG	3 cut(s)	208, 255, 419
Bme18I	GGWCC	1 cut(s)	72
BmeT110I	CYCGRG	1 cut(s)	100
BmgBI	CACGTC	1 cut(s)	679
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	3 cut(s)	208, 255, 419
BpiI	GAAGAC	2 cut(s)	99, 518
BpuMI	CCSGG	1 cut(s)	208
Bsa29I	ATCGAT	1 cut(s)	462
BsaJI	CCNNGG	4 cut(s)	289, 375, 385, 729
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
BseBI	CCWGG	2 cut(s)	255, 419
BseCI	ATCGAT	1 cut(s)	462
BseDI	CCNNGG	4 cut(s)	289, 375, 385, 729
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	1 cut(s)	391
BsgI	GTGCAG	1 cut(s)	16
BshFI	GGCC	2 cut(s)	288, 302
BshVI	ATCGAT	1 cut(s)	462
BsiHKCI	CYCGRG	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmAI	GTCTC	1 cut(s)	623
BsnI	GGCC	2 cut(s)	288, 302
BsoBI	CYCGRG	1 cut(s)	100
Bsp1407I	TGTACA	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	5 cut(s)	16, 654, 674, 711, 748
BspANI	GGCC	2 cut(s)	288, 302
BspDI	ATCGAT	1 cut(s)	462
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	252
BspPI	GGATC	1 cut(s)	218
BsrBI	CCGCTC	1 cut(s)	18
BsrGI	TGTACA	1 cut(s)	219
BssECI	CCNNGG	4 cut(s)	289, 375, 385, 729
BssMI	GATC	1 cut(s)	210
BssT1I	CCWWGG	4 cut(s)	289, 375, 385, 729
Bst2UI	CCWGG	2 cut(s)	255, 419
Bst4CI	ACNGT	4 cut(s)	217, 340, 455, 469
BstAUI	TGTACA	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	432
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	1 cut(s)	400
BstKTI	GATC	1 cut(s)	213
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 30, 326
BstNI	CCWGG	2 cut(s)	255, 419
BstSCI	CCNGG	3 cut(s)	206, 253, 417
BstSFI	CTRYAG	1 cut(s)	321
BstV2I	GAAGAC	2 cut(s)	99, 518
Bsu15I	ATCGAT	1 cut(s)	462
BsuI	GTATCC	1 cut(s)	110
BsuRI	GGCC	2 cut(s)	288, 302
BsuTUI	ATCGAT	1 cut(s)	462
BtgI	CCRYGG	1 cut(s)	375
BtrI	CACGTC	1 cut(s)	679
BtsCI	GGATG	1 cut(s)	400
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	432
CciI	TCATGA	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	72
ClaI	ATCGAT	1 cut(s)	462
CsiI	ACCWGGT	1 cut(s)	253
Csp6I	GTAC	6 cut(s)	186, 220, 348, 548, 609, 745
CviAII	CATG	7 cut(s)	12, 21, 196, 247, 376, 413, 439
CviQI	GTAC	6 cut(s)	186, 220, 348, 548, 609, 745
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
EaeI	YGGCCR	1 cut(s)	300
Eco130I	CCWWGG	4 cut(s)	289, 375, 385, 729
Eco47I	GGWCC	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	778
EcoRII	CCWGG	2 cut(s)	253, 417
EcoT14I	CCWWGG	4 cut(s)	289, 375, 385, 729
ErhI	CCWWGG	4 cut(s)	289, 375, 385, 729
FaeI	CATG	7 cut(s)	15, 24, 199, 250, 379, 416, 442
FalI	AAGNNNNNCTT	2 cut(s)	734, 766
FatI	CATG	7 cut(s)	11, 20, 195, 246, 375, 412, 438
FauNDI	CATATG	1 cut(s)	297
Fnu4HI	GCNGC	2 cut(s)	16, 654
FokI	GGATG	1 cut(s)	407
Fsp4HI	GCNGC	2 cut(s)	16, 654
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	2 cut(s)	16, 654
HaeIII	GGCC	2 cut(s)	288, 302
HapII	CCGG	1 cut(s)	207
Hin1II	CATG	7 cut(s)	15, 24, 199, 250, 379, 416, 442
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	2 cut(s)	159, 243
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	3 cut(s)	220, 260, 706
Hpy188I	TCNGA	5 cut(s)	124, 158, 357, 405, 693
Hpy188III	TCNNGA	3 cut(s)	102, 413, 557
Hpy8I	GTNNAC	3 cut(s)	220, 260, 706
HpyCH4III	ACNGT	4 cut(s)	217, 340, 455, 469
HpyCH4IV	ACGT	3 cut(s)	678, 702, 738
HpyCH4V	TGCA	3 cut(s)	33, 181, 314
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 30, 326
HpySE526I	ACGT	3 cut(s)	678, 702, 738
Hsp92II	CATG	7 cut(s)	15, 24, 199, 250, 379, 416, 442
Kzo9I	GATC	1 cut(s)	210
LmnI	GCTCC	3 cut(s)	196, 326, 421
MabI	ACCWGGT	1 cut(s)	253
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	3 cut(s)	678, 702, 738
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	1 cut(s)	212
MbiI	CCGCTC	1 cut(s)	18
MboI	GATC	1 cut(s)	210
MboII	GAAGA	2 cut(s)	104, 523
MfeI	CAATTG	2 cut(s)	425, 612
MluCI	AATT	8 cut(s)	49, 63, 398, 425, 528, 567, 612, 778
MlyI	GAGTC	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	3 cut(s)	489, 564, 582
MroXI	GAANNNNTTC	1 cut(s)	687
MseI	TTAA	2 cut(s)	578, 741
MslI	CAYNNNNRTG	2 cut(s)	387, 761
MspA1I	CMGCKG	1 cut(s)	674
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	3 cut(s)	208, 255, 419
MunI	CAATTG	2 cut(s)	425, 612
MvaI	CCWGG	2 cut(s)	255, 419
MwoI	GCNNNNNNNGC	3 cut(s)	21, 30, 326
NciI	CCSGG	1 cut(s)	208
NcoI	CCATGG	1 cut(s)	375
NdeI	CATATG	1 cut(s)	297
NdeII	GATC	1 cut(s)	210
NlaIII	CATG	7 cut(s)	15, 24, 199, 250, 379, 416, 442
NlaIV	GGNNCC	1 cut(s)	252
NmuCI	GTSAC	1 cut(s)	334
OliI	CACNNNNGTG	1 cut(s)	387
PaeR7I	CTCGAG	1 cut(s)	100
PagI	TCATGA	1 cut(s)	412
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PdmI	GAANNNNTTC	1 cut(s)	687
PfeI	GAWTC	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	17, 655
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	253, 417
PspGI	CCWGG	2 cut(s)	253, 417
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	72
RsaI	GTAC	6 cut(s)	187, 221, 349, 549, 610, 746
RsaNI	GTAC	6 cut(s)	186, 220, 348, 548, 609, 745
RseI	CAYNNNNRTG	2 cut(s)	387, 761
SaqAI	TTAA	2 cut(s)	578, 741
SatI	GCNGC	2 cut(s)	16, 654
Sau3AI	GATC	1 cut(s)	210
Sau96I	GGNCC	1 cut(s)	72
ScaI	AGTACT	1 cut(s)	349
SchI	GAGTC	1 cut(s)	237
ScrFI	CCNGG	3 cut(s)	208, 255, 419
SexAI	ACCWGGT	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	321
Sfr274I	CTCGAG	1 cut(s)	100
SinI	GGWCC	1 cut(s)	72
SlaI	CTCGAG	1 cut(s)	100
SmiMI	CAYNNNNRTG	2 cut(s)	387, 761
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
SpeI	ACTAGT	1 cut(s)	130
Sse9I	AATT	8 cut(s)	49, 63, 398, 425, 528, 567, 612, 778
SsiI	CCGC	5 cut(s)	16, 654, 674, 711, 748
SspI	AATATT	1 cut(s)	236
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	3 cut(s)	206, 253, 417
StyI	CCWWGG	4 cut(s)	289, 375, 385, 729
TaaI	ACNGT	4 cut(s)	217, 340, 455, 469
TaiI	ACGT	3 cut(s)	681, 705, 741
TaqI	TCGA	3 cut(s)	101, 138, 462
TasI	AATT	8 cut(s)	49, 63, 398, 425, 528, 567, 612, 778
TatI	WGTACW	3 cut(s)	219, 347, 608
TauI	GCSGC	2 cut(s)	18, 656
TfiI	GAWTC	1 cut(s)	159
Tru1I	TTAA	2 cut(s)	578, 741
Tru9I	TTAA	2 cut(s)	578, 741
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	5 cut(s)	96, 105, 156, 245, 411
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	72
XapI	RAATTY	2 cut(s)	398, 778
XhoI	CTCGAG	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	687
XspI	CTAG	1 cut(s)	131
ZrmI	AGTACT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.