Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002881

Physical Location & Seq

Genomic Coordinates Forward (+)

30997428 .. 30999204

Gene Structure 1777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1309000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTCTCAAGAAATATCAGTTGCAGAAGAGGAAGTAGTGAAAGCCTATGGATGGGCCGCTAGAGATTCCTCGGGAGCCACTGGTAATAATGATATCCGCATCAAGATACTCTATTGTGGCATTTGCCACTCAGACCTTCACCTTGCTAAGGACGAAGTTGGAATGACAATCTATCCCATCGTCCCAGGTCATGAGATTGTAGGCGAAGTGACAAAGGTTGGGTGCAATGTCACAAAATTCAAAGTAGGAGACATAGCTGGAGTTGGGTGCATGGTGGGTTCATGTCGCTCATGCAATAACTGCACGCAGGACTTAGAAAATTACTGCCCCAAAATGGTGTGGACATACAACAAACACCACGAAGACGGATCAAGAACATTTGGTGGATATTCGGACAAACTAGTAGTCGATGAACACTTTGCTGTCCAAATCCCAGATAACTTGTTGTTACAAGGTACTGCACCTATGCTGTGTGCTGGGATCACAGTGTACAGTCCAATGAGATACTTTGGACTTATGGAGCCTGGTAAGCACTTGGGTGTTGTTGGACTTGGTGGCCTTGGCCATCTGGCCGTGAAGTTTGCAAAAGCTGTAGGAGCAAAAGTGACTGTAATCAGTACTTCCCCGAATAAGAAGAAGGAAGCAGTGGAGCAACTTGGTGTTGATGAATTTCTGATTAGTCATGACCAGGAGCAATTGCAGGTTGCCATGGGTACAATGGACGGTATCATCGATACAGTTTCGGCCCCTCACCCTCTCTTGCCATTGACTGAGTTGTTGAAGACCAATGGAAAACTAGTTCTGGTGGGTGCTCCAATCCAACCTCCCGAACTACCAGTTTTCCCGTTAATCTTGGGGAGGAAGCTTATTGCTGGTAGTGCAATTGGGGGAATGAAGGAGACACAAGAGATGATAGATTTTGCAGCAAAGCATAATATCACAGCGGACGTCGAAGTTATTCCGATGGATTACGTCCACACCGCCTTTGAAAGAGTTGCCAAGGCTGATGTTAAGTACCGCTTTGTCATTGATGTGGCAAACACCTTGAATTCTCCGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

354

Amino Acids

38.14

Weight (kDa)

5.74

Isoelectric Point (pI)

28.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	29 - 146	1.4e-23	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	186 - 309	6.6e-22	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002881)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g46010
malus_domestica	MD00G1085800.v1.1 MD01G1041700.v1.1 MD01G1042100.v1.1 MD01G1042300.v1.1 MD15G1309000.v1.1
prunus_persica	Prupe.6G205400_v2.0.a1 Prupe.6G206100_v2.0.a1 Prupe.6G206500_v2.0.a1 Prupe.6G206600_v2.0.a1
pyrus_communis	pycom01g06930 pycom01g06940
rosa_chinensis	RchiOBHm_Chr2g0103721 RchiOBHm_Chr2g0110621 RchiOBHm_Chr2g0110641 RchiOBHm_Chr6g0270271
rosa_laevigata	RLG00000017252 RLG00000017827 RLG00000017828
rosa_multiflora	Rmu_sc0000389.1_g000030 Rmu_sc0000389.1_g000036 Rmu_sc0001852.1_g000004
rosa_roxburghii	Rroxscaffold_2G00133090 Rroxscaffold_2G00139450
rosa_rugosa	Rorug02G0116900 Rorug02G0168100 Rorug02G0168100 Rorug02G0168300 Rorug06G0054100
rosa_samantha	Rh2AG165700 Rh2BG173000 Rh2BG230200 Rh2BG230800 Rh2CG171700 Rh2CG223000
rosa_wichuraiana	Rw0G019470 Rw2G012980 Rw2G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	951
Acc36I	ACCTGC	1 cut(s)	691
AciI	CCGC	5 cut(s)	57, 97, 944, 981, 1018
AclWI	GGATC	2 cut(s)	376, 488
AcoI	YGGCCR	2 cut(s)	562, 570
AcsI	RAATTY	3 cut(s)	236, 668, 1048
AcyI	GRCGYC	1 cut(s)	948
AfaI	GTAC	5 cut(s)	457, 491, 619, 715, 1016
AfiI	CCNNNNNNNGG	3 cut(s)	51, 148, 334
AgsI	TTSAA	4 cut(s)	241, 781, 989, 1048
AhlI	ACTAGT	2 cut(s)	400, 796
AjnI	CCWGG	3 cut(s)	184, 523, 687
AleI	CACNNNNGTG	1 cut(s)	537
AloI	GAACNNNNNNTCC	2 cut(s)	783, 815
AluBI	AGCT	3 cut(s)	257, 590, 865
AluI	AGCT	3 cut(s)	257, 590, 865
Alw21I	GWGCWC	1 cut(s)	814
Alw26I	GTCTC	3 cut(s)	9, 243, 893
AlwI	GGATC	2 cut(s)	376, 488
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	5 cut(s)	54, 556, 562, 570, 744
ApeKI	GCWGC	1 cut(s)	923
ApoI	RAATTY	3 cut(s)	236, 668, 1048
ArsI	GACNNNNNNTTYG	2 cut(s)	390, 422
Asp700I	GAANNNNTTC	1 cut(s)	957
AspS9I	GGNCC	2 cut(s)	54, 745
AsuHPI	GGTGA	2 cut(s)	131, 743
AvaI	CYCGRG	1 cut(s)	70
BalI	TGGCCA	1 cut(s)	564
BbsI	GAAGAC	2 cut(s)	369, 788
Bbv12I	GWGCWC	1 cut(s)	814
BbvI	GCAGC	1 cut(s)	935
BccI	CCATC	4 cut(s)	45, 185, 573, 958
BceAI	ACGGC	1 cut(s)	557
BciT130I	CCWGG	3 cut(s)	186, 525, 689
BcoDI	GTCTC	3 cut(s)	9, 243, 893
BcuI	ACTAGT	2 cut(s)	400, 796
BfaI	CTAG	3 cut(s)	60, 401, 797
BfmI	CTRYAG	1 cut(s)	591
BfuAI	ACCTGC	1 cut(s)	691
BisI	GCNGC	2 cut(s)	57, 924
BlsI	GCNGC	2 cut(s)	58, 925
BmcAI	AGTACT	1 cut(s)	619
Bme1390I	CCNGG	3 cut(s)	186, 525, 689
BmeT110I	CYCGRG	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	54, 745
BmiI	GGNNCC	3 cut(s)	76, 522, 747
BmrFI	CCNGG	3 cut(s)	186, 525, 689
BmsI	GCATC	1 cut(s)	108
BpiI	GAAGAC	2 cut(s)	369, 788
BpmI	CTGGAG	1 cut(s)	279
Bpu10I	CCTNAGC	1 cut(s)	147
Bsa29I	ATCGAT	1 cut(s)	732
BsaHI	GRCGYC	1 cut(s)	948
BsaJI	CCNNGG	5 cut(s)	69, 184, 559, 708, 999
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 148, 334
Bse1I	ACTGG	2 cut(s)	85, 836
Bse3DI	GCAATG	1 cut(s)	232
BseBI	CCWGG	3 cut(s)	186, 525, 689
BseCI	ATCGAT	1 cut(s)	732
BseDI	CCNNGG	5 cut(s)	69, 184, 559, 708, 999
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	3 cut(s)	51, 148, 334
BseMI	GCAATG	1 cut(s)	232
BseMII	CTCAG	2 cut(s)	144, 762
BseNI	ACTGG	2 cut(s)	85, 836
BseXI	GCAGC	1 cut(s)	935
BseYI	CCCAGC	1 cut(s)	476
BsgI	GTGCAG	2 cut(s)	286, 444
BshFI	GGCC	5 cut(s)	56, 558, 564, 572, 746
BshVI	ATCGAT	1 cut(s)	732
BsiHKAI	GWGCWC	1 cut(s)	814
BsiHKCI	CYCGRG	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	3 cut(s)	51, 148, 334
BsmAI	GTCTC	3 cut(s)	9, 243, 893
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	5 cut(s)	56, 558, 564, 572, 746
BsoBI	CYCGRG	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	814
Bsp1407I	TGTACA	1 cut(s)	489
Bsp143I	GATC	2 cut(s)	368, 480
Bsp19I	CCATGG	1 cut(s)	708
BspACI	CCGC	5 cut(s)	57, 97, 944, 981, 1018
BspANI	GGCC	5 cut(s)	56, 558, 564, 572, 746
BspCNI	CTCAG	2 cut(s)	143, 763
BspDI	ATCGAT	1 cut(s)	732
BspHI	TCATGA	2 cut(s)	190, 682
BspLI	GGNNCC	3 cut(s)	76, 522, 747
BspMI	ACCTGC	1 cut(s)	691
BspPI	GGATC	2 cut(s)	376, 488
BsrDI	GCAATG	1 cut(s)	232
BsrGI	TGTACA	1 cut(s)	489
BsrI	ACTGG	2 cut(s)	85, 836
BssECI	CCNNGG	5 cut(s)	69, 184, 559, 708, 999
BssMI	GATC	2 cut(s)	368, 480
BssNI	GRCGYC	1 cut(s)	948
BssT1I	CCWWGG	3 cut(s)	559, 708, 999
Bst2UI	CCWGG	3 cut(s)	186, 525, 689
Bst4CI	ACNGT	5 cut(s)	487, 494, 610, 725, 739
Bst6I	CTCTTC	1 cut(s)	21
BstACI	GRCGYC	1 cut(s)	948
BstAPI	GCANNNNNTGC	1 cut(s)	300
BstAUI	TGTACA	1 cut(s)	489
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	4 cut(s)	130, 147, 313, 771
BstDSI	CCRYGG	1 cut(s)	708
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	56
BstKTI	GATC	2 cut(s)	371, 483
BstMAI	GTCTC	3 cut(s)	9, 243, 893
BstMBI	GATC	2 cut(s)	368, 480
BstMWI	GCNNNNNNNGC	4 cut(s)	300, 529, 596, 878
BstNI	CCWGG	3 cut(s)	186, 525, 689
BstSCI	CCNGG	3 cut(s)	184, 523, 687
BstSFI	CTRYAG	1 cut(s)	591
BstV1I	GCAGC	1 cut(s)	935
BstV2I	GAAGAC	2 cut(s)	369, 788
Bsu15I	ATCGAT	1 cut(s)	732
BsuRI	GGCC	5 cut(s)	56, 558, 564, 572, 746
BsuTUI	ATCGAT	1 cut(s)	732
BtgI	CCRYGG	1 cut(s)	708
BtsCI	GGATG	1 cut(s)	56
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	3 cut(s)	78, 492, 651
BveI	ACCTGC	1 cut(s)	691
Cac8I	GCNNGC	1 cut(s)	305
CciI	TCATGA	2 cut(s)	190, 682
Cfr13I	GGNCC	2 cut(s)	54, 745
ClaI	ATCGAT	1 cut(s)	732
Csp6I	GTAC	5 cut(s)	456, 490, 618, 714, 1015
CviAII	CATG	6 cut(s)	191, 271, 282, 291, 683, 709
CviQI	GTAC	5 cut(s)	456, 490, 618, 714, 1015
DdeI	CTNAG	4 cut(s)	130, 147, 313, 771
DpnI	GATC	2 cut(s)	370, 482
DpnII	GATC	2 cut(s)	368, 480
EaeI	YGGCCR	2 cut(s)	562, 570
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco130I	CCWWGG	3 cut(s)	559, 708, 999
Eco32I	GATATC	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	70
EcoNI	CCTNNNNNAGG	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	1048
EcoRII	CCWGG	3 cut(s)	184, 523, 687
EcoRV	GATATC	1 cut(s)	94
EcoT14I	CCWWGG	3 cut(s)	559, 708, 999
ErhI	CCWWGG	3 cut(s)	559, 708, 999
FaeI	CATG	6 cut(s)	194, 274, 285, 294, 686, 712
FalI	AAGNNNNNCTT	2 cut(s)	1004, 1036
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	6 cut(s)	190, 270, 281, 290, 682, 708
Fnu4HI	GCNGC	2 cut(s)	57, 924
FokI	GGATG	1 cut(s)	63
Fsp4HI	GCNGC	2 cut(s)	57, 924
FspBI	CTAG	3 cut(s)	60, 401, 797
GluI	GCNGC	2 cut(s)	57, 924
GsaI	CCCAGC	1 cut(s)	480
GsuI	CTGGAG	1 cut(s)	279
HaeIII	GGCC	5 cut(s)	56, 558, 564, 572, 746
Hin1I	GRCGYC	1 cut(s)	948
Hin1II	CATG	6 cut(s)	194, 274, 285, 294, 686, 712
HindIII	AAGCTT	1 cut(s)	863
HinfI	GANTC	1 cut(s)	65
HphI	GGTGA	2 cut(s)	131, 743
Hpy166II	GTNNAC	3 cut(s)	342, 490, 976
Hpy188I	TCNGA	4 cut(s)	133, 394, 675, 963
Hpy188III	TCNNGA	7 cut(s)	8, 72, 103, 191, 372, 683, 827
Hpy8I	GTNNAC	3 cut(s)	342, 490, 976
Hpy99I	CGWCG	1 cut(s)	953
HpyAV	CCTTC	3 cut(s)	146, 631, 889
HpyCH4III	ACNGT	5 cut(s)	487, 494, 610, 725, 739
HpyCH4IV	ACGT	2 cut(s)	948, 972
HpyF10VI	GCNNNNNNNGC	4 cut(s)	300, 529, 596, 878
HpyF3I	CTNAG	4 cut(s)	130, 147, 313, 771
HpySE526I	ACGT	2 cut(s)	948, 972
Hsp92I	GRCGYC	1 cut(s)	948
Hsp92II	CATG	6 cut(s)	194, 274, 285, 294, 686, 712
Kzo9I	GATC	2 cut(s)	368, 480
LmnI	GCTCC	6 cut(s)	74, 520, 596, 649, 691, 817
Lsp1109I	GCAGC	1 cut(s)	935
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	3 cut(s)	60, 401, 797
MaeII	ACGT	2 cut(s)	948, 972
MaeIII	GTNAC	4 cut(s)	208, 229, 447, 604
MalI	GATC	2 cut(s)	370, 482
MboI	GATC	2 cut(s)	368, 480
MboII	GAAGA	4 cut(s)	38, 374, 646, 793
MfeI	CAATTG	2 cut(s)	695, 882
MhlI	GDGCHC	1 cut(s)	814
MlsI	TGGCCA	1 cut(s)	564
MluCI	AATT	6 cut(s)	236, 319, 668, 695, 882, 1048
MluNI	TGGCCA	1 cut(s)	564
MmeI	TCCRAC	3 cut(s)	139, 526, 844
MnlI	CCTC	6 cut(s)	22, 79, 759, 765, 834, 852
Mox20I	TGGCCA	1 cut(s)	564
MroXI	GAANNNNTTC	1 cut(s)	957
MscI	TGGCCA	1 cut(s)	564
MseI	TTAA	2 cut(s)	848, 1011
MslI	CAYNNNNRTG	2 cut(s)	537, 1031
Msp20I	TGGCCA	1 cut(s)	564
MspA1I	CMGCKG	1 cut(s)	944
MspR9I	CCNGG	3 cut(s)	186, 525, 689
MunI	CAATTG	2 cut(s)	695, 882
MvaI	CCWGG	3 cut(s)	186, 525, 689
MwoI	GCNNNNNNNGC	4 cut(s)	300, 529, 596, 878
NcoI	CCATGG	1 cut(s)	708
NdeII	GATC	2 cut(s)	368, 480
NlaIII	CATG	6 cut(s)	194, 274, 285, 294, 686, 712
NlaIV	GGNNCC	3 cut(s)	76, 522, 747
NmuCI	GTSAC	3 cut(s)	208, 229, 604
OliI	CACNNNNGTG	1 cut(s)	537
PagI	TCATGA	2 cut(s)	190, 682
PcsI	WCGNNNNNNNCGW	1 cut(s)	729
PdmI	GAANNNNTTC	1 cut(s)	957
PfeI	GAWTC	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	58, 925
Psp6I	CCWGG	3 cut(s)	184, 523, 687
PspFI	CCCAGC	1 cut(s)	476
PspGI	CCWGG	3 cut(s)	184, 523, 687
PspN4I	GGNNCC	3 cut(s)	76, 522, 747
PspPI	GGNCC	2 cut(s)	54, 745
RsaI	GTAC	5 cut(s)	457, 491, 619, 715, 1016
RsaNI	GTAC	5 cut(s)	456, 490, 618, 714, 1015
RseI	CAYNNNNRTG	2 cut(s)	537, 1031
SaqAI	TTAA	2 cut(s)	848, 1011
SatI	GCNGC	2 cut(s)	57, 924
Sau3AI	GATC	2 cut(s)	368, 480
Sau96I	GGNCC	2 cut(s)	54, 745
ScaI	AGTACT	1 cut(s)	619
ScrFI	CCNGG	3 cut(s)	186, 525, 689
SduI	GDGCHC	1 cut(s)	814
SfaNI	GCATC	1 cut(s)	108
SfcI	CTRYAG	1 cut(s)	591
SmiMI	CAYNNNNRTG	2 cut(s)	537, 1031
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
SpeI	ACTAGT	2 cut(s)	400, 796
Sse9I	AATT	6 cut(s)	236, 319, 668, 695, 882, 1048
SsiI	CCGC	5 cut(s)	57, 97, 944, 981, 1018
SspMI	CTAG	3 cut(s)	60, 401, 797
StyD4I	CCNGG	3 cut(s)	184, 523, 687
StyI	CCWWGG	3 cut(s)	559, 708, 999
TaaI	ACNGT	5 cut(s)	487, 494, 610, 725, 739
TaiI	ACGT	2 cut(s)	951, 975
TaqI	TCGA	3 cut(s)	408, 732, 951
TasI	AATT	6 cut(s)	236, 319, 668, 695, 882, 1048
TatI	WGTACW	2 cut(s)	489, 617
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	2 cut(s)	848, 1011
Tru9I	TTAA	2 cut(s)	848, 1011
TscAI	CASTG	3 cut(s)	85, 492, 651
TseFI	GTSAC	3 cut(s)	208, 229, 604
TseI	GCWGC	1 cut(s)	923
Tsp45I	GTSAC	3 cut(s)	208, 229, 604
TspDTI	ATGAA	4 cut(s)	270, 426, 681, 908
TspGWI	ACGGA	2 cut(s)	381, 1044
TspRI	CASTG	3 cut(s)	85, 492, 651
XagI	CCTNNNNNAGG	1 cut(s)	146
XapI	RAATTY	3 cut(s)	236, 668, 1048
XcmI	CCANNNNNNNNNTGG	1 cut(s)	715
XmnI	GAANNNNTTC	1 cut(s)	957
XspI	CTAG	3 cut(s)	60, 401, 797
ZraI	GACGTC	1 cut(s)	949
ZrmI	AGTACT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.