RchiOBHm_Chr6g0270271

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002881
Physical Location & Seq
Reverse (-)
28141320 .. 28142827
1508 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24246

Sequence Viewer

Length: 852 bp
ATGATCAGGTTTCCTAGTCCAACTGGGACTCTGTCATTTTTTCATTCCGAACATCATTTTTCCAAGCTTTTTCCTAGTTGCATTAGGATTCCTACTTCGACTGGGATTCCATTTCCTGATGTAGCCCGAGTAGGGTGCATTATGGGTTCATGTGGCTCATGCGAGAACTGCAAACAAGACTTGGAAAATTATTGCCCCAAAATGTTATGGACCTACAATGGACAATATGAAGATGGAACAAGAGCCTTTGGTGGATATTCAGATAAGTTTGTTGTGGAAGAGCACTTTGTCGTCCGAATCCCAAATGACATTCCATTAGCCGGTGCCGCCCCGCAATTGTGTGCTGGGATTACCGTGTATAGCCCCCTGAAATATTTCGGACTAGTCCCCCAGCCCAGTAGCGATAAACATTTGGGTGTTGTTGGGCTTAGAGGTATAGGTCATATGGCCGTGAAGTTTGCCAAAGCTTTTGGAGCAAGGGTCACTGTGATTAGTTCCTCTCCGAGTAAGGAAAAGGAAGCAGTGGAACGACTTGGTGCAGATTCATTTTTGATCAGTCATGACCATGAGAAATTGGCGGCTGCCTTGGGCACCATGGATGGTATCATCGACACTGTTTCTGCTTCTCGCTCTCTCCTTCCATTGATTGGCTTGCTGAAAACTAGTAGAAAACTAGTTTTGGTGGGTGCTCCAGTGGAACCATCTGAGCTTCCCGTCTTCCCTTTAATTATGGGGAGGAAAGTTATTGCTAGTAGTGCAATTAGGGGAATGAAAGAGACTCAAGAGATAATAGATTTTGCAGCAAACACTACACCAAAAACATTATCAGACAACGGCAAAAAACCGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

283

Amino Acids

30.56

Weight (kDa)

8.62

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 145 - 268 6.9e-19 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 323, 590
AccB7I CCANNNNNTGG 1 cut(s) 647
AciI CCGC 3 cut(s) 327, 332, 578
AcoI YGGCCR 1 cut(s) 447
AfiI CCNNNNNNNGG 3 cut(s) 132, 320, 647
AhlI ACTAGT 3 cut(s) 382, 662, 673
AluBI AGCT 3 cut(s) 67, 467, 709
AluI AGCT 3 cut(s) 67, 467, 709
Alw21I GWGCWC 2 cut(s) 285, 691
Alw26I GTCTC 1 cut(s) 770
Ama87I CYCGRG 1 cut(s) 126
AoxI GGCC 1 cut(s) 447
ApeKI GCWGC 2 cut(s) 581, 800
Asp700I GAANNNNTTC 1 cut(s) 374
AspS9I GGNCC 1 cut(s) 210
AvaI CYCGRG 1 cut(s) 126
AvaII GGWCC 1 cut(s) 210
BaeGI GKGCMC 1 cut(s) 593
BanI GGYRCC 2 cut(s) 323, 590
BbsI GAAGAC 1 cut(s) 709
Bbv12I GWGCWC 2 cut(s) 285, 691
BbvI GCAGC 2 cut(s) 568, 812
BccI CCATC 3 cut(s) 227, 593, 709
BceAI ACGGC 2 cut(s) 434, 850
BcgI CGANNNNNNTGC 2 cut(s) 117, 151
BclI TGATCA 2 cut(s) 3, 552
BcoDI GTCTC 1 cut(s) 770
BcuI ACTAGT 3 cut(s) 382, 662, 673
BfaI CTAG 6 cut(s) 15, 75, 383, 663, 674, 750
BisI GCNGC 4 cut(s) 327, 579, 582, 801
BlsI GCNGC 4 cut(s) 328, 580, 583, 802
Bme18I GGWCC 1 cut(s) 210
BmeT110I CYCGRG 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 3 cut(s) 325, 592, 699
BmrI ACTGGG 3 cut(s) 33, 111, 390
BmuI ACTGGG 3 cut(s) 33, 111, 390
BpiI GAAGAC 1 cut(s) 709
BpmI CTGGAG 1 cut(s) 675
BpuEI CTTGAG 1 cut(s) 765
BsaJI CCNNGG 2 cut(s) 585, 594
BsaXI ACNNNNNCTCC 2 cut(s) 465, 495
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 320, 647
Bse118I RCCGGY 1 cut(s) 320
Bse1I ACTGG 4 cut(s) 28, 106, 396, 692
BseDI CCNNGG 2 cut(s) 585, 594
BseGI GGATG 1 cut(s) 604
BseLI CCNNNNNNNGG 3 cut(s) 132, 320, 647
BseMII CTCAG 1 cut(s) 696
BseNI ACTGG 4 cut(s) 28, 106, 396, 692
BseSI GKGCMC 1 cut(s) 593
BseXI GCAGC 2 cut(s) 568, 812
BseYI CCCAGC 2 cut(s) 344, 390
BsgI GTGCAG 1 cut(s) 558
BshFI GGCC 1 cut(s) 449
BshNI GGYRCC 2 cut(s) 323, 590
BsiHKAI GWGCWC 2 cut(s) 285, 691
BsiHKCI CYCGRG 1 cut(s) 126
BsiSI CCGG 1 cut(s) 321
BslFI GGGAC 2 cut(s) 40, 371
BslI CCNNNNNNNGG 3 cut(s) 132, 320, 647
BsmAI GTCTC 1 cut(s) 770
BsmFI GGGAC 2 cut(s) 40, 371
BsnI GGCC 1 cut(s) 449
BsoBI CYCGRG 1 cut(s) 126
Bsp1286I GDGCHC 3 cut(s) 285, 593, 691
Bsp143I GATC 2 cut(s) 3, 552
Bsp19I CCATGG 1 cut(s) 594
BspACI CCGC 3 cut(s) 327, 332, 578
BspANI GGCC 1 cut(s) 449
BspCNI CTCAG 1 cut(s) 697
BspHI TCATGA 1 cut(s) 559
BspLI GGNNCC 3 cut(s) 325, 592, 699
BspQI GCTCTTC 1 cut(s) 273
BspT107I GGYRCC 2 cut(s) 323, 590
BsrFI RCCGGY 1 cut(s) 320
BsrI ACTGG 4 cut(s) 28, 106, 396, 692
BssAI RCCGGY 1 cut(s) 320
BssECI CCNNGG 2 cut(s) 585, 594
BssMI GATC 2 cut(s) 3, 552
BssT1I CCWWGG 2 cut(s) 585, 594
Bst4CI ACNGT 4 cut(s) 355, 487, 616, 846
Bst6I CTCTTC 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 653
BstDEI CTNAG 2 cut(s) 428, 705
BstDSI CCRYGG 1 cut(s) 594
BstF5I GGATG 1 cut(s) 604
BstKTI GATC 2 cut(s) 6, 555
BstMAI GTCTC 1 cut(s) 770
BstMBI GATC 2 cut(s) 3, 552
BstMWI GCNNNNNNNGC 4 cut(s) 168, 326, 473, 755
BstSLI GKGCMC 1 cut(s) 593
BstV1I GCAGC 2 cut(s) 568, 812
BstV2I GAAGAC 1 cut(s) 709
BsuRI GGCC 1 cut(s) 449
BtgI CCRYGG 1 cut(s) 594
BtsCI GGATG 1 cut(s) 604
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 4 cut(s) 483, 528, 612, 699
Cac8I GCNNGC 1 cut(s) 653
CciI TCATGA 1 cut(s) 559
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 210
CviAII CATG 5 cut(s) 150, 159, 560, 566, 595
DdeI CTNAG 2 cut(s) 428, 705
DpnI GATC 2 cut(s) 5, 554
DpnII GATC 2 cut(s) 3, 552
EaeI YGGCCR 1 cut(s) 447
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco130I CCWWGG 2 cut(s) 585, 594
Eco47I GGWCC 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 126
EcoT14I CCWWGG 2 cut(s) 585, 594
ErhI CCWWGG 2 cut(s) 585, 594
FaeI CATG 5 cut(s) 153, 162, 563, 569, 598
FaqI GGGAC 2 cut(s) 40, 371
FatI CATG 5 cut(s) 149, 158, 559, 565, 594
FauI CCCGC 1 cut(s) 339
FauNDI CATATG 1 cut(s) 444
FbaI TGATCA 2 cut(s) 3, 552
Fnu4HI GCNGC 4 cut(s) 327, 579, 582, 801
FokI GGATG 1 cut(s) 611
Fsp4HI GCNGC 4 cut(s) 327, 579, 582, 801
FspBI CTAG 6 cut(s) 15, 75, 383, 663, 674, 750
GluI GCNGC 4 cut(s) 327, 579, 582, 801
GsaI CCCAGC 2 cut(s) 348, 394
GsuI CTGGAG 1 cut(s) 675
HaeIII GGCC 1 cut(s) 449
HapII CCGG 1 cut(s) 321
Hin1II CATG 5 cut(s) 153, 162, 563, 569, 598
HindIII AAGCTT 2 cut(s) 65, 465
HinfI GANTC 6 cut(s) 28, 88, 106, 297, 542, 778
HpaII CCGG 1 cut(s) 321
Hpy188I TCNGA 7 cut(s) 49, 262, 296, 380, 504, 706, 829
Hpy188III TCNNGA 3 cut(s) 116, 560, 782
HpyAV CCTTC 1 cut(s) 647
HpyCH4III ACNGT 4 cut(s) 355, 487, 616, 846
HpyCH4V TGCA 6 cut(s) 81, 138, 171, 539, 758, 800
HpyF10VI GCNNNNNNNGC 4 cut(s) 168, 326, 473, 755
HpyF3I CTNAG 2 cut(s) 428, 705
Hsp92II CATG 5 cut(s) 153, 162, 563, 569, 598
Ksp22I TGATCA 2 cut(s) 3, 552
Kzo9I GATC 2 cut(s) 3, 552
LguI GCTCTTC 1 cut(s) 273
LmnI GCTCC 2 cut(s) 473, 694
LpnPI CCDG 9 cut(s) 9, 87, 129, 330, 334, 380, 404, 409, 705
Lsp1109I GCAGC 2 cut(s) 568, 812
MaeI CTAG 6 cut(s) 15, 75, 383, 663, 674, 750
MaeIII GTNAC 1 cut(s) 481
MalI GATC 2 cut(s) 5, 554
MboI GATC 2 cut(s) 3, 552
MboII GAAGA 3 cut(s) 242, 290, 709
MfeI CAATTG 1 cut(s) 335
MhlI GDGCHC 3 cut(s) 285, 593, 691
MluCI AATT 5 cut(s) 187, 335, 572, 726, 759
MlyI GAGTC 2 cut(s) 22, 772
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 3 cut(s) 425, 508, 729
MroXI GAANNNNTTC 1 cut(s) 374
MseI TTAA 1 cut(s) 725
MslI CAYNNNNRTG 2 cut(s) 414, 564
MspI CCGG 1 cut(s) 321
MunI CAATTG 1 cut(s) 335
MwoI GCNNNNNNNGC 4 cut(s) 168, 326, 473, 755
NcoI CCATGG 1 cut(s) 594
NdeI CATATG 1 cut(s) 444
NdeII GATC 2 cut(s) 3, 552
NlaIII CATG 5 cut(s) 153, 162, 563, 569, 598
NlaIV GGNNCC 3 cut(s) 325, 592, 699
NmuCI GTSAC 1 cut(s) 481
PagI TCATGA 1 cut(s) 559
PciSI GCTCTTC 1 cut(s) 273
PdmI GAANNNNTTC 1 cut(s) 374
PfeI GAWTC 4 cut(s) 88, 106, 297, 542
PflFI GACNNNGTC 1 cut(s) 31
PflMI CCANNNNNTGG 1 cut(s) 647
PkrI GCNGC 4 cut(s) 328, 580, 583, 802
PleI GAGTC 2 cut(s) 22, 772
PpsI GAGTC 2 cut(s) 22, 772
PspFI CCCAGC 2 cut(s) 344, 390
PspN4I GGNNCC 3 cut(s) 325, 592, 699
PspPI GGNCC 1 cut(s) 210
PsyI GACNNNGTC 1 cut(s) 31
RseI CAYNNNNRTG 2 cut(s) 414, 564
SapI GCTCTTC 1 cut(s) 273
SaqAI TTAA 1 cut(s) 725
SatI GCNGC 4 cut(s) 327, 579, 582, 801
Sau3AI GATC 2 cut(s) 3, 552
Sau96I GGNCC 1 cut(s) 210
SchI GAGTC 2 cut(s) 22, 772
SduI GDGCHC 3 cut(s) 285, 593, 691
SetI ASST 7 cut(s) 11, 69, 215, 436, 442, 469, 711
SinI GGWCC 1 cut(s) 210
SmiMI CAYNNNNRTG 2 cut(s) 414, 564
SmlI CTYRAG 1 cut(s) 780
SmoI CTYRAG 1 cut(s) 780
SpeI ACTAGT 3 cut(s) 382, 662, 673
Sse9I AATT 5 cut(s) 187, 335, 572, 726, 759
SsiI CCGC 3 cut(s) 327, 332, 578
SspI AATATT 1 cut(s) 374
SspMI CTAG 6 cut(s) 15, 75, 383, 663, 674, 750
StyI CCWWGG 2 cut(s) 585, 594
TaaI ACNGT 4 cut(s) 355, 487, 616, 846
TaqI TCGA 2 cut(s) 98, 609
TasI AATT 5 cut(s) 187, 335, 572, 726, 759
TauI GCSGC 2 cut(s) 329, 581
TfiI GAWTC 4 cut(s) 88, 106, 297, 542
Tru1I TTAA 1 cut(s) 725
Tru9I TTAA 1 cut(s) 725
TscAI CASTG 4 cut(s) 490, 528, 619, 699
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 2 cut(s) 581, 800
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 5 cut(s) 32, 138, 243, 534, 785
TspRI CASTG 4 cut(s) 490, 528, 619, 699
Tth111I GACNNNGTC 1 cut(s) 31
Van91I CCANNNNNTGG 1 cut(s) 647
VpaK11BI GGWCC 1 cut(s) 210
XmnI GAANNNNTTC 1 cut(s) 374
XspI CTAG 6 cut(s) 15, 75, 383, 663, 674, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.