Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002881

Physical Location & Seq

Genomic Coordinates Reverse (-)

21439709 .. 21440776

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G206100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGACAAAGGTGGGGCGCAATGTCACAAAATTCAAAGTAGGAGACATAGCCGGAGTTGGGTGCGTGGTGGGTTCATGTCGCTCATGCGACAACTGTACACAGGACCTGGAAAACTACTGCCCCAAAATGGTGTGGACCTACAACAAACACCACGAAGACGGATCAAGAACCTTCGGTGGATACTCCGACAAGACAGTAGTCGATGAGCACTTCGTCGTTCGAATCCCCAAAAACCTTCCACTACAAGGTACTGCCCCAATGCTGTGTGCTGGGATTACAGTTTACAGCCCTATGAGATACTTTGGACTGATGGAGCCTGGTAAGCATTTGGGTGTGGTGGGGCTTGGTGGCCTTGGCCATATGGCCGTGAAGTTTGCCAAAGTTGTTGGAGCAAAAGTTACTGTGATAAGTACCTCCCCCAATAAGAAGAAGGAAGCTGTGGAACAACTTGGTTTTGATGAATTTCTGATTAGTCACGACCAAGAGCAATTACAGGCTGCCATGGGTACAATGGATGGTATCATCGATACAGTTTCAGCCGCTCACCCTCTCTTGCATTTGGTTGGCCTGTTGAAGACCAATGGAAAACTAATTCTGGTTGGTGCTCCAATCCAGCCTCCTGAGCTACCAGTTTTCCCTTTAATCTTGGGGAGGAAGCTTGTTGCTGGCAGTGCAATTGGGGGAATGAAAGAGACCCAAGAGATGATAGACTTTGCAGCAAAGCACAATATCACAGCAGATGTTGAAGTTATTCCAATGGATATTAACACTTATATAATACAACAGAACCCACAGCTAACACGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

270

Amino Acids

29.1

Weight (kDa)

7.66

Isoelectric Point (pI)

29.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002881)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g46010
malus_domestica	MD00G1085800.v1.1 MD01G1041700.v1.1 MD01G1042100.v1.1 MD01G1042300.v1.1 MD15G1309000.v1.1
prunus_persica	Prupe.6G205400_v2.0.a1 Prupe.6G206100_v2.0.a1 Prupe.6G206500_v2.0.a1 Prupe.6G206600_v2.0.a1
pyrus_communis	pycom01g06930 pycom01g06940
rosa_chinensis	RchiOBHm_Chr2g0103721 RchiOBHm_Chr2g0110621 RchiOBHm_Chr2g0110641 RchiOBHm_Chr6g0270271
rosa_laevigata	RLG00000017252 RLG00000017827 RLG00000017828
rosa_multiflora	Rmu_sc0000389.1_g000030 Rmu_sc0000389.1_g000036 Rmu_sc0001852.1_g000004
rosa_roxburghii	Rroxscaffold_2G00133090 Rroxscaffold_2G00139450
rosa_rugosa	Rorug02G0116900 Rorug02G0168100 Rorug02G0168100 Rorug02G0168300 Rorug06G0054100
rosa_samantha	Rh2AG165700 Rh2BG173000 Rh2BG230200 Rh2BG230800 Rh2CG171700 Rh2CG223000
rosa_wichuraiana	Rw0G019470 Rw2G012980 Rw2G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	542
AciI	CCGC	1 cut(s)	540
AclWI	GGATC	1 cut(s)	169
AcoI	YGGCCR	2 cut(s)	355, 363
AcsI	RAATTY	2 cut(s)	29, 461
AfaI	GTAC	4 cut(s)	97, 250, 412, 508
AfiI	CCNNNNNNNGG	3 cut(s)	57, 127, 245
AgsI	TTSAA	3 cut(s)	34, 574, 746
AjnI	CCWGG	2 cut(s)	105, 316
AluBI	AGCT	4 cut(s)	437, 625, 658, 796
AluI	AGCT	4 cut(s)	437, 625, 658, 796
Alw21I	GWGCWC	2 cut(s)	210, 607
Alw26I	GTCTC	2 cut(s)	36, 686
AlwI	GGATC	1 cut(s)	169
AlwNI	CAGNNNCTG	1 cut(s)	106
AoxI	GGCC	4 cut(s)	349, 355, 363, 565
ApeKI	GCWGC	2 cut(s)	497, 716
ApoI	RAATTY	2 cut(s)	29, 461
Asp700I	GAANNNNTTC	1 cut(s)	750
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	2 cut(s)	103, 135
AsuHPI	GGTGA	1 cut(s)	536
AsuII	TTCGAA	1 cut(s)	220
AvaII	GGWCC	2 cut(s)	103, 135
BalI	TGGCCA	1 cut(s)	357
BbsI	GAAGAC	2 cut(s)	162, 581
Bbv12I	GWGCWC	2 cut(s)	210, 607
BbvI	GCAGC	2 cut(s)	484, 728
BccI	CCATC	2 cut(s)	304, 509
BceAI	ACGGC	1 cut(s)	350
BciT130I	CCWGG	2 cut(s)	107, 318
BciVI	GTATCC	1 cut(s)	173
BcoDI	GTCTC	2 cut(s)	36, 686
BfuI	GTATCC	1 cut(s)	173
BisI	GCNGC	3 cut(s)	498, 540, 717
BlsI	GCNGC	3 cut(s)	499, 541, 718
Bme1390I	CCNGG	2 cut(s)	107, 318
Bme18I	GGWCC	2 cut(s)	103, 135
BmgT120I	GGNCC	2 cut(s)	103, 135
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	2 cut(s)	107, 318
BoxI	GACNNNNGTC	1 cut(s)	197
BpiI	GAAGAC	2 cut(s)	162, 581
Bpu10I	CCTNAGC	1 cut(s)	621
Bpu14I	TTCGAA	1 cut(s)	220
Bsa29I	ATCGAT	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	686
BsaJI	CCNNGG	2 cut(s)	352, 501
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 127, 245
Bse1I	ACTGG	1 cut(s)	629
Bse3DI	GCAATG	1 cut(s)	25
BseBI	CCWGG	2 cut(s)	107, 318
BseCI	ATCGAT	1 cut(s)	525
BseDI	CCNNGG	2 cut(s)	352, 501
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	3 cut(s)	57, 127, 245
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	612
BseNI	ACTGG	1 cut(s)	629
BseXI	GCAGC	2 cut(s)	484, 728
BseYI	CCCAGC	1 cut(s)	269
BshFI	GGCC	4 cut(s)	351, 357, 365, 567
BshVI	ATCGAT	1 cut(s)	525
BsiHKAI	GWGCWC	2 cut(s)	210, 607
BsiSI	CCGG	1 cut(s)	51
BslI	CCNNNNNNNGG	3 cut(s)	57, 127, 245
BsmAI	GTCTC	2 cut(s)	36, 686
BsnI	GGCC	4 cut(s)	351, 357, 365, 567
Bso31I	GGTCTC	1 cut(s)	686
Bsp119I	TTCGAA	1 cut(s)	220
Bsp1286I	GDGCHC	2 cut(s)	210, 607
Bsp1407I	TGTACA	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	161
Bsp19I	CCATGG	1 cut(s)	501
BspACI	CCGC	1 cut(s)	540
BspANI	GGCC	4 cut(s)	351, 357, 365, 567
BspCNI	CTCAG	1 cut(s)	613
BspDI	ATCGAT	1 cut(s)	525
BspLI	GGNNCC	1 cut(s)	315
BspPI	GGATC	1 cut(s)	169
BspT104I	TTCGAA	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	686
BsrBI	CCGCTC	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	25
BsrGI	TGTACA	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	629
BssECI	CCNNGG	2 cut(s)	352, 501
BssMI	GATC	1 cut(s)	161
BssT1I	CCWWGG	2 cut(s)	352, 501
Bst2UI	CCWGG	2 cut(s)	107, 318
Bst4CI	ACNGT	5 cut(s)	95, 196, 280, 403, 532
BstAUI	TGTACA	1 cut(s)	95
BstBI	TTCGAA	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	667
BstDEI	CTNAG	1 cut(s)	621
BstDSI	CCRYGG	1 cut(s)	501
BstF5I	GGATG	1 cut(s)	520
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	1 cut(s)	164
BstMAI	GTCTC	2 cut(s)	36, 686
BstMBI	GATC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	3 cut(s)	322, 622, 671
BstNI	CCWGG	2 cut(s)	107, 318
BstPAI	GACNNNNGTC	1 cut(s)	197
BstSCI	CCNGG	2 cut(s)	105, 316
BstV1I	GCAGC	2 cut(s)	484, 728
BstV2I	GAAGAC	2 cut(s)	162, 581
Bsu15I	ATCGAT	1 cut(s)	525
BsuI	GTATCC	1 cut(s)	173
BsuRI	GGCC	4 cut(s)	351, 357, 365, 567
BsuTUI	ATCGAT	1 cut(s)	525
BtgI	CCRYGG	1 cut(s)	501
BtsCI	GGATG	1 cut(s)	520
BtsI	GCAGTG	1 cut(s)	676
BtsIMutI	CAGTG	1 cut(s)	676
Cac8I	GCNNGC	1 cut(s)	667
CaiI	CAGNNNCTG	1 cut(s)	106
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	2 cut(s)	103, 135
ClaI	ATCGAT	1 cut(s)	525
Csp6I	GTAC	4 cut(s)	96, 249, 411, 507
CviAII	CATG	3 cut(s)	75, 84, 502
CviQI	GTAC	4 cut(s)	96, 249, 411, 507
DdeI	CTNAG	1 cut(s)	621
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
EaeI	YGGCCR	2 cut(s)	355, 363
Eco130I	CCWWGG	2 cut(s)	352, 501
Eco31I	GGTCTC	1 cut(s)	686
Eco47I	GGWCC	2 cut(s)	103, 135
EcoO109I	RGGNCCY	1 cut(s)	103
EcoRII	CCWGG	2 cut(s)	105, 316
EcoT14I	CCWWGG	2 cut(s)	352, 501
ErhI	CCWWGG	2 cut(s)	352, 501
FaeI	CATG	3 cut(s)	78, 87, 505
FaiI	YATR	9 cut(s)	47, 76, 85, 293, 360, 362, 503, 774, 776
FatI	CATG	3 cut(s)	74, 83, 501
FauNDI	CATATG	1 cut(s)	360
Fnu4HI	GCNGC	3 cut(s)	498, 540, 717
FokI	GGATG	1 cut(s)	527
Fsp4HI	GCNGC	3 cut(s)	498, 540, 717
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	3 cut(s)	498, 540, 717
GsaI	CCCAGC	1 cut(s)	273
HaeIII	GGCC	4 cut(s)	351, 357, 365, 567
HapII	CCGG	1 cut(s)	51
HhaI	GCGC	1 cut(s)	18
Hin1II	CATG	3 cut(s)	78, 87, 505
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	1 cut(s)	222
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	3 cut(s)	98, 135, 283
Hpy188I	TCNGA	2 cut(s)	187, 468
Hpy188III	TCNNGA	3 cut(s)	165, 476, 620
Hpy8I	GTNNAC	3 cut(s)	98, 135, 283
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	3 cut(s)	181, 245, 424
HpyCH4III	ACNGT	5 cut(s)	95, 196, 280, 403, 532
HpyCH4V	TGCA	3 cut(s)	556, 674, 716
HpyF10VI	GCNNNNNNNGC	3 cut(s)	322, 622, 671
HpyF3I	CTNAG	1 cut(s)	621
Hsp92II	CATG	3 cut(s)	78, 87, 505
HspAI	GCGC	1 cut(s)	16
Kzo9I	GATC	1 cut(s)	161
LmnI	GCTCC	3 cut(s)	313, 389, 610
Lsp1109I	GCAGC	2 cut(s)	484, 728
MaeIII	GTNAC	3 cut(s)	22, 397, 473
MalI	GATC	1 cut(s)	163
MbiI	CCGCTC	1 cut(s)	542
MboI	GATC	1 cut(s)	161
MboII	GAAGA	3 cut(s)	167, 439, 586
MfeI	CAATTG	1 cut(s)	675
MhlI	GDGCHC	2 cut(s)	210, 607
MlsI	TGGCCA	1 cut(s)	357
MluCI	AATT	6 cut(s)	29, 461, 488, 591, 675, 805
MluNI	TGGCCA	1 cut(s)	357
MmeI	TCCRAC	2 cut(s)	210, 367
MnlI	CCTC	4 cut(s)	424, 558, 627, 645
Mox20I	TGGCCA	1 cut(s)	357
MroXI	GAANNNNTTC	1 cut(s)	750
MscI	TGGCCA	1 cut(s)	357
MseI	TTAA	3 cut(s)	641, 765, 808
MslI	CAYNNNNRTG	1 cut(s)	330
Msp20I	TGGCCA	1 cut(s)	357
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	2 cut(s)	107, 318
MunI	CAATTG	1 cut(s)	675
MvaI	CCWGG	2 cut(s)	107, 318
MwoI	GCNNNNNNNGC	3 cut(s)	322, 622, 671
NcoI	CCATGG	1 cut(s)	501
NdeI	CATATG	1 cut(s)	360
NdeII	GATC	1 cut(s)	161
NlaIII	CATG	3 cut(s)	78, 87, 505
NlaIV	GGNNCC	1 cut(s)	315
NmuCI	GTSAC	2 cut(s)	22, 473
NspV	TTCGAA	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	1 cut(s)	222
PkrI	GCNGC	3 cut(s)	499, 541, 718
PpuMI	RGGWCCY	1 cut(s)	103
PshAI	GACNNNNGTC	1 cut(s)	197
Psp5II	RGGWCCY	1 cut(s)	103
Psp6I	CCWGG	2 cut(s)	105, 316
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	2 cut(s)	105, 316
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	2 cut(s)	103, 135
PspPPI	RGGWCCY	1 cut(s)	103
PstNI	CAGNNNCTG	1 cut(s)	106
RsaI	GTAC	4 cut(s)	97, 250, 412, 508
RsaNI	GTAC	4 cut(s)	96, 249, 411, 507
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	3 cut(s)	641, 765, 808
SatI	GCNGC	3 cut(s)	498, 540, 717
Sau3AI	GATC	1 cut(s)	161
Sau96I	GGNCC	2 cut(s)	103, 135
ScrFI	CCNGG	2 cut(s)	107, 318
SduI	GDGCHC	2 cut(s)	210, 607
SfuI	TTCGAA	1 cut(s)	220
SinI	GGWCC	2 cut(s)	103, 135
SmiMI	CAYNNNNRTG	1 cut(s)	330
Sse9I	AATT	6 cut(s)	29, 461, 488, 591, 675, 805
SsiI	CCGC	1 cut(s)	540
StyD4I	CCNGG	2 cut(s)	105, 316
StyI	CCWWGG	2 cut(s)	352, 501
TaaI	ACNGT	5 cut(s)	95, 196, 280, 403, 532
TaqI	TCGA	3 cut(s)	201, 220, 525
TasI	AATT	6 cut(s)	29, 461, 488, 591, 675, 805
TatI	WGTACW	1 cut(s)	95
TauI	GCSGC	1 cut(s)	542
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	3 cut(s)	641, 765, 808
Tru9I	TTAA	3 cut(s)	641, 765, 808
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	2 cut(s)	22, 473
TseI	GCWGC	2 cut(s)	497, 716
Tsp45I	GTSAC	2 cut(s)	22, 473
TspDTI	ATGAA	3 cut(s)	63, 474, 701
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	1 cut(s)	676
VpaK11BI	GGWCC	2 cut(s)	103, 135
XapI	RAATTY	2 cut(s)	29, 461
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XmnI	GAANNNNTTC	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.