Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000389.1

Orthogroup ID

OG0002881

Physical Location & Seq

Genomic Coordinates Forward (+)

158898 .. 161530

Gene Structure 2633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000389.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atgattttgtatagacatgagatcgtcggagaagtgaccgaagtcggaagcaacgtcacgaaattcaaagtaggagacatagccggagtggggtgcatggtggtttcatgtggttcgtgcaataaccgcacacgagacttggaaagttactgccccaatatgatccataacaaacactaccacgacggatccagaacttttgggggatactccgacaaactagtagtcgaggagcatttcgcagttcgaattccagataacttgtcattggaaggtgttgcacctttgctatgtactgggattacggtgtacagccctacgaaacactttggactttttaagcatgattacctcaatctccatcgtcatcgttctgggtctgattgggagggatattgcaaatccggtcagaagggaatcgagttgggttttggggaagaagatgatgggggatgtggaactttgcaagttgcgagttgtgtggcaatcaaacaaaaagaagaagatgatgatggaactgataaagaagaagacgccgagctgaagctgacttccggtacggctcagccgagccggaaagtcggtaagccgaatcttcggcccaaatcggttcggaccggctcagatgtaggaaggaagttaattgctggtagtgcaattgggggaatgaaagagactcaagagatggtagattttgcagcaaagcataacatcacagctgatgttgaagtcattccaatggattatgtgaatactgctcttaaaagagttagtaaggctgatgttaactaccgctttgtcattgatgttacaaacaccttgaattctccatattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

278

Amino Acids

30.45

Weight (kDa)

5.94

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002881)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g46010
malus_domestica	MD00G1085800.v1.1 MD01G1041700.v1.1 MD01G1042100.v1.1 MD01G1042300.v1.1 MD15G1309000.v1.1
prunus_persica	Prupe.6G205400_v2.0.a1 Prupe.6G206100_v2.0.a1 Prupe.6G206500_v2.0.a1 Prupe.6G206600_v2.0.a1
pyrus_communis	pycom01g06930 pycom01g06940
rosa_chinensis	RchiOBHm_Chr2g0103721 RchiOBHm_Chr2g0110621 RchiOBHm_Chr2g0110641 RchiOBHm_Chr6g0270271
rosa_laevigata	RLG00000017252 RLG00000017827 RLG00000017828
rosa_multiflora	Rmu_sc0000389.1_g000030 Rmu_sc0000389.1_g000036 Rmu_sc0001852.1_g000004
rosa_roxburghii	Rroxscaffold_2G00133090 Rroxscaffold_2G00139450
rosa_rugosa	Rorug02G0116900 Rorug02G0168100 Rorug02G0168100 Rorug02G0168300 Rorug06G0054100
rosa_samantha	Rh2AG165700 Rh2BG173000 Rh2BG230200 Rh2BG230800 Rh2CG171700 Rh2CG223000
rosa_wichuraiana	Rw0G019470 Rw2G012980 Rw2G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	127, 793
AclWI	GGATC	3 cut(s)	157, 183, 196
AcsI	RAATTY	3 cut(s)	62, 249, 823
AcuI	CTGAAG	1 cut(s)	563
AcyI	GRCGYC	1 cut(s)	534
AfaI	GTAC	3 cut(s)	295, 311, 559
AfiI	CCNNNNNNNGG	1 cut(s)	90
AgsI	TTSAA	3 cut(s)	67, 728, 823
AhlI	ACTAGT	1 cut(s)	220
AluBI	AGCT	3 cut(s)	541, 547, 719
AluI	AGCT	3 cut(s)	541, 547, 719
Alw26I	GTCTC	3 cut(s)	69, 129, 668
AlwI	GGATC	3 cut(s)	157, 183, 196
AoxI	GGCC	1 cut(s)	599
ApeKI	GCWGC	1 cut(s)	698
ApoI	RAATTY	3 cut(s)	62, 249, 823
ArsI	GACNNNNNNTTYG	2 cut(s)	210, 242
Asp700I	GAANNNNTTC	1 cut(s)	732
AspS9I	GGNCC	2 cut(s)	600, 615
AsuII	TTCGAA	1 cut(s)	247
AvaII	GGWCC	1 cut(s)	615
BamHI	GGATCC	1 cut(s)	188
BauI	CACGAG	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	537
BbvI	GCAGC	1 cut(s)	710
BccI	CCATC	4 cut(s)	369, 440, 506, 679
BceAI	ACGGC	1 cut(s)	576
BciVI	GTATCC	1 cut(s)	200
BcoDI	GTCTC	3 cut(s)	69, 129, 668
BcuI	ACTAGT	1 cut(s)	220
BfaI	CTAG	1 cut(s)	221
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	1 cut(s)	699
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	1 cut(s)	700
Bme18I	GGWCC	1 cut(s)	615
BmgT120I	GGNCC	2 cut(s)	600, 615
BmiI	GGNNCC	1 cut(s)	190
BmrI	ACTGGG	1 cut(s)	306
BmuI	ACTGGG	1 cut(s)	306
BoxI	GACNNNNGTC	1 cut(s)	41
BpiI	GAAGAC	1 cut(s)	537
Bpu1102I	GCTNAGC	1 cut(s)	564
Bpu14I	TTCGAA	1 cut(s)	247
BpuEI	CTTGAG	1 cut(s)	663
BsaHI	GRCGYC	1 cut(s)	534
BsaWI	WCCGGW	2 cut(s)	404, 554
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
Bse118I	RCCGGY	1 cut(s)	617
Bse1I	ACTGG	1 cut(s)	301
BseGI	GGATG	1 cut(s)	458
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseMII	CTCAG	2 cut(s)	578, 636
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	710
BshFI	GGCC	1 cut(s)	601
BsiSI	CCGG	5 cut(s)	84, 405, 555, 574, 618
BslI	CCNNNNNNNGG	1 cut(s)	90
BsmAI	GTCTC	3 cut(s)	69, 129, 668
BsnI	GGCC	1 cut(s)	601
Bsp119I	TTCGAA	1 cut(s)	247
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	3 cut(s)	21, 162, 188
Bsp1720I	GCTNAGC	1 cut(s)	564
BspACI	CCGC	2 cut(s)	127, 793
BspANI	GGCC	1 cut(s)	601
BspCNI	CTCAG	2 cut(s)	577, 635
BspLI	GGNNCC	1 cut(s)	190
BspPI	GGATC	3 cut(s)	157, 183, 196
BspT104I	TTCGAA	1 cut(s)	247
BsrFI	RCCGGY	1 cut(s)	617
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	617
BssMI	GATC	3 cut(s)	21, 162, 188
BssNI	GRCGYC	1 cut(s)	534
BssSI	CACGAG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	307
BstACI	GRCGYC	1 cut(s)	534
BstAUI	TGTACA	1 cut(s)	309
BstBI	TTCGAA	1 cut(s)	247
BstDEI	CTNAG	2 cut(s)	564, 622
BstF5I	GGATG	1 cut(s)	458
BstKTI	GATC	3 cut(s)	24, 165, 191
BstMAI	GTCTC	3 cut(s)	69, 129, 668
BstMBI	GATC	3 cut(s)	21, 162, 188
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 653
BstPAI	GACNNNNGTC	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	710
BstV2I	GAAGAC	1 cut(s)	537
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
BsuI	GTATCC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	601
BtsCI	GGATG	1 cut(s)	458
Cfr10I	RCCGGY	1 cut(s)	617
Cfr13I	GGNCC	2 cut(s)	600, 615
CpoI	CGGWCCG	1 cut(s)	615
CseI	GACGC	1 cut(s)	542
Csp6I	GTAC	3 cut(s)	294, 310, 558
CspI	CGGWCCG	1 cut(s)	615
CviAII	CATG	4 cut(s)	17, 97, 108, 344
CviQI	GTAC	3 cut(s)	294, 310, 558
DdeI	CTNAG	2 cut(s)	564, 622
DpnI	GATC	3 cut(s)	23, 164, 190
DpnII	GATC	3 cut(s)	21, 162, 188
Eco47I	GGWCC	1 cut(s)	615
Eco57I	CTGAAG	1 cut(s)	563
EcoRI	GAATTC	2 cut(s)	249, 823
FaeI	CATG	4 cut(s)	20, 100, 111, 347
FatI	CATG	4 cut(s)	16, 96, 107, 343
Fnu4HI	GCNGC	1 cut(s)	699
FokI	GGATG	1 cut(s)	465
Fsp4HI	GCNGC	1 cut(s)	699
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	1 cut(s)	699
HaeIII	GGCC	1 cut(s)	601
HapII	CCGG	5 cut(s)	84, 405, 555, 574, 618
HgaI	GACGC	1 cut(s)	542
Hin1I	GRCGYC	1 cut(s)	534
Hin1II	CATG	4 cut(s)	20, 100, 111, 347
HincII	GTYRAC	1 cut(s)	787
HindII	GTYRAC	1 cut(s)	787
HinfI	GANTC	3 cut(s)	417, 592, 676
HpaI	GTTAAC	1 cut(s)	787
HpaII	CCGG	5 cut(s)	84, 405, 555, 574, 618
Hpy166II	GTNNAC	2 cut(s)	310, 787
Hpy188I	TCNGA	7 cut(s)	29, 47, 214, 382, 411, 615, 625
Hpy188III	TCNNGA	4 cut(s)	58, 192, 254, 680
Hpy8I	GTNNAC	2 cut(s)	310, 787
Hpy99I	CGWCG	2 cut(s)	29, 188
HpyAV	CCTTC	3 cut(s)	266, 406, 627
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	7 cut(s)	96, 120, 281, 399, 466, 656, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 653
HpyF3I	CTNAG	2 cut(s)	564, 622
HpySE526I	ACGT	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	534
Hsp92II	CATG	4 cut(s)	20, 100, 111, 347
KspAI	GTTAAC	1 cut(s)	787
Kzo9I	GATC	3 cut(s)	21, 162, 188
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	1 cut(s)	710
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	4 cut(s)	34, 55, 146, 808
MalI	GATC	3 cut(s)	23, 164, 190
MboI	GATC	3 cut(s)	21, 162, 188
MboII	GAAGA	7 cut(s)	449, 452, 512, 515, 539, 542, 587
MfeI	CAATTG	1 cut(s)	657
MflI	RGATCY	1 cut(s)	188
MluCI	AATT	5 cut(s)	62, 249, 642, 657, 823
MlyI	GAGTC	1 cut(s)	670
MmeI	TCCRAC	3 cut(s)	7, 25, 237
MnlI	CCTC	3 cut(s)	223, 362, 382
MroXI	GAANNNNTTC	1 cut(s)	732
MseI	TTAA	5 cut(s)	339, 641, 762, 786, 835
MslI	CAYNNNNRTG	1 cut(s)	737
MspA1I	CMGCKG	1 cut(s)	719
MspI	CCGG	5 cut(s)	84, 405, 555, 574, 618
MunI	CAATTG	1 cut(s)	657
MwoI	GCNNNNNNNGC	2 cut(s)	126, 653
NdeII	GATC	3 cut(s)	21, 162, 188
NlaIII	CATG	4 cut(s)	20, 100, 111, 347
NlaIV	GGNNCC	1 cut(s)	190
NmeAIII	GCCGAG	2 cut(s)	562, 594
NmuCI	GTSAC	2 cut(s)	34, 55
NspV	TTCGAA	1 cut(s)	247
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 566
PdmI	GAANNNNTTC	1 cut(s)	732
PfeI	GAWTC	2 cut(s)	417, 592
PkrI	GCNGC	1 cut(s)	700
PleI	GAGTC	1 cut(s)	670
PpsI	GAGTC	1 cut(s)	670
PshAI	GACNNNNGTC	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	2 cut(s)	600, 615
PsuI	RGATCY	1 cut(s)	188
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	3 cut(s)	295, 311, 559
RsaNI	GTAC	3 cut(s)	294, 310, 558
RseI	CAYNNNNRTG	1 cut(s)	737
Rsr2I	CGGWCCG	1 cut(s)	615
RsrII	CGGWCCG	1 cut(s)	615
SaqAI	TTAA	5 cut(s)	339, 641, 762, 786, 835
SatI	GCNGC	1 cut(s)	699
Sau3AI	GATC	3 cut(s)	21, 162, 188
Sau96I	GGNCC	2 cut(s)	600, 615
SchI	GAGTC	1 cut(s)	670
SetI	ASST	8 cut(s)	57, 277, 286, 354, 543, 549, 721, 821
SfuI	TTCGAA	1 cut(s)	247
SinI	GGWCC	1 cut(s)	615
SmiMI	CAYNNNNRTG	1 cut(s)	737
SmlI	CTYRAG	1 cut(s)	678
SmoI	CTYRAG	1 cut(s)	678
SpeI	ACTAGT	1 cut(s)	220
Sse9I	AATT	5 cut(s)	62, 249, 642, 657, 823
SsiI	CCGC	2 cut(s)	127, 793
SspMI	CTAG	1 cut(s)	221
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	3 cut(s)	228, 247, 420
TaqII	GACCGA	1 cut(s)	53
TasI	AATT	5 cut(s)	62, 249, 642, 657, 823
TatI	WGTACW	2 cut(s)	293, 309
TfiI	GAWTC	2 cut(s)	417, 592
Tru1I	TTAA	5 cut(s)	339, 641, 762, 786, 835
Tru9I	TTAA	5 cut(s)	339, 641, 762, 786, 835
TseFI	GTSAC	2 cut(s)	34, 55
TseI	GCWGC	1 cut(s)	698
Tsp45I	GTSAC	2 cut(s)	34, 55
TspDTI	ATGAA	2 cut(s)	96, 683
TspGWI	ACGGA	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	615
XapI	RAATTY	3 cut(s)	62, 249, 823
XmnI	GAANNNNTTC	1 cut(s)	732
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.