Rmu_sc0000389.1_g000030

Dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000389.1
Physical Location & Seq
Forward (+)
134695 .. 137520
2826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000389.1_g000030.1.cds

Sequence Viewer

Length: 1380 bp
atgtctaaagcaccagctcaagaagaagcagtgcatgcttatggatgggctgctagagattcctcaggaattctttccccctaccatttcactagaagggctaacggggataatgatatcaccatcaagatacaatattgcggaatttgccatggagacattcacctcgtaaagaacaaagtatggtcgaccatatatccgactgtgcccgggattgttcatccttcgggtggctgtccagttgatccttgtgtggatctgtttacctttcgtcctgctttggcttttctggcttctactttggcgatggaagatgttctccgtttcggagatgatctgacatttctggcttcttgtgggtctggaatcgggatattccagtgctctcgtttgagttcgttgttgccttttttcaaacttttcgactctggcctgatggtgttcttcatacttggtgcgaattttattcgctttggcgctaccgctgtgacagcgcatgaaattgttggccaagtgaccaaggttgggctcaacgtcaaaaaattcaaagttggagatgtagccggagtagggtgcatgatgggttcatgtggctcatgcgagaactgcaaacaagacttggaaaattactgccccaaaatgttatggaccttcagtggacaatatgaagatggaacaagagcctttggtggatattcagataagtttgttgtggaagagcactttgccgtccgaatcccaaaagacattccactagcaggtgccgccccgctattgtgtgctgggattaccgtgtatagccccctgaaatatttcggactagtcccccagcccggtagcaagaaacatttgggtgttgttgggcttggaggtgtaggtcatatggccgtgaagtttgccaaagctttcggagcaaaggtcactgtgattagttcctctccgagtaaggaaaaggaagcagtggaacgacttggtgcagattcatttttgatcagtcatgaccatgagcaattggaggctgccttgggcaccatggatggtatcatcgacactgtttctgcttctcactctctcctcccattgattggcttgctgaaaactagtggaaaactagttttggtgggtgctccagtggagccacctgtgcttcccgtcttccctttaattatggggaggaaagttattgctggcagtgcaattgggggaatgaaagagactcaagagatgatagattttgcagcaaagcacaacatcacagcagatgtcgaagttattccaatggattatgtgaacactgctcttgaacgacttgagaagggcgacaatgttaaatatcgctttgtcatcgatgttgccaacacgataaaatctgcaaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

459

Amino Acids

49.13

Weight (kDa)

6.67

Isoelectric Point (pI)

29.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 749
Acc36I ACCTGC 1 cut(s) 749
AccB1I GGYRCC 2 cut(s) 761, 1028
AccB7I CCANNNNNTGG 1 cut(s) 1085
AccI GTMKAC 1 cut(s) 188
AciI CCGC 4 cut(s) 141, 483, 765, 770
AclWI GGATC 2 cut(s) 239, 264
AcoI YGGCCR 2 cut(s) 508, 885
AcsI RAATTY 4 cut(s) 69, 144, 460, 542
AcuI CTGAAG 1 cut(s) 637
AfiI CCNNNNNNNGG 6 cut(s) 230, 525, 570, 758, 833, 1085
AgsI TTSAA 3 cut(s) 415, 547, 1304
AhlI ACTAGT 3 cut(s) 820, 1100, 1111
AluBI AGCT 2 cut(s) 17, 905
AluI AGCT 2 cut(s) 17, 905
Alw21I GWGCWC 3 cut(s) 386, 723, 1129
Alw26I GTCTC 2 cut(s) 150, 1208
AlwI GGATC 2 cut(s) 239, 264
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 3 cut(s) 430, 508, 885
ApeKI GCWGC 3 cut(s) 50, 1019, 1238
ApoI RAATTY 4 cut(s) 69, 144, 460, 542
Asp700I GAANNNNTTC 4 cut(s) 73, 315, 812, 1272
AspLEI GCGC 2 cut(s) 479, 496
AspS9I GGNCC 1 cut(s) 648
AsuC2I CCSGG 3 cut(s) 210, 211, 834
AsuHPI GGTGA 2 cut(s) 112, 155
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 1 cut(s) 648
AxyI CCTNAGG 1 cut(s) 64
BaeGI GKGCMC 2 cut(s) 210, 1031
BalI TGGCCA 1 cut(s) 510
BanI GGYRCC 2 cut(s) 761, 1028
BanII GRGCYC 1 cut(s) 531
BbsI GAAGAC 1 cut(s) 1147
Bbv12I GWGCWC 3 cut(s) 386, 723, 1129
BbvI GCAGC 3 cut(s) 37, 1006, 1250
BccI CCATC 7 cut(s) 39, 131, 301, 430, 574, 665, 1031
BceAI ACGGC 2 cut(s) 713, 872
BclI TGATCA 1 cut(s) 990
BcnI CCSGG 3 cut(s) 210, 211, 834
BcoDI GTCTC 2 cut(s) 150, 1208
BcuI ACTAGT 3 cut(s) 820, 1100, 1111
BfaI CTAG 7 cut(s) 54, 93, 755, 821, 1101, 1112, 1378
BfoI RGCGCY 1 cut(s) 480
BfuAI ACCTGC 1 cut(s) 749
BisI GCNGC 4 cut(s) 51, 765, 1020, 1239
BlsI GCNGC 4 cut(s) 52, 766, 1021, 1240
Bme1390I CCNGG 3 cut(s) 210, 211, 834
Bme18I GGWCC 1 cut(s) 648
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 648
BmiI GGNNCC 3 cut(s) 763, 1030, 1137
BmrFI CCNGG 3 cut(s) 210, 211, 834
BpiI GAAGAC 1 cut(s) 1147
BpmI CTGGAG 1 cut(s) 1113
BpuEI CTTGAG 2 cut(s) 1203, 1331
BpuMI CCSGG 3 cut(s) 210, 211, 834
Bsa29I ATCGAT 1 cut(s) 1347
BsaJI CCNNGG 5 cut(s) 151, 209, 519, 1023, 1032
BsaXI ACNNNNNCTCC 2 cut(s) 903, 933
Bsc4I CCNNNNNNNGG 6 cut(s) 230, 525, 570, 758, 833, 1085
Bse1I ACTGG 3 cut(s) 239, 379, 1130
Bse21I CCTNAGG 1 cut(s) 64
BseCI ATCGAT 1 cut(s) 1347
BseDI CCNNGG 5 cut(s) 151, 209, 519, 1023, 1032
BseGI GGATG 3 cut(s) 50, 220, 1042
BseLI CCNNNNNNNGG 6 cut(s) 230, 525, 570, 758, 833, 1085
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 3 cut(s) 239, 379, 1130
BseRI GAGGAG 1 cut(s) 1064
BseSI GKGCMC 2 cut(s) 210, 1031
BseXI GCAGC 3 cut(s) 37, 1006, 1250
BseYI CCCAGC 2 cut(s) 782, 828
BsgI GTGCAG 1 cut(s) 996
BshFI GGCC 3 cut(s) 432, 510, 887
BshNI GGYRCC 2 cut(s) 761, 1028
BshVI ATCGAT 1 cut(s) 1347
BsiHKAI GWGCWC 3 cut(s) 386, 723, 1129
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 3 cut(s) 210, 564, 834
BslFI GGGAC 1 cut(s) 809
BslI CCNNNNNNNGG 6 cut(s) 230, 525, 570, 758, 833, 1085
BsmAI GTCTC 2 cut(s) 150, 1208
BsmFI GGGAC 1 cut(s) 809
BsnI GGCC 3 cut(s) 432, 510, 887
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 6 cut(s) 210, 386, 531, 723, 1031, 1129
Bsp143I GATC 4 cut(s) 244, 256, 334, 990
Bsp19I CCATGG 2 cut(s) 151, 1032
BspACI CCGC 4 cut(s) 141, 483, 765, 770
BspANI GGCC 3 cut(s) 432, 510, 887
BspCNI CTCAG 1 cut(s) 77
BspDI ATCGAT 1 cut(s) 1347
BspHI TCATGA 1 cut(s) 997
BspLI GGNNCC 3 cut(s) 763, 1030, 1137
BspMI ACCTGC 1 cut(s) 749
BspPI GGATC 2 cut(s) 239, 264
BspQI GCTCTTC 1 cut(s) 711
BspT107I GGYRCC 2 cut(s) 761, 1028
BsrI ACTGG 3 cut(s) 239, 379, 1130
BssECI CCNNGG 5 cut(s) 151, 209, 519, 1023, 1032
BssMI GATC 4 cut(s) 244, 256, 334, 990
BssT1I CCWWGG 4 cut(s) 151, 519, 1023, 1032
Bst4CI ACNGT 4 cut(s) 205, 793, 925, 1054
Bst6I CTCTTC 1 cut(s) 711
BstAPI GCANNNNNTGC 1 cut(s) 35
BstC8I GCNNGC 3 cut(s) 36, 1091, 1189
BstDEI CTNAG 1 cut(s) 64
BstDSI CCRYGG 2 cut(s) 151, 1032
BstF5I GGATG 3 cut(s) 50, 220, 1042
BstH2I RGCGCY 1 cut(s) 480
BstHHI GCGC 2 cut(s) 479, 496
BstKTI GATC 4 cut(s) 247, 259, 337, 993
BstMAI GTCTC 2 cut(s) 150, 1208
BstMBI GATC 4 cut(s) 244, 256, 334, 990
BstMWI GCNNNNNNNGC 9 cut(s) 35, 147, 290, 491, 606, 764, 911, 1144, 1193
BstNSI RCATGY 1 cut(s) 38
BstSCI CCNGG 3 cut(s) 208, 209, 832
BstSLI GKGCMC 2 cut(s) 210, 1031
BstV1I GCAGC 3 cut(s) 37, 1006, 1250
BstV2I GAAGAC 1 cut(s) 1147
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
Bsu15I ATCGAT 1 cut(s) 1347
Bsu36I CCTNAGG 1 cut(s) 64
BsuRI GGCC 3 cut(s) 432, 510, 887
BsuTUI ATCGAT 1 cut(s) 1347
BtgI CCRYGG 2 cut(s) 151, 1032
BtgZI GCGATG 1 cut(s) 320
BtsCI GGATG 3 cut(s) 50, 220, 1042
BtsI GCAGTG 4 cut(s) 36, 966, 1198, 1293
BtsIMutI CAGTG 9 cut(s) 36, 386, 661, 921, 966, 1050, 1137, 1198, 1293
BveI ACCTGC 1 cut(s) 749
Cac8I GCNNGC 3 cut(s) 36, 1091, 1189
CciI TCATGA 1 cut(s) 997
CfoI GCGC 2 cut(s) 479, 496
Cfr13I GGNCC 1 cut(s) 648
Cfr9I CCCGGG 1 cut(s) 209
ClaI ATCGAT 1 cut(s) 1347
CviAII CATG 9 cut(s) 35, 152, 497, 577, 588, 597, 998, 1004, 1033
DdeI CTNAG 1 cut(s) 64
DpnI GATC 4 cut(s) 246, 258, 336, 992
DpnII GATC 4 cut(s) 244, 256, 334, 990
EaeI YGGCCR 2 cut(s) 508, 885
Eam1104I CTCTTC 1 cut(s) 711
EarI CTCTTC 1 cut(s) 711
Eco130I CCWWGG 4 cut(s) 151, 519, 1023, 1032
Eco24I GRGCYC 1 cut(s) 531
Eco32I GATATC 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 648
Eco57I CTGAAG 1 cut(s) 637
Eco81I CCTNAGG 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 209
EcoRI GAATTC 1 cut(s) 69
EcoRV GATATC 1 cut(s) 118
EcoT14I CCWWGG 4 cut(s) 151, 519, 1023, 1032
EcoT38I GRGCYC 1 cut(s) 531
ErhI CCWWGG 4 cut(s) 151, 519, 1023, 1032
FaeI CATG 9 cut(s) 38, 155, 500, 580, 591, 600, 1001, 1007, 1036
FaqI GGGAC 1 cut(s) 809
FatI CATG 9 cut(s) 34, 151, 496, 576, 587, 596, 997, 1003, 1032
FauI CCCGC 1 cut(s) 777
FauNDI CATATG 1 cut(s) 882
FbaI TGATCA 1 cut(s) 990
FblI GTMKAC 1 cut(s) 188
Fnu4HI GCNGC 4 cut(s) 51, 765, 1020, 1239
FokI GGATG 3 cut(s) 57, 207, 1049
FriOI GRGCYC 1 cut(s) 531
Fsp4HI GCNGC 4 cut(s) 51, 765, 1020, 1239
FspBI CTAG 7 cut(s) 54, 93, 755, 821, 1101, 1112, 1378
GlaI GCGC 2 cut(s) 478, 495
GluI GCNGC 4 cut(s) 51, 765, 1020, 1239
GsaI CCCAGC 2 cut(s) 786, 832
GsuI CTGGAG 1 cut(s) 1113
HaeII RGCGCY 1 cut(s) 480
HaeIII GGCC 3 cut(s) 432, 510, 887
HapII CCGG 3 cut(s) 210, 564, 834
HhaI GCGC 2 cut(s) 479, 496
Hin1II CATG 9 cut(s) 38, 155, 500, 580, 591, 600, 1001, 1007, 1036
Hin6I GCGC 2 cut(s) 477, 494
HinP1I GCGC 2 cut(s) 477, 494
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HindIII AAGCTT 1 cut(s) 903
HinfI GANTC 6 cut(s) 59, 366, 425, 735, 980, 1216
HpaII CCGG 3 cut(s) 210, 564, 834
HphI GGTGA 2 cut(s) 112, 155
Hpy166II GTNNAC 4 cut(s) 189, 264, 659, 1291
Hpy188I TCNGA 8 cut(s) 201, 329, 339, 700, 734, 818, 911, 942
Hpy188III TCNNGA 8 cut(s) 20, 66, 127, 363, 370, 998, 1220, 1301
Hpy8I GTNNAC 4 cut(s) 189, 264, 659, 1291
HpyAV CCTTC 4 cut(s) 90, 234, 661, 1309
HpyCH4III ACNGT 4 cut(s) 205, 793, 925, 1054
HpyCH4IV ACGT 1 cut(s) 534
HpyCH4V TGCA 7 cut(s) 34, 576, 609, 977, 1196, 1238, 1373
HpyF10VI GCNNNNNNNGC 9 cut(s) 35, 147, 290, 491, 606, 764, 911, 1144, 1193
HpyF3I CTNAG 1 cut(s) 64
HpySE526I ACGT 1 cut(s) 534
Hsp92II CATG 9 cut(s) 38, 155, 500, 580, 591, 600, 1001, 1007, 1036
HspAI GCGC 2 cut(s) 477, 494
Ksp22I TGATCA 1 cut(s) 990
Kzo9I GATC 4 cut(s) 244, 256, 334, 990
LguI GCTCTTC 1 cut(s) 711
LmnI GCTCC 3 cut(s) 911, 1132, 1135
Lsp1109I GCAGC 3 cut(s) 37, 1006, 1250
MaeI CTAG 7 cut(s) 54, 93, 755, 821, 1101, 1112, 1378
MaeII ACGT 1 cut(s) 534
MaeIII GTNAC 3 cut(s) 487, 514, 919
MalI GATC 4 cut(s) 246, 258, 336, 992
MboI GATC 4 cut(s) 244, 256, 334, 990
MboII GAAGA 6 cut(s) 35, 323, 436, 680, 728, 1147
MfeI CAATTG 2 cut(s) 1010, 1197
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 6 cut(s) 210, 386, 531, 723, 1031, 1129
MlsI TGGCCA 1 cut(s) 510
MluCI AATT 9 cut(s) 69, 144, 460, 501, 542, 625, 1010, 1164, 1197
MluNI TGGCCA 1 cut(s) 510
MlyI GAGTC 2 cut(s) 419, 1210
MmeI TCCRAC 2 cut(s) 224, 532
MnlI CCTC 7 cut(s) 73, 176, 863, 946, 1009, 1085, 1167
Mox20I TGGCCA 1 cut(s) 510
MroXI GAANNNNTTC 4 cut(s) 73, 315, 812, 1272
MscI TGGCCA 1 cut(s) 510
MseI TTAA 2 cut(s) 1163, 1329
MslI CAYNNNNRTG 3 cut(s) 39, 852, 1002
Msp20I TGGCCA 1 cut(s) 510
MspA1I CMGCKG 1 cut(s) 485
MspI CCGG 3 cut(s) 210, 564, 834
MspR9I CCNGG 3 cut(s) 210, 211, 834
MunI CAATTG 2 cut(s) 1010, 1197
MwoI GCNNNNNNNGC 9 cut(s) 35, 147, 290, 491, 606, 764, 911, 1144, 1193
NciI CCSGG 3 cut(s) 210, 211, 834
NcoI CCATGG 2 cut(s) 151, 1032
NdeI CATATG 1 cut(s) 882
NdeII GATC 4 cut(s) 244, 256, 334, 990
NlaIII CATG 9 cut(s) 38, 155, 500, 580, 591, 600, 1001, 1007, 1036
NlaIV GGNNCC 3 cut(s) 763, 1030, 1137
NmuCI GTSAC 3 cut(s) 487, 514, 919
NspI RCATGY 1 cut(s) 38
PaeI GCATGC 1 cut(s) 38
PagI TCATGA 1 cut(s) 997
PaqCI CACCTGC 1 cut(s) 749
PciSI GCTCTTC 1 cut(s) 711
PdmI GAANNNNTTC 4 cut(s) 73, 315, 812, 1272
PfeI GAWTC 4 cut(s) 59, 366, 735, 980
PflMI CCANNNNNTGG 1 cut(s) 1085
PkrI GCNGC 4 cut(s) 52, 766, 1021, 1240
PleI GAGTC 2 cut(s) 419, 1210
PpsI GAGTC 2 cut(s) 419, 1210
PspFI CCCAGC 2 cut(s) 782, 828
PspN4I GGNNCC 3 cut(s) 763, 1030, 1137
PspPI GGNCC 1 cut(s) 648
PsuI RGATCY 1 cut(s) 256
RseI CAYNNNNRTG 3 cut(s) 39, 852, 1002
SalI GTCGAC 1 cut(s) 187
SapI GCTCTTC 1 cut(s) 711
SaqAI TTAA 2 cut(s) 1163, 1329
SatI GCNGC 4 cut(s) 51, 765, 1020, 1239
Sau3AI GATC 4 cut(s) 244, 256, 334, 990
Sau96I GGNCC 1 cut(s) 648
SchI GAGTC 2 cut(s) 419, 1210
ScrFI CCNGG 3 cut(s) 210, 211, 834
SduI GDGCHC 6 cut(s) 210, 386, 531, 723, 1031, 1129
SinI GGWCC 1 cut(s) 648
SmaI CCCGGG 1 cut(s) 211
SmiMI CAYNNNNRTG 3 cut(s) 39, 852, 1002
SmlI CTYRAG 3 cut(s) 18, 1218, 1310
SmoI CTYRAG 3 cut(s) 18, 1218, 1310
SpeI ACTAGT 3 cut(s) 820, 1100, 1111
SphI GCATGC 1 cut(s) 38
Sse9I AATT 9 cut(s) 69, 144, 460, 501, 542, 625, 1010, 1164, 1197
SsiI CCGC 4 cut(s) 141, 483, 765, 770
SspI AATATT 2 cut(s) 137, 812
SspMI CTAG 7 cut(s) 54, 93, 755, 821, 1101, 1112, 1378
StyD4I CCNGG 3 cut(s) 208, 209, 832
StyI CCWWGG 4 cut(s) 151, 519, 1023, 1032
TaaI ACNGT 4 cut(s) 205, 793, 925, 1054
TaiI ACGT 1 cut(s) 537
TaqI TCGA 5 cut(s) 188, 423, 1047, 1266, 1347
TasI AATT 9 cut(s) 69, 144, 460, 501, 542, 625, 1010, 1164, 1197
TauI GCSGC 1 cut(s) 767
TfiI GAWTC 4 cut(s) 59, 366, 735, 980
Tru1I TTAA 2 cut(s) 1163, 1329
Tru9I TTAA 2 cut(s) 1163, 1329
TscAI CASTG 9 cut(s) 36, 386, 661, 928, 966, 1057, 1137, 1198, 1300
TseFI GTSAC 3 cut(s) 487, 514, 919
TseI GCWGC 3 cut(s) 50, 1019, 1238
Tsp45I GTSAC 3 cut(s) 487, 514, 919
TspDTI ATGAA 7 cut(s) 209, 436, 513, 576, 681, 972, 1223
TspGWI ACGGA 1 cut(s) 311
TspMI CCCGGG 1 cut(s) 209
TspRI CASTG 9 cut(s) 36, 386, 661, 928, 966, 1057, 1137, 1198, 1300
Van91I CCANNNNNTGG 1 cut(s) 1085
VpaK11BI GGWCC 1 cut(s) 648
XapI RAATTY 4 cut(s) 69, 144, 460, 542
XceI RCATGY 1 cut(s) 38
XmaI CCCGGG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 188
XmnI GAANNNNTTC 4 cut(s) 73, 315, 812, 1272
XspI CTAG 7 cut(s) 54, 93, 755, 821, 1101, 1112, 1378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.