Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002881

Physical Location & Seq

Genomic Coordinates Reverse (-)

21513268 .. 21515204

Gene Structure 1937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G206600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGACTAAAGCAGCATCTGAAGCAAAATCACCTGTCAATGCCTATGGATGGGCTGCTAGAGATTCCTCGGGAGTTCTCTCCCCCTTTCACTTCACTCGGAGAGCTAACAGCGATGATGATATCACCGTAAAGATACTCTACTGTGGAATTTGCCATGGAGACATTCATCTGGTCAAGAACAAAATATGGCCGACCCTCTATCCAACTGTCCCCGGGCATGAGATTGTGGGGCAAGTGACAAGAACTGGGAAAAATGTCACTAAATTTAGAGTTGGGGATATAGCCGGAGTGGGGTGCATAGTAGGTTCATGTGGCTCATGCGATAACTGCAAACAAGACTTGGAAAATTATTGTCCCAAAATGTTATGGACCTTCCAAGGACAGCATGAAGATGGGACAAGAGCCTTTGGTGGGTATTCTGATAACATGGTTGTGGAGGAGCGCTATGCAGTCCTAATCCCAAATGGTTTTGCATTAGCTGGTACTGCCCCATTGTTGTGTGCCGGGATTACCGTGTACAGCCCCCTGAAACATTTTGGCCTCTCGAAGTCCACCACGCACTTGGGTGTGGTCGGGCTTGGCGGCCTAGGTCACATGGCCGTGAAGTTTGCCAAAGCGTTTGGTGTGAAGGTCACGGTGGTAAGTTCTTCTCCAAGCAAGCAGAAGGAAGCAGTGGAAAGGCTTGGTGCTGATTCTTTTTTGGTCAGTCATGATCAGGAGCAACTAGAGGCTGCCATGGGAACTATGGATGGTATCATTGACACCGTTTCATCCCCTCACCCTCTCTTGCCTTTGATTGGTTTGCTCAAGACTAGTGGAAAACTAATTTTGGTGGGTGCTCCAATTCAGCCTCCTGAGCTACCAGTCTTTCCTATAATTATGGGGAGGAAACTTATTGCGGGTAGTGCTATGGGAGGACTAAAAGAGACACAAGAGATGATAGATTTTGCAGCAAAACACAATATCACAGCAGATGTGGAAGTTGTTCCAATGGATTATGTGAACACTGCCCTTGACCGACTTGACAAGGGTGACGTTAAGTATCGTTTTGTCATTGATGTGGCAAAAACCATAAATAATCATGATGAAGCATCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

367

Amino Acids

39.19

Weight (kDa)

6.63

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002881)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g46010
malus_domestica	MD00G1085800.v1.1 MD01G1041700.v1.1 MD01G1042100.v1.1 MD01G1042300.v1.1 MD15G1309000.v1.1
prunus_persica	Prupe.6G205400_v2.0.a1 Prupe.6G206100_v2.0.a1 Prupe.6G206500_v2.0.a1 Prupe.6G206600_v2.0.a1
pyrus_communis	pycom01g06930 pycom01g06940
rosa_chinensis	RchiOBHm_Chr2g0103721 RchiOBHm_Chr2g0110621 RchiOBHm_Chr2g0110641 RchiOBHm_Chr6g0270271
rosa_laevigata	RLG00000017252 RLG00000017827 RLG00000017828
rosa_multiflora	Rmu_sc0000389.1_g000030 Rmu_sc0000389.1_g000036 Rmu_sc0001852.1_g000004
rosa_roxburghii	Rroxscaffold_2G00133090 Rroxscaffold_2G00139450
rosa_rugosa	Rorug02G0116900 Rorug02G0168100 Rorug02G0168100 Rorug02G0168300 Rorug06G0054100
rosa_samantha	Rh2AG165700 Rh2BG173000 Rh2BG230200 Rh2BG230800 Rh2CG171700 Rh2CG223000
rosa_wichuraiana	Rw0G019470 Rw2G012980 Rw2G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	582, 899
AcoI	YGGCCR	2 cut(s)	188, 597
AcsI	RAATTY	2 cut(s)	147, 263
AcuI	CTGAAG	1 cut(s)	39
AfaI	GTAC	2 cut(s)	484, 518
AfeI	AGCGCT	1 cut(s)	443
AfiI	CCNNNNNNNGG	4 cut(s)	48, 291, 411, 797
AhlI	ACTAGT	1 cut(s)	812
AleI	CACNNNNGTG	1 cut(s)	564
AluBI	AGCT	3 cut(s)	104, 479, 859
AluI	AGCT	3 cut(s)	104, 479, 859
Alw21I	GWGCWC	1 cut(s)	841
Alw26I	GTCTC	2 cut(s)	153, 920
AlwNI	CAGNNNCTG	1 cut(s)	17
Ama87I	CYCGRG	2 cut(s)	67, 212
Aor51HI	AGCGCT	1 cut(s)	443
AoxI	GGCC	4 cut(s)	188, 538, 583, 597
ApeKI	GCWGC	4 cut(s)	11, 53, 731, 950
ApoI	RAATTY	2 cut(s)	147, 263
Asp700I	GAANNNNTTC	1 cut(s)	984
AspA2I	CCTAGG	1 cut(s)	586
AspLEI	GCGC	1 cut(s)	444
AspS9I	GGNCC	1 cut(s)	369
AsuC2I	CCSGG	3 cut(s)	213, 214, 505
AsuHPI	GGTGA	4 cut(s)	21, 115, 770, 1043
AvaI	CYCGRG	2 cut(s)	67, 212
AvaII	GGWCC	1 cut(s)	369
AvrII	CCTAGG	1 cut(s)	586
Bbv12I	GWGCWC	1 cut(s)	841
BbvI	GCAGC	4 cut(s)	23, 40, 718, 962
BccI	CCATC	3 cut(s)	42, 386, 743
BceAI	ACGGC	1 cut(s)	584
BclI	TGATCA	1 cut(s)	712
BcnI	CCSGG	3 cut(s)	213, 214, 505
BcoDI	GTCTC	2 cut(s)	153, 920
BcuI	ACTAGT	1 cut(s)	812
BfaI	CTAG	4 cut(s)	57, 587, 725, 813
BfoI	RGCGCY	1 cut(s)	445
BisI	GCNGC	5 cut(s)	12, 54, 583, 732, 951
BlnI	CCTAGG	1 cut(s)	586
BlsI	GCNGC	5 cut(s)	13, 55, 584, 733, 952
Bme1390I	CCNGG	3 cut(s)	213, 214, 505
Bme18I	GGWCC	1 cut(s)	369
BmeT110I	CYCGRG	2 cut(s)	67, 212
BmgT120I	GGNCC	1 cut(s)	369
BmrFI	CCNGG	3 cut(s)	213, 214, 505
BmrI	ACTGGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	23
BmuI	ACTGGG	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	855
BpuEI	CTTGAG	1 cut(s)	791
BpuMI	CCSGG	3 cut(s)	213, 214, 505
BsaJI	CCNNGG	7 cut(s)	66, 154, 211, 212, 376, 586, 735
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 291, 411, 797
Bse1I	ACTGG	2 cut(s)	250, 863
BseDI	CCNNGG	7 cut(s)	66, 154, 211, 212, 376, 586, 735
BseGI	GGATG	3 cut(s)	53, 754, 770
BseLI	CCNNNNNNNGG	4 cut(s)	48, 291, 411, 797
BseMII	CTCAG	1 cut(s)	846
BseNI	ACTGG	2 cut(s)	250, 863
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	4 cut(s)	23, 40, 718, 962
BshFI	GGCC	4 cut(s)	190, 540, 585, 599
BsiHKAI	GWGCWC	1 cut(s)	841
BsiHKCI	CYCGRG	2 cut(s)	67, 212
BsiSI	CCGG	3 cut(s)	213, 285, 504
BslFI	GGGAC	3 cut(s)	194, 339, 409
BslI	CCNNNNNNNGG	4 cut(s)	48, 291, 411, 797
BsmAI	GTCTC	2 cut(s)	153, 920
BsmFI	GGGAC	3 cut(s)	194, 339, 409
BsnI	GGCC	4 cut(s)	190, 540, 585, 599
BsoBI	CYCGRG	2 cut(s)	67, 212
Bsp1286I	GDGCHC	1 cut(s)	841
Bsp1407I	TGTACA	1 cut(s)	516
Bsp143I	GATC	1 cut(s)	712
Bsp19I	CCATGG	2 cut(s)	154, 735
BspACI	CCGC	2 cut(s)	582, 899
BspANI	GGCC	4 cut(s)	190, 540, 585, 599
BspCNI	CTCAG	1 cut(s)	847
BspHI	TCATGA	2 cut(s)	709, 1081
BsrGI	TGTACA	1 cut(s)	516
BsrI	ACTGG	2 cut(s)	250, 863
BssECI	CCNNGG	7 cut(s)	66, 154, 211, 212, 376, 586, 735
BssMI	GATC	1 cut(s)	712
BssT1I	CCWWGG	4 cut(s)	154, 376, 586, 735
Bst4CI	ACNGT	6 cut(s)	127, 143, 208, 514, 637, 766
BstAUI	TGTACA	1 cut(s)	516
BstC8I	GCNNGC	1 cut(s)	659
BstDEI	CTNAG	1 cut(s)	855
BstDSI	CCRYGG	2 cut(s)	154, 735
BstF5I	GGATG	3 cut(s)	53, 754, 770
BstH2I	RGCGCY	1 cut(s)	445
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	1 cut(s)	715
BstMAI	GTCTC	2 cut(s)	153, 920
BstMBI	GATC	1 cut(s)	712
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 327, 485, 856, 905
BstSCI	CCNGG	3 cut(s)	211, 212, 503
BstV1I	GCAGC	4 cut(s)	23, 40, 718, 962
BstXI	CCANNNNNNTGG	1 cut(s)	562
BsuRI	GGCC	4 cut(s)	190, 540, 585, 599
BtgI	CCRYGG	2 cut(s)	154, 735
BtgZI	GCGATG	1 cut(s)	126
BtsCI	GGATG	3 cut(s)	53, 754, 770
BtsI	GCAGTG	2 cut(s)	678, 1005
BtsIMutI	CAGTG	2 cut(s)	678, 1005
Cac8I	GCNNGC	1 cut(s)	659
CaiI	CAGNNNCTG	1 cut(s)	17
CciI	TCATGA	2 cut(s)	709, 1081
CfoI	GCGC	1 cut(s)	444
Cfr13I	GGNCC	1 cut(s)	369
Cfr9I	CCCGGG	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	483, 517
CspCI	CAANNNNNGTGG	2 cut(s)	796, 831
CviQI	GTAC	2 cut(s)	483, 517
DdeI	CTNAG	1 cut(s)	855
DpnI	GATC	1 cut(s)	714
DpnII	GATC	1 cut(s)	712
EaeI	YGGCCR	2 cut(s)	188, 597
Eco130I	CCWWGG	4 cut(s)	154, 376, 586, 735
Eco32I	GATATC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	369
Eco47III	AGCGCT	1 cut(s)	443
Eco57I	CTGAAG	1 cut(s)	39
Eco88I	CYCGRG	2 cut(s)	67, 212
EcoRV	GATATC	1 cut(s)	121
EcoT14I	CCWWGG	4 cut(s)	154, 376, 586, 735
ErhI	CCWWGG	4 cut(s)	154, 376, 586, 735
FaqI	GGGAC	3 cut(s)	194, 339, 409
FauI	CCCGC	1 cut(s)	892
FbaI	TGATCA	1 cut(s)	712
Fnu4HI	GCNGC	5 cut(s)	12, 54, 583, 732, 951
FokI	GGATG	3 cut(s)	60, 757, 761
Fsp4HI	GCNGC	5 cut(s)	12, 54, 583, 732, 951
FspBI	CTAG	4 cut(s)	57, 587, 725, 813
GlaI	GCGC	1 cut(s)	443
GluI	GCNGC	5 cut(s)	12, 54, 583, 732, 951
HaeII	RGCGCY	1 cut(s)	445
HaeIII	GGCC	4 cut(s)	190, 540, 585, 599
HapII	CCGG	3 cut(s)	213, 285, 504
HhaI	GCGC	1 cut(s)	444
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HinfI	GANTC	2 cut(s)	62, 692
HpaII	CCGG	3 cut(s)	213, 285, 504
HphI	GGTGA	4 cut(s)	21, 115, 770, 1043
Hpy166II	GTNNAC	3 cut(s)	517, 552, 1003
Hpy188I	TCNGA	3 cut(s)	19, 99, 421
Hpy188III	TCNNGA	8 cut(s)	69, 175, 544, 710, 716, 808, 854, 1082
Hpy8I	GTNNAC	3 cut(s)	517, 552, 1003
HpyAV	CCTTC	3 cut(s)	382, 622, 658
HpyCH4III	ACNGT	6 cut(s)	127, 143, 208, 514, 637, 766
HpyCH4IV	ACGT	1 cut(s)	1035
HpyCH4V	TGCA	5 cut(s)	297, 330, 449, 473, 950
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 327, 485, 856, 905
HpyF3I	CTNAG	1 cut(s)	855
HpySE526I	ACGT	1 cut(s)	1035
HspAI	GCGC	1 cut(s)	442
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	1 cut(s)	712
LmnI	GCTCC	3 cut(s)	439, 718, 844
Lsp1109I	GCAGC	4 cut(s)	23, 40, 718, 962
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	4 cut(s)	57, 587, 725, 813
MaeII	ACGT	1 cut(s)	1035
MaeIII	GTNAC	5 cut(s)	235, 256, 590, 631, 1031
MalI	GATC	1 cut(s)	714
MboI	GATC	1 cut(s)	712
MboII	GAAGA	2 cut(s)	401, 639
MhlI	GDGCHC	1 cut(s)	841
MluCI	AATT	6 cut(s)	147, 263, 346, 825, 843, 876
MmeI	TCCRAC	1 cut(s)	227
MroXI	GAANNNNTTC	1 cut(s)	984
MseI	TTAA	2 cut(s)	1038, 1099
MslI	CAYNNNNRTG	6 cut(s)	390, 431, 496, 564, 599, 1058
MspI	CCGG	3 cut(s)	213, 285, 504
MspR9I	CCNGG	3 cut(s)	213, 214, 505
MwoI	GCNNNNNNNGC	5 cut(s)	20, 327, 485, 856, 905
NciI	CCSGG	3 cut(s)	213, 214, 505
NcoI	CCATGG	2 cut(s)	154, 735
NdeII	GATC	1 cut(s)	712
NmuCI	GTSAC	5 cut(s)	235, 256, 590, 631, 1031
OliI	CACNNNNGTG	1 cut(s)	564
PagI	TCATGA	2 cut(s)	709, 1081
PdmI	GAANNNNTTC	1 cut(s)	984
PfeI	GAWTC	2 cut(s)	62, 692
PkrI	GCNGC	5 cut(s)	13, 55, 584, 733, 952
PspPI	GGNCC	1 cut(s)	369
PstNI	CAGNNNCTG	1 cut(s)	17
RsaI	GTAC	2 cut(s)	484, 518
RsaNI	GTAC	2 cut(s)	483, 517
RseI	CAYNNNNRTG	6 cut(s)	390, 431, 496, 564, 599, 1058
SaqAI	TTAA	2 cut(s)	1038, 1099
SatI	GCNGC	5 cut(s)	12, 54, 583, 732, 951
Sau3AI	GATC	1 cut(s)	712
Sau96I	GGNCC	1 cut(s)	369
ScrFI	CCNGG	3 cut(s)	213, 214, 505
SduI	GDGCHC	1 cut(s)	841
SetI	ASST	9 cut(s)	34, 106, 307, 374, 481, 592, 633, 861, 1038
SfaNI	GCATC	1 cut(s)	23
SinI	GGWCC	1 cut(s)	369
SmaI	CCCGGG	1 cut(s)	214
SmiMI	CAYNNNNRTG	6 cut(s)	390, 431, 496, 564, 599, 1058
SmlI	CTYRAG	1 cut(s)	806
SmoI	CTYRAG	1 cut(s)	806
SpeI	ACTAGT	1 cut(s)	812
Sse9I	AATT	6 cut(s)	147, 263, 346, 825, 843, 876
SsiI	CCGC	2 cut(s)	582, 899
SspMI	CTAG	4 cut(s)	57, 587, 725, 813
StyD4I	CCNGG	3 cut(s)	211, 212, 503
StyI	CCWWGG	4 cut(s)	154, 376, 586, 735
TaaI	ACNGT	6 cut(s)	127, 143, 208, 514, 637, 766
TaiI	ACGT	1 cut(s)	1038
TaqI	TCGA	1 cut(s)	545
TaqII	GACCGA	1 cut(s)	1032
TasI	AATT	6 cut(s)	147, 263, 346, 825, 843, 876
TatI	WGTACW	1 cut(s)	516
TauI	GCSGC	1 cut(s)	585
TfiI	GAWTC	2 cut(s)	62, 692
Tru1I	TTAA	2 cut(s)	1038, 1099
Tru9I	TTAA	2 cut(s)	1038, 1099
TscAI	CASTG	2 cut(s)	678, 1012
TseFI	GTSAC	5 cut(s)	235, 256, 590, 631, 1031
TseI	GCWGC	4 cut(s)	11, 53, 731, 950
Tsp45I	GTSAC	5 cut(s)	235, 256, 590, 631, 1031
TspDTI	ATGAA	5 cut(s)	155, 297, 402, 759, 1101
TspMI	CCCGGG	1 cut(s)	212
TspRI	CASTG	2 cut(s)	678, 1012
VpaK11BI	GGWCC	1 cut(s)	369
XapI	RAATTY	2 cut(s)	147, 263
XcmI	CCANNNNNNNNNTGG	2 cut(s)	559, 742
XmaI	CCCGGG	1 cut(s)	212
XmaJI	CCTAGG	1 cut(s)	586
XmnI	GAANNNNTTC	1 cut(s)	984
XspI	CTAG	4 cut(s)	57, 587, 725, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.