Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002881

Physical Location & Seq

Genomic Coordinates Reverse (-)

21511013 .. 21512437

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G206500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTCTCAAGAATTAACAGGGGCCGAAGAACAAGCAGTGAAAGCCTATGGATGGGCAGCTAGAGATTCCTCTGGTGTTCTTTCTCCCTTCCACTTCACCAGGAGAGGTAATGGTGATAATGATATCAGCATGAAGATACTCTATTGTGGAATTTGCCACTCAGACCTTCACCTCGCTAAGGACGAAGTGGGAATGACCATATATCCCATTGTCCCAGGACACGAGATTGTAGGAGAAGTGACAAAGGTGGGGCGCAATGTCACAAAATTCAAAGTAGGAGACATAGCCGGAGTTGGGTGCATGGTGGGTTCATGTCGCTCATTCGACAACTGTACACAGGACCTGGAAAACTACTGCCCCAAAATGGTGTGGACCTACAACAAACACCACGAAGACGGATCAAGAACCTTCGGTGGATACTCCGACAAGATAGTAGTCGATGAGCACTTCGTCGTTCAAATCCCCAAAAACCTTCCACTACAAGGTACTGCCCCAATGCTGTGTGCTGGGATCACAGTTTACAGCCCTATGAGATACTTTGGACTGATGGAGCCTGGTAAGCATTTGGGTGTGGTGGGGCTTGGTGGCCTTGGCCATATGGCCGTGAAGTTTGCCAAAGCTGTTGGAGCAAAAGTTACTGTGATAAGTACCTCCCCCAATAAGAAGAAGGAAGCTGTTGGGGAGGAAGCTTGTTGCTGGCAGTGCAATTGGGGGAATGAAAGAGACCCAAGAGATGATAGACTTTGCAGCAAAGCACAATATCACAGCAGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

259

Amino Acids

28.27

Weight (kDa)

7.55

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002881)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g46010
malus_domestica	MD00G1085800.v1.1 MD01G1041700.v1.1 MD01G1042100.v1.1 MD01G1042300.v1.1 MD15G1309000.v1.1
prunus_persica	Prupe.6G205400_v2.0.a1 Prupe.6G206100_v2.0.a1 Prupe.6G206500_v2.0.a1 Prupe.6G206600_v2.0.a1
pyrus_communis	pycom01g06930 pycom01g06940
rosa_chinensis	RchiOBHm_Chr2g0103721 RchiOBHm_Chr2g0110621 RchiOBHm_Chr2g0110641 RchiOBHm_Chr6g0270271
rosa_laevigata	RLG00000017252 RLG00000017827 RLG00000017828
rosa_multiflora	Rmu_sc0000389.1_g000030 Rmu_sc0000389.1_g000036 Rmu_sc0001852.1_g000004
rosa_roxburghii	Rroxscaffold_2G00133090 Rroxscaffold_2G00139450
rosa_rugosa	Rorug02G0116900 Rorug02G0168100 Rorug02G0168100 Rorug02G0168300 Rorug06G0054100
rosa_samantha	Rh2AG165700 Rh2BG173000 Rh2BG230200 Rh2BG230800 Rh2CG171700 Rh2CG223000
rosa_wichuraiana	Rw0G019470 Rw2G012980 Rw2G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	406, 518
AcoI	YGGCCR	2 cut(s)	592, 600
AcsI	RAATTY	2 cut(s)	150, 266
AfaI	GTAC	3 cut(s)	334, 487, 649
AfiI	CCNNNNNNNGG	5 cut(s)	51, 178, 294, 364, 482
AgsI	TTSAA	2 cut(s)	271, 458
AjnI	CCWGG	4 cut(s)	98, 214, 342, 553
AluBI	AGCT	4 cut(s)	59, 620, 674, 689
AluI	AGCT	4 cut(s)	59, 620, 674, 689
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	3 cut(s)	9, 273, 717
AlwI	GGATC	2 cut(s)	406, 518
AlwNI	CAGNNNCTG	1 cut(s)	343
AoxI	GGCC	4 cut(s)	21, 586, 592, 600
ApeKI	GCWGC	2 cut(s)	56, 747
ApoI	RAATTY	2 cut(s)	150, 266
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	3 cut(s)	21, 340, 372
AsuHPI	GGTGA	3 cut(s)	88, 125, 161
AvaII	GGWCC	2 cut(s)	340, 372
BalI	TGGCCA	1 cut(s)	594
BauI	CACGAG	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	399
Bbv12I	GWGCWC	1 cut(s)	447
BbvI	GCAGC	2 cut(s)	68, 759
BccI	CCATC	2 cut(s)	45, 541
BceAI	ACGGC	1 cut(s)	587
BciT130I	CCWGG	4 cut(s)	100, 216, 344, 555
BciVI	GTATCC	1 cut(s)	410
BcoDI	GTCTC	3 cut(s)	9, 273, 717
BfaI	CTAG	1 cut(s)	60
BfuI	GTATCC	1 cut(s)	410
BisI	GCNGC	2 cut(s)	57, 748
BlsI	GCNGC	2 cut(s)	58, 749
Bme1390I	CCNGG	4 cut(s)	100, 216, 344, 555
Bme18I	GGWCC	2 cut(s)	340, 372
BmgT120I	GGNCC	3 cut(s)	21, 340, 372
BmiI	GGNNCC	2 cut(s)	22, 552
BmrFI	CCNGG	4 cut(s)	100, 216, 344, 555
BpiI	GAAGAC	1 cut(s)	399
Bpu10I	CCTNAGC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	717
BsaJI	CCNNGG	2 cut(s)	214, 589
BsaXI	ACNNNNNCTCC	2 cut(s)	618, 648
Bsc4I	CCNNNNNNNGG	5 cut(s)	51, 178, 294, 364, 482
Bse3DI	GCAATG	1 cut(s)	262
BseBI	CCWGG	4 cut(s)	100, 216, 344, 555
BseDI	CCNNGG	2 cut(s)	214, 589
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	5 cut(s)	51, 178, 294, 364, 482
BseMI	GCAATG	1 cut(s)	262
BseMII	CTCAG	1 cut(s)	174
BseXI	GCAGC	2 cut(s)	68, 759
BseYI	CCCAGC	1 cut(s)	506
BshFI	GGCC	4 cut(s)	23, 588, 594, 602
BsiHKAI	GWGCWC	1 cut(s)	447
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	5 cut(s)	51, 178, 294, 364, 482
BsmAI	GTCTC	3 cut(s)	9, 273, 717
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	4 cut(s)	23, 588, 594, 602
Bso31I	GGTCTC	1 cut(s)	717
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp1407I	TGTACA	1 cut(s)	332
Bsp143I	GATC	2 cut(s)	398, 510
BspANI	GGCC	4 cut(s)	23, 588, 594, 602
BspCNI	CTCAG	1 cut(s)	173
BspLI	GGNNCC	2 cut(s)	22, 552
BspPI	GGATC	2 cut(s)	406, 518
BspTNI	GGTCTC	1 cut(s)	717
BsrDI	GCAATG	1 cut(s)	262
BsrGI	TGTACA	1 cut(s)	332
BssECI	CCNNGG	2 cut(s)	214, 589
BssMI	GATC	2 cut(s)	398, 510
BssSI	CACGAG	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	589
Bst2BI	CACGAG	1 cut(s)	221
Bst2UI	CCWGG	4 cut(s)	100, 216, 344, 555
Bst4CI	ACNGT	3 cut(s)	332, 517, 640
BstAUI	TGTACA	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	698
BstDEI	CTNAG	2 cut(s)	160, 177
BstENI	CCTNNNNNAGG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	2 cut(s)	401, 513
BstMAI	GTCTC	3 cut(s)	9, 273, 717
BstMBI	GATC	2 cut(s)	398, 510
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 559, 626, 702
BstNI	CCWGG	4 cut(s)	100, 216, 344, 555
BstSCI	CCNGG	4 cut(s)	98, 214, 342, 553
BstV1I	GCAGC	2 cut(s)	68, 759
BstV2I	GAAGAC	1 cut(s)	399
BsuI	GTATCC	1 cut(s)	410
BsuRI	GGCC	4 cut(s)	23, 588, 594, 602
BtsCI	GGATG	1 cut(s)	56
BtsI	GCAGTG	2 cut(s)	42, 707
BtsIMutI	CAGTG	2 cut(s)	42, 707
Cac8I	GCNNGC	1 cut(s)	698
CaiI	CAGNNNCTG	1 cut(s)	343
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	3 cut(s)	21, 340, 372
Csp6I	GTAC	3 cut(s)	333, 486, 648
CviAII	CATG	3 cut(s)	130, 301, 312
CviQI	GTAC	3 cut(s)	333, 486, 648
DdeI	CTNAG	2 cut(s)	160, 177
DpnI	GATC	2 cut(s)	400, 512
DpnII	GATC	2 cut(s)	398, 510
EaeI	YGGCCR	2 cut(s)	592, 600
Eco130I	CCWWGG	1 cut(s)	589
Eco31I	GGTCTC	1 cut(s)	717
Eco32I	GATATC	1 cut(s)	124
Eco47I	GGWCC	2 cut(s)	340, 372
EcoNI	CCTNNNNNAGG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	340
EcoRII	CCWGG	4 cut(s)	98, 214, 342, 553
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	589
FaeI	CATG	3 cut(s)	133, 304, 315
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	3 cut(s)	129, 300, 311
FauNDI	CATATG	1 cut(s)	597
Fnu4HI	GCNGC	2 cut(s)	57, 748
FokI	GGATG	1 cut(s)	63
Fsp4HI	GCNGC	2 cut(s)	57, 748
FspBI	CTAG	1 cut(s)	60
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	2 cut(s)	57, 748
GsaI	CCCAGC	1 cut(s)	510
HaeIII	GGCC	4 cut(s)	23, 588, 594, 602
HapII	CCGG	1 cut(s)	288
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	3 cut(s)	133, 304, 315
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	687
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	3 cut(s)	88, 125, 161
Hpy166II	GTNNAC	3 cut(s)	335, 372, 520
Hpy188I	TCNGA	2 cut(s)	163, 424
Hpy188III	TCNNGA	2 cut(s)	8, 402
Hpy8I	GTNNAC	3 cut(s)	335, 372, 520
Hpy99I	CGWCG	1 cut(s)	455
HpyAV	CCTTC	5 cut(s)	97, 176, 418, 482, 661
HpyCH4III	ACNGT	3 cut(s)	332, 517, 640
HpyCH4V	TGCA	3 cut(s)	300, 705, 747
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 559, 626, 702
HpyF3I	CTNAG	2 cut(s)	160, 177
Hsp92II	CATG	3 cut(s)	133, 304, 315
HspAI	GCGC	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	398, 510
LmnI	GCTCC	2 cut(s)	550, 626
Lsp1109I	GCAGC	2 cut(s)	68, 759
MaeI	CTAG	1 cut(s)	60
MaeIII	GTNAC	3 cut(s)	238, 259, 634
MalI	GATC	2 cut(s)	400, 512
MboI	GATC	2 cut(s)	398, 510
MboII	GAAGA	4 cut(s)	38, 145, 404, 676
MfeI	CAATTG	1 cut(s)	706
MhlI	GDGCHC	1 cut(s)	447
MlsI	TGGCCA	1 cut(s)	594
MluCI	AATT	4 cut(s)	11, 150, 266, 706
MluNI	TGGCCA	1 cut(s)	594
MmeI	TCCRAC	2 cut(s)	447, 604
MnlI	CCTC	5 cut(s)	79, 98, 182, 661, 676
Mox20I	TGGCCA	1 cut(s)	594
MscI	TGGCCA	1 cut(s)	594
MseI	TTAA	1 cut(s)	14
MslI	CAYNNNNRTG	1 cut(s)	567
Msp20I	TGGCCA	1 cut(s)	594
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	4 cut(s)	100, 216, 344, 555
MunI	CAATTG	1 cut(s)	706
MvaI	CCWGG	4 cut(s)	100, 216, 344, 555
MwoI	GCNNNNNNNGC	4 cut(s)	41, 559, 626, 702
NdeI	CATATG	1 cut(s)	597
NdeII	GATC	2 cut(s)	398, 510
NlaIII	CATG	3 cut(s)	133, 304, 315
NlaIV	GGNNCC	2 cut(s)	22, 552
NmuCI	GTSAC	2 cut(s)	238, 259
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	58, 749
PpuMI	RGGWCCY	1 cut(s)	340
Psp5II	RGGWCCY	1 cut(s)	340
Psp6I	CCWGG	4 cut(s)	98, 214, 342, 553
PspFI	CCCAGC	1 cut(s)	506
PspGI	CCWGG	4 cut(s)	98, 214, 342, 553
PspN4I	GGNNCC	2 cut(s)	22, 552
PspPI	GGNCC	3 cut(s)	21, 340, 372
PspPPI	RGGWCCY	1 cut(s)	340
PstNI	CAGNNNCTG	1 cut(s)	343
RsaI	GTAC	3 cut(s)	334, 487, 649
RsaNI	GTAC	3 cut(s)	333, 486, 648
RseI	CAYNNNNRTG	1 cut(s)	567
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	2 cut(s)	57, 748
Sau3AI	GATC	2 cut(s)	398, 510
Sau96I	GGNCC	3 cut(s)	21, 340, 372
ScrFI	CCNGG	4 cut(s)	100, 216, 344, 555
SduI	GDGCHC	1 cut(s)	447
SinI	GGWCC	2 cut(s)	340, 372
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
Sse9I	AATT	4 cut(s)	11, 150, 266, 706
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	4 cut(s)	98, 214, 342, 553
StyI	CCWWGG	1 cut(s)	589
TaaI	ACNGT	3 cut(s)	332, 517, 640
TaqI	TCGA	2 cut(s)	324, 438
TasI	AATT	4 cut(s)	11, 150, 266, 706
TatI	WGTACW	1 cut(s)	332
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	2 cut(s)	42, 707
TseFI	GTSAC	2 cut(s)	238, 259
TseI	GCWGC	2 cut(s)	56, 747
Tsp45I	GTSAC	2 cut(s)	238, 259
TspDTI	ATGAA	3 cut(s)	146, 300, 732
TspGWI	ACGGA	1 cut(s)	411
TspRI	CASTG	2 cut(s)	42, 707
VpaK11BI	GGWCC	2 cut(s)	340, 372
XagI	CCTNNNNNAGG	1 cut(s)	176
XapI	RAATTY	2 cut(s)	150, 266
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.