MD05G1104100.v1.1

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0003527
Physical Location & Seq
Reverse (-)
21683626 .. 21683790
165 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1104100.v1.1.491

Sequence Viewer

Length: 165 bp
ATGTCCGCCTTCTATGGCCCTCCCAAGCCCGATGAAGACATGATCGCTCTCATCCACCATGCCGTCTCTACTGGCGTCACCTTTCTCGACACCTCCGACATCTACGGCCCCTGCACCAACGAAATTCTCCTTAGCCACAAAATTCGGTATCAGCTTTGCGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

55

Amino Acids

5.97

Weight (kDa)

5.27

Isoelectric Point (pI)

34.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 8 - 45 4.2e-07 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 6, 159
AcsI RAATTY 2 cut(s) 123, 141
AcyI GRCGYC 1 cut(s) 75
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 70
AoxI GGCC 2 cut(s) 16, 106
ApoI RAATTY 2 cut(s) 123, 141
AspS9I GGNCC 2 cut(s) 17, 107
AsuHPI GGTGA 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 42
BceAI ACGGC 2 cut(s) 47, 121
BcoDI GTCTC 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 17, 107
BmiI GGNNCC 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 42
Bpu10I CCTNAGC 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 97
BshFI GGCC 2 cut(s) 18, 108
BsmAI GTCTC 1 cut(s) 70
BsmBI CGTCTC 1 cut(s) 70
BsnI GGCC 2 cut(s) 18, 108
Bsp143I GATC 1 cut(s) 42
BspACI CCGC 2 cut(s) 6, 159
BspANI GGCC 2 cut(s) 18, 108
BspLI GGNNCC 1 cut(s) 109
BsrI ACTGG 1 cut(s) 76
BssMI GATC 1 cut(s) 42
BssNI GRCGYC 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 131
BstF5I GGATG 1 cut(s) 51
BstKTI GATC 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 1 cut(s) 42
BstV2I GAAGAC 1 cut(s) 42
BsuRI GGCC 2 cut(s) 18, 108
BtsCI GGATG 1 cut(s) 51
Cfr13I GGNCC 2 cut(s) 17, 107
CseI GACGC 1 cut(s) 64
CviAII CATG 2 cut(s) 40, 59
CviJI RGCY 5 cut(s) 18, 28, 108, 135, 154
CviKI_1 RGCY 5 cut(s) 18, 28, 108, 135, 154
DdeI CTNAG 1 cut(s) 131
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Esp3I CGTCTC 1 cut(s) 70
FaeI CATG 2 cut(s) 43, 62
FaiI YATR 3 cut(s) 15, 41, 60
FatI CATG 2 cut(s) 39, 58
FokI GGATG 1 cut(s) 38
HaeIII GGCC 2 cut(s) 18, 108
HgaI GACGC 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 2 cut(s) 43, 62
HphI GGTGA 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 19
HpyCH4V TGCA 1 cut(s) 114
HpyF3I CTNAG 1 cut(s) 131
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 2 cut(s) 43, 62
Kzo9I GATC 1 cut(s) 42
LpnPI CCDG 2 cut(s) 57, 124
MaeIII GTNAC 1 cut(s) 76
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 1 cut(s) 47
MluCI AATT 2 cut(s) 123, 141
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 2 cut(s) 30, 103
NdeII GATC 1 cut(s) 42
NlaIII CATG 2 cut(s) 43, 62
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 2 cut(s) 17, 107
Sau3AI GATC 1 cut(s) 42
Sau96I GGNCC 2 cut(s) 17, 107
SetI ASST 3 cut(s) 83, 95, 156
SgeI CNNG 7 cut(s) 37, 41, 52, 71, 84, 98, 123
Sse9I AATT 2 cut(s) 123, 141
SsiI CCGC 2 cut(s) 6, 159
TaqI TCGA 1 cut(s) 87
TasI AATT 2 cut(s) 123, 141
TseFI GTSAC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 48
XapI RAATTY 2 cut(s) 123, 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.