Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003527

Physical Location & Seq

Genomic Coordinates Forward (+)

31904610 .. 31918863

Gene Structure 14254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG160400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGGGATGTTCGTCTTCTTTGGCCCCCTGAAGCCCGAACCAAACATGATCAAACTCATCAACCACGCCACCGACACCAGTGTCACCTTCCTTGATACTGCTGACCTTTATGGTCCCTTCACCAATGAACTTCTTATCGGCAAGTTGAGGGCCGCACCTATTGAATTTATGATAAAAACATTTAGTGCAACATTAAAGTTTTTTGAGGTAGCACTAAGATCTCAATTTAACACTAGAAGCGCATACAATGCCAAAATTGTTTGGCTTCCGGTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

92

Amino Acids

10.46

Weight (kDa)

9.52

Isoelectric Point (pI)

28.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60730
malus_domestica	MD05G1104100.v1.1
rosa_chinensis	RchiOBHm_Chr4g0409681 RchiOBHm_Chr4g0409721 RchiOBHm_Chr4g0411091 RchiOBHm_Chr4g0411131 RchiOBHm_Chr4g0411141
rosa_laevigata	RLG00000008375
rosa_multiflora	Rmu_sc0001244.1_g000004 Rmu_sc0001244.1_g000005 Rmu_sc0007879.1_g000009 Rmu_sc0033547.1_g000001
rosa_roxburghii	Rroxscaffold_5G00355720
rosa_rugosa	Rorug01G0109900
rosa_samantha	Rh4AG157600 Rh4AG163200 Rh4AG164000 Rh4AG164300 Rh4AG164500 Rh4AG164600 Rh4AG165200 Rh4AG165300 Rh4AG165900 Rh4AG166000 Rh4AG166200 Rh4BG157100 Rh4BG157300 Rh4BG163300 Rh4CG177300 Rh4CG178200 Rh4CG178600 Rh4DG159000 Rh4DG160300 Rh4DG160400 Rh4DG160900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AciI	CCGC	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	1 cut(s)	50
AgsI	TTSAA	1 cut(s)	164
AoxI	GGCC	2 cut(s)	22, 150
ApoI	RAATTY	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	3 cut(s)	23, 113, 150
AsuHPI	GGTGA	2 cut(s)	76, 112
AvaII	GGWCC	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	7
BclI	TGATCA	1 cut(s)	48
BfaI	CTAG	1 cut(s)	234
BglII	AGATCT	1 cut(s)	218
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	3 cut(s)	23, 113, 150
BmiI	GGNNCC	2 cut(s)	25, 115
BpiI	GAAGAC	1 cut(s)	7
BsaWI	WCCGGW	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	24, 152
BsiSI	CCGG	1 cut(s)	269
BslFI	GGGAC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	2 cut(s)	24, 152
Bsp143I	GATC	2 cut(s)	48, 218
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	2 cut(s)	24, 152
BspLI	GGNNCC	2 cut(s)	25, 115
BsrI	ACTGG	1 cut(s)	78
BssMI	GATC	2 cut(s)	48, 218
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstDEI	CTNAG	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	2 cut(s)	51, 221
BstMBI	GATC	2 cut(s)	48, 218
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstV2I	GAAGAC	1 cut(s)	7
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	24, 152
BtsCI	GGATG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	85
CfoI	GCGC	1 cut(s)	242
Cfr13I	GGNCC	3 cut(s)	23, 113, 150
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	4 cut(s)	24, 34, 152, 265
CviKI_1	RGCY	4 cut(s)	24, 34, 152, 265
DdeI	CTNAG	1 cut(s)	215
DpnI	GATC	2 cut(s)	50, 220
DpnII	GATC	2 cut(s)	48, 218
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	50
FaeI	CATG	1 cut(s)	49
FaiI	YATR	4 cut(s)	47, 111, 170, 244
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	1 cut(s)	45
FbaI	TGATCA	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	234
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	24, 152
HapII	CCGG	1 cut(s)	269
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	2 cut(s)	76, 112
HpyAV	CCTTC	2 cut(s)	97, 127
HpyCH4V	TGCA	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	1 cut(s)	240
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	2 cut(s)	48, 218
LpnPI	CCDG	2 cut(s)	41, 91
MaeI	CTAG	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	2 cut(s)	50, 220
MboI	GATC	2 cut(s)	48, 218
MboII	GAAGA	1 cut(s)	7
MflI	RGATCY	1 cut(s)	218
MluCI	AATT	3 cut(s)	164, 224, 255
MnlI	CCTC	2 cut(s)	141, 199
MseI	TTAA	2 cut(s)	194, 228
MspI	CCGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeII	GATC	2 cut(s)	48, 218
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	2 cut(s)	25, 115
NmuCI	GTSAC	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	154
PspN4I	GGNNCC	2 cut(s)	25, 115
PspPI	GGNCC	3 cut(s)	23, 113, 150
PsuI	RGATCY	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	194, 228
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	48, 218
Sau96I	GGNCC	3 cut(s)	23, 113, 150
SetI	ASST	5 cut(s)	89, 108, 160, 210, 278
SgeI	CNNG	8 cut(s)	40, 47, 58, 77, 90, 104, 154, 246
SinI	GGWCC	1 cut(s)	113
Sse9I	AATT	3 cut(s)	164, 224, 255
SsiI	CCGC	1 cut(s)	153
SspMI	CTAG	1 cut(s)	234
TasI	AATT	3 cut(s)	164, 224, 255
TauI	GCSGC	1 cut(s)	155
Tru1I	TTAA	2 cut(s)	194, 228
Tru9I	TTAA	2 cut(s)	194, 228
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	141
TspRI	CASTG	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	164
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.