Rh4CG178200

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0003527
Physical Location & Seq
Forward (+)
38764617 .. 38767836
3220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG178200.1

Sequence Viewer

Length: 327 bp
ATGGGCATGTCAGCCTTCTATGGCCCCCCAAAGCCCAAAGCTGACATGATCAAGCTCATCCACCATGCCGTCGACTCCGGCGTCACCTTTCTCGACACCTCCGACGTCTACGGTCCCTACACCAACGAAATGCTCCTCGGCAAGATTACAGTGATCATGGCTAGAGGACTGTTGAAGATATCTGAGATATTATTGCCTTGTGGTAACTATTGTCTTTTTCTTATCCGGTTACTTTTGCCTGATCTGTTCAACAAGGCTCTTCACCATACTGGTTTTGGTTCTATCAGCTCATTGTTTTCCATTGAAGATATGTCTCAGCCTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

108

Amino Acids

11.93

Weight (kDa)

6.48

Isoelectric Point (pI)

33.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 2 - 49 3.3e-07 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AatII GACGTC 1 cut(s) 108
AccI GTMKAC 2 cut(s) 72, 108
AcyI GRCGYC 2 cut(s) 81, 105
AgsI TTSAA 3 cut(s) 175, 250, 305
AluBI AGCT 3 cut(s) 41, 55, 288
AluI AGCT 3 cut(s) 41, 55, 288
Alw26I GTCTC 1 cut(s) 318
AoxI GGCC 1 cut(s) 22
AspS9I GGNCC 2 cut(s) 23, 113
AsuHPI GGTGA 2 cut(s) 76, 254
AvaII GGWCC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 53
BclI TGATCA 2 cut(s) 48, 153
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 1 cut(s) 162
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 2 cut(s) 23, 113
BmiI GGNNCC 2 cut(s) 25, 115
BsaHI GRCGYC 2 cut(s) 81, 105
BsaJI CCNNGG 1 cut(s) 136
BsaWI WCCGGW 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 274
BseRI GAGGAG 1 cut(s) 125
BshFI GGCC 1 cut(s) 24
BsiSI CCGG 2 cut(s) 78, 226
BslFI GGGAC 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 99
BsnI GGCC 1 cut(s) 24
Bsp143I GATC 3 cut(s) 48, 153, 241
BspANI GGCC 1 cut(s) 24
BspCNI CTCAG 1 cut(s) 175
BspLI GGNNCC 2 cut(s) 25, 115
BspQI GCTCTTC 1 cut(s) 264
BsrI ACTGG 1 cut(s) 274
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 3 cut(s) 48, 153, 241
BssNI GRCGYC 2 cut(s) 81, 105
Bst4CI ACNGT 3 cut(s) 113, 151, 171
Bst6I CTCTTC 1 cut(s) 264
BstACI GRCGYC 2 cut(s) 81, 105
BstDEI CTNAG 2 cut(s) 183, 315
BstF5I GGATG 1 cut(s) 57
BstKTI GATC 3 cut(s) 51, 156, 244
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 3 cut(s) 48, 153, 241
BstNSI RCATGY 1 cut(s) 10
BsuRI GGCC 1 cut(s) 24
BtsCI GGATG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 156
Cfr13I GGNCC 2 cut(s) 23, 113
CseI GACGC 1 cut(s) 70
CviAII CATG 4 cut(s) 7, 46, 65, 157
CviJI RGCY 9 cut(s) 14, 24, 34, 41, 55, 161, 257, 288, 319
CviKI_1 RGCY 9 cut(s) 14, 24, 34, 41, 55, 161, 257, 288, 319
DdeI CTNAG 2 cut(s) 183, 315
DpnI GATC 3 cut(s) 50, 155, 243
DpnII GATC 3 cut(s) 48, 153, 241
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco32I GATATC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 113
EcoRV GATATC 1 cut(s) 180
FaeI CATG 4 cut(s) 10, 49, 68, 160
FaiI YATR 7 cut(s) 8, 21, 47, 66, 158, 267, 311
FaqI GGGAC 1 cut(s) 99
FatI CATG 4 cut(s) 6, 45, 64, 156
FbaI TGATCA 2 cut(s) 48, 153
FblI GTMKAC 2 cut(s) 72, 108
FokI GGATG 1 cut(s) 44
FspBI CTAG 1 cut(s) 162
HaeIII GGCC 1 cut(s) 24
HapII CCGG 2 cut(s) 78, 226
HgaI GACGC 1 cut(s) 70
Hin1I GRCGYC 2 cut(s) 81, 105
Hin1II CATG 4 cut(s) 10, 49, 68, 160
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 1 cut(s) 74
HpaII CCGG 2 cut(s) 78, 226
HphI GGTGA 2 cut(s) 76, 254
Hpy166II GTNNAC 2 cut(s) 73, 109
Hpy188I TCNGA 2 cut(s) 103, 184
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 2 cut(s) 73, 109
Hpy99I CGWCG 2 cut(s) 74, 107
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 3 cut(s) 113, 151, 171
HpyCH4IV ACGT 1 cut(s) 105
HpyF3I CTNAG 2 cut(s) 183, 315
HpySE526I ACGT 1 cut(s) 105
Hsp92I GRCGYC 2 cut(s) 81, 105
Hsp92II CATG 4 cut(s) 10, 49, 68, 160
Ksp22I TGATCA 2 cut(s) 48, 153
Kzo9I GATC 3 cut(s) 48, 153, 241
LguI GCTCTTC 1 cut(s) 264
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 4 cut(s) 91, 239, 252, 255
MaeI CTAG 1 cut(s) 162
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 3 cut(s) 82, 203, 228
MalI GATC 3 cut(s) 50, 155, 243
MboI GATC 3 cut(s) 48, 153, 241
MboII GAAGA 3 cut(s) 187, 251, 317
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 3 cut(s) 109, 146, 158
MseI TTAA 1 cut(s) 325
MspI CCGG 2 cut(s) 78, 226
NdeII GATC 3 cut(s) 48, 153, 241
NlaIII CATG 4 cut(s) 10, 49, 68, 160
NlaIV GGNNCC 2 cut(s) 25, 115
NmeAIII GCCGAG 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 82
NspI RCATGY 1 cut(s) 10
PciSI GCTCTTC 1 cut(s) 264
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 99
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PspN4I GGNNCC 2 cut(s) 25, 115
PspPI GGNCC 2 cut(s) 23, 113
SalI GTCGAC 1 cut(s) 71
SapI GCTCTTC 1 cut(s) 264
SaqAI TTAA 1 cut(s) 325
Sau3AI GATC 3 cut(s) 48, 153, 241
Sau96I GGNCC 2 cut(s) 23, 113
SchI GAGTC 1 cut(s) 68
SetI ASST 6 cut(s) 43, 57, 89, 101, 108, 290
SinI GGWCC 1 cut(s) 113
SspMI CTAG 1 cut(s) 162
TaaI ACNGT 3 cut(s) 113, 151, 171
TaiI ACGT 1 cut(s) 108
TaqI TCGA 2 cut(s) 72, 93
Tru1I TTAA 1 cut(s) 325
Tru9I TTAA 1 cut(s) 325
TscAI CASTG 1 cut(s) 156
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspRI CASTG 1 cut(s) 156
VpaK11BI GGWCC 1 cut(s) 113
XceI RCATGY 1 cut(s) 10
XcmI CCANNNNNNNNNTGG 1 cut(s) 272
XmiI GTMKAC 2 cut(s) 72, 108
XspI CTAG 1 cut(s) 162
ZraI GACGTC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.