Rh4BG157100

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0003527
Physical Location & Seq
Forward (+)
28331807 .. 28339001
7195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG157100.1

Sequence Viewer

Length: 438 bp
ATGACGAGGATGAAGCTGGGGACACAAGACCCTGAGCGAGGTCTTGGCTCAAGGACTGGGTTGCATGGGCATGTCCATCTTCTATGCCCCCCCCCGAAGCCTGAACCAGACAAGTTCAAACTCATCCACCACGCCATCGACGCCAGCGTCACCTTCCTTGATAACTCTGACATTTACGGTCCCTTCACCAATGAACTTCTTCTGGGCAAAGCTTTGAGTGGAGGCGTGAGAGACAAGGTTGATTTGGCCACCAAATTCGGAATCAGCTTTGAGGACAACAAGGGAGAGATTATTCGAGGGGAGCCGGCATATGTGAGAGCTGCTTTTGAAGAAAGCTTGAAACGCCTTGGTGTAAATTCTATTGATCTGTATTATGAGCATCAGAGTGACACCCGTATCCCCATTGAAGTCACGCTGAAGATCCTATACACAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

145

Amino Acids

16.13

Weight (kDa)

6.29

Isoelectric Point (pI)

25.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 33 - 142 1.4e-19 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
AclWI GGATC 1 cut(s) 415
AcoI YGGCCR 1 cut(s) 246
AcsI RAATTY 2 cut(s) 254, 355
AcuI CTGAAG 1 cut(s) 437
AcyI GRCGYC 1 cut(s) 141
AfiI CCNNNNNNNGG 1 cut(s) 38
AgsI TTSAA 4 cut(s) 118, 329, 340, 407
AluBI AGCT 5 cut(s) 16, 212, 267, 320, 336
AluI AGCT 5 cut(s) 16, 212, 267, 320, 336
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 1 cut(s) 415
AoxI GGCC 1 cut(s) 246
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 2 cut(s) 254, 355
Asp700I GAANNNNTTC 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 179
AsuHPI GGTGA 2 cut(s) 142, 178
AvaII GGWCC 1 cut(s) 179
BaeI ACNNNNGTAYC 2 cut(s) 379, 412
BalI TGGCCA 1 cut(s) 248
BarI GAAGNNNNNNTAC 1 cut(s) 410
BbvI GCAGC 1 cut(s) 307
BccI CCATC 2 cut(s) 84, 143
BciVI GTATCC 1 cut(s) 407
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 1 cut(s) 436
BfuI GTATCC 1 cut(s) 407
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 2 cut(s) 181, 303
BmrI ACTGGG 1 cut(s) 66
BmsI GCATC 1 cut(s) 388
BmuI ACTGGG 1 cut(s) 66
Bpu10I CCTNAGC 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 34
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 346
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse118I RCCGGY 1 cut(s) 304
Bse1I ACTGG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 346
BseGI GGATG 2 cut(s) 15, 123
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 61
BseXI GCAGC 1 cut(s) 307
BseYI CCCAGC 1 cut(s) 16
BshFI GGCC 1 cut(s) 248
BsiSI CCGG 1 cut(s) 305
BslFI GGGAC 2 cut(s) 34, 165
BslI CCNNNNNNNGG 1 cut(s) 38
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 2 cut(s) 34, 165
BsnI GGCC 1 cut(s) 248
Bsp143I GATC 2 cut(s) 364, 420
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 1 cut(s) 25
BspLI GGNNCC 2 cut(s) 181, 303
BspPI GGATC 1 cut(s) 415
BsrFI RCCGGY 1 cut(s) 304
BsrI ACTGG 1 cut(s) 61
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 346
BssMI GATC 2 cut(s) 364, 420
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 346
Bst4CI ACNGT 1 cut(s) 179
BstACI GRCGYC 1 cut(s) 141
BstC8I GCNNGC 2 cut(s) 145, 306
BstDEI CTNAG 1 cut(s) 33
BstENI CCTNNNNNAGG 1 cut(s) 36
BstF5I GGATG 2 cut(s) 15, 123
BstKTI GATC 2 cut(s) 367, 423
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 2 cut(s) 364, 420
BstMWI GCNNNNNNNGC 2 cut(s) 140, 342
BstNSI RCATGY 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 307
BstX2I RGATCY 1 cut(s) 420
BstYI RGATCY 1 cut(s) 420
BsuI GTATCC 1 cut(s) 407
BsuRI GGCC 1 cut(s) 248
BtsCI GGATG 2 cut(s) 15, 123
Cac8I GCNNGC 2 cut(s) 145, 306
Cfr10I RCCGGY 1 cut(s) 304
Cfr13I GGNCC 1 cut(s) 179
CseI GACGC 2 cut(s) 136, 149
CviAII CATG 2 cut(s) 65, 71
DdeI CTNAG 1 cut(s) 33
DpnI GATC 2 cut(s) 366, 422
DpnII GATC 2 cut(s) 364, 420
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
EaeI YGGCCR 1 cut(s) 246
Eco130I CCWWGG 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 437
EcoNI CCTNNNNNAGG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 346
FaeI CATG 2 cut(s) 68, 74
FaiI YATR 7 cut(s) 66, 72, 85, 310, 312, 375, 427
FaqI GGGAC 2 cut(s) 34, 165
FatI CATG 2 cut(s) 64, 70
FauNDI CATATG 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 2 cut(s) 22, 110
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 1 cut(s) 436
GluI GCNGC 1 cut(s) 321
GsaI CCCAGC 1 cut(s) 20
HaeIII GGCC 1 cut(s) 248
HapII CCGG 1 cut(s) 305
HgaI GACGC 2 cut(s) 136, 149
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 2 cut(s) 68, 74
HindIII AAGCTT 2 cut(s) 210, 334
HinfI GANTC 1 cut(s) 261
HpaII CCGG 1 cut(s) 305
HphI GGTGA 2 cut(s) 142, 178
Hpy188I TCNGA 3 cut(s) 169, 260, 384
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 163, 193
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 1 cut(s) 64
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 342
HpyF3I CTNAG 1 cut(s) 33
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 2 cut(s) 68, 74
KroI GCCGGC 1 cut(s) 304
KroNI GCCGGC 1 cut(s) 306
Kzo9I GATC 2 cut(s) 364, 420
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 8 cut(s) 2, 42, 45, 114, 120, 157, 188, 318
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 1 cut(s) 388
MaeI CTAG 1 cut(s) 436
MaeIII GTNAC 3 cut(s) 148, 386, 409
MalI GATC 2 cut(s) 366, 422
MboI GATC 2 cut(s) 364, 420
MboII GAAGA 4 cut(s) 71, 191, 341, 430
MflI RGATCY 1 cut(s) 420
MlsI TGGCCA 1 cut(s) 248
MluCI AATT 2 cut(s) 254, 355
MluNI TGGCCA 1 cut(s) 248
MnlI CCTC 4 cut(s) 32, 215, 265, 290
Mox20I TGGCCA 1 cut(s) 248
MroNI GCCGGC 1 cut(s) 304
MroXI GAANNNNTTC 1 cut(s) 198
MscI TGGCCA 1 cut(s) 248
MslI CAYNNNNRTG 2 cut(s) 69, 384
Msp20I TGGCCA 1 cut(s) 248
MspI CCGG 1 cut(s) 305
MwoI GCNNNNNNNGC 2 cut(s) 140, 342
NaeI GCCGGC 1 cut(s) 306
NdeI CATATG 1 cut(s) 310
NdeII GATC 2 cut(s) 364, 420
NgoMIV GCCGGC 1 cut(s) 304
NlaIII CATG 2 cut(s) 68, 74
NlaIV GGNNCC 2 cut(s) 181, 303
NmuCI GTSAC 3 cut(s) 148, 386, 409
NspI RCATGY 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PdiI GCCGGC 1 cut(s) 306
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 261
PkrI GCNGC 1 cut(s) 322
PspFI CCCAGC 1 cut(s) 16
PspN4I GGNNCC 2 cut(s) 181, 303
PspPI GGNCC 1 cut(s) 179
PsuI RGATCY 1 cut(s) 420
RseI CAYNNNNRTG 2 cut(s) 69, 384
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 2 cut(s) 364, 420
Sau96I GGNCC 1 cut(s) 179
SetI ASST 8 cut(s) 18, 43, 155, 214, 240, 269, 322, 338
SfaNI GCATC 1 cut(s) 388
SinI GGWCC 1 cut(s) 179
SmiMI CAYNNNNRTG 2 cut(s) 69, 384
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 2 cut(s) 254, 355
SspMI CTAG 1 cut(s) 436
StyI CCWWGG 1 cut(s) 346
TaaI ACNGT 1 cut(s) 179
TaqI TCGA 2 cut(s) 138, 295
TasI AATT 2 cut(s) 254, 355
TfiI GAWTC 1 cut(s) 261
TseFI GTSAC 3 cut(s) 148, 386, 409
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 3 cut(s) 148, 386, 409
TspDTI ATGAA 2 cut(s) 26, 207
VpaK11BI GGWCC 1 cut(s) 179
XagI CCTNNNNNAGG 1 cut(s) 36
XapI RAATTY 2 cut(s) 254, 355
XceI RCATGY 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.