Rh4AG165900

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0003527
Physical Location & Seq
Forward (+)
41836425 .. 41836799
375 bp
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UTR
Exon/CDS
Intron
Rh4AG165900.1

Sequence Viewer

Length: 294 bp
ATGGCCAGCATCATCAAGAGGATAAAGCTCCAGTCACAAGGCCTAGAGGTTTCGGCTCAAGGACTGGGTTGCATGGGCATGTCTGTCCCCCCGAAGCCCGAACCCAACATGATCAAGCTCATCCACCATGCCGTCGATGCTGGCATCACCTTCCTTGATACCGCTGACGTTTACGGTCCCTTCACCAACGAACTTCTTCTCGGCAAGGCTTTAAGTGGAAGAGAAAGAGACAAGGTTGAACTGGCCACCAAATTTGGTATCAACTTTGAGGACGACAAGAGAGAGATTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

97

Amino Acids

10.63

Weight (kDa)

6.08

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 22 - 87 3.6e-13 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 162
AcoI YGGCCR 2 cut(s) 3, 243
AcsI RAATTY 1 cut(s) 251
AgsI TTSAA 1 cut(s) 239
AluBI AGCT 2 cut(s) 28, 118
AluI AGCT 2 cut(s) 28, 118
Alw26I GTCTC 1 cut(s) 222
AoxI GGCC 3 cut(s) 3, 40, 243
ApoI RAATTY 1 cut(s) 251
Asp700I GAANNNNTTC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 2 cut(s) 139, 175
AvaII GGWCC 1 cut(s) 176
BalI TGGCCA 2 cut(s) 5, 245
BceAI ACGGC 1 cut(s) 116
BclI TGATCA 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 1 cut(s) 44
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 178
BmrI ACTGGG 1 cut(s) 74
BmsI GCATC 3 cut(s) 18, 127, 153
BmuI ACTGGG 1 cut(s) 74
BpmI CTGGAG 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 42
Bse1I ACTGG 3 cut(s) 31, 69, 246
BseGI GGATG 1 cut(s) 120
BseNI ACTGG 3 cut(s) 31, 69, 246
BshFI GGCC 3 cut(s) 5, 42, 245
BslFI GGGAC 2 cut(s) 71, 162
BsmAI GTCTC 1 cut(s) 222
BsmFI GGGAC 2 cut(s) 71, 162
BsnI GGCC 3 cut(s) 5, 42, 245
Bsp143I GATC 1 cut(s) 111
BspACI CCGC 1 cut(s) 162
BspANI GGCC 3 cut(s) 5, 42, 245
BspLI GGNNCC 1 cut(s) 178
BsrI ACTGG 3 cut(s) 31, 69, 246
BssMI GATC 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 214
BstC8I GCNNGC 2 cut(s) 7, 142
BstF5I GGATG 1 cut(s) 120
BstKTI GATC 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 1 cut(s) 111
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNSI RCATGY 1 cut(s) 82
BsuRI GGCC 3 cut(s) 5, 42, 245
BtsCI GGATG 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 7, 142
Cfr13I GGNCC 1 cut(s) 176
CspCI CAANNNNNGTGG 2 cut(s) 235, 270
CviAII CATG 4 cut(s) 73, 79, 109, 128
CviJI RGCY 8 cut(s) 5, 28, 42, 56, 97, 118, 209, 245
CviKI_1 RGCY 8 cut(s) 5, 28, 42, 56, 97, 118, 209, 245
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
EaeI YGGCCR 2 cut(s) 3, 243
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
Eco147I AGGCCT 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 176
FaeI CATG 4 cut(s) 76, 82, 112, 131
FaiI YATR 4 cut(s) 74, 80, 110, 129
FaqI GGGAC 2 cut(s) 71, 162
FatI CATG 4 cut(s) 72, 78, 108, 127
FbaI TGATCA 1 cut(s) 111
FokI GGATG 1 cut(s) 107
FspBI CTAG 1 cut(s) 44
GsuI CTGGAG 1 cut(s) 14
HaeIII GGCC 3 cut(s) 5, 42, 245
Hin1II CATG 4 cut(s) 76, 82, 112, 131
HphI GGTGA 2 cut(s) 139, 175
Hpy166II GTNNAC 1 cut(s) 172
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 2 cut(s) 160, 190
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 4 cut(s) 76, 82, 112, 131
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 1 cut(s) 111
LmnI GCTCC 1 cut(s) 33
LpnPI CCDG 5 cut(s) 19, 44, 50, 126, 227
LweI GCATC 3 cut(s) 18, 127, 153
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 33
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 2 cut(s) 188, 231
MlsI TGGCCA 2 cut(s) 5, 245
MluCI AATT 1 cut(s) 251
MluNI TGGCCA 2 cut(s) 5, 245
MnlI CCTC 3 cut(s) 12, 40, 262
Mox20I TGGCCA 2 cut(s) 5, 245
MroXI GAANNNNTTC 1 cut(s) 195
MscI TGGCCA 2 cut(s) 5, 245
MseI TTAA 1 cut(s) 212
MslI CAYNNNNRTG 1 cut(s) 77
Msp20I TGGCCA 2 cut(s) 5, 245
MspA1I CMGCKG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 1 cut(s) 111
NlaIII CATG 4 cut(s) 76, 82, 112, 131
NlaIV GGNNCC 1 cut(s) 178
NmeAIII GCCGAG 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 33
NspI RCATGY 1 cut(s) 82
PceI AGGCCT 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 77
SaqAI TTAA 1 cut(s) 212
Sau3AI GATC 1 cut(s) 111
Sau96I GGNCC 1 cut(s) 176
SetI ASST 6 cut(s) 30, 51, 120, 152, 171, 237
SfaNI GCATC 3 cut(s) 18, 127, 153
SinI GGWCC 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 77
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
Sse9I AATT 1 cut(s) 251
SseBI AGGCCT 1 cut(s) 42
SsiI CCGC 1 cut(s) 162
SspMI CTAG 1 cut(s) 44
StuI AGGCCT 1 cut(s) 42
TaaI ACNGT 1 cut(s) 176
TaiI ACGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 135
TasI AATT 1 cut(s) 251
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TseFI GTSAC 1 cut(s) 33
Tsp45I GTSAC 1 cut(s) 33
VpaK11BI GGWCC 1 cut(s) 176
XapI RAATTY 1 cut(s) 251
XceI RCATGY 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.