Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033547.1

Orthogroup ID

OG0003527

Physical Location & Seq

Genomic Coordinates Forward (+)

330 .. 776

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033547.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 362 bp

atggcgagcatcaggaggatgaagctggggtcacaaggcctggaggtctcggctcaagggctgggttgcgtgggcatgtccgtcttctctggccccccgaagcctgaagccgacatgatcaagctcatccaccacgccatcgacgccggcgtcgccttccttgataccgctgacgtttacggtcccttcaccaacgaacttcttcttggcaaggctttgagtggaggggtgagagacaaggttgaattggccaccaaatttggtatcagctttgaggacagcaagagagagattattcgaggcgacccggcatatgtcaggtctgcttgtgaaggaagcttgaaacgacttggtgtagattc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

121

Amino Acids

12.83

Weight (kDa)

6.72

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60730
malus_domestica	MD05G1104100.v1.1
rosa_chinensis	RchiOBHm_Chr4g0409681 RchiOBHm_Chr4g0409721 RchiOBHm_Chr4g0411091 RchiOBHm_Chr4g0411131 RchiOBHm_Chr4g0411141
rosa_laevigata	RLG00000008375
rosa_multiflora	Rmu_sc0001244.1_g000004 Rmu_sc0001244.1_g000005 Rmu_sc0007879.1_g000009 Rmu_sc0033547.1_g000001
rosa_roxburghii	Rroxscaffold_5G00355720
rosa_rugosa	Rorug01G0109900
rosa_samantha	Rh4AG157600 Rh4AG163200 Rh4AG164000 Rh4AG164300 Rh4AG164500 Rh4AG164600 Rh4AG165200 Rh4AG165300 Rh4AG165900 Rh4AG166000 Rh4AG166200 Rh4BG157100 Rh4BG157300 Rh4BG163300 Rh4CG177300 Rh4CG178200 Rh4CG178600 Rh4DG159000 Rh4DG160300 Rh4DG160400 Rh4DG160900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	149
AciI	CCGC	1 cut(s)	168
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	126
AcyI	GRCGYC	2 cut(s)	144, 150
AgsI	TTSAA	2 cut(s)	245, 343
AjnI	CCWGG	1 cut(s)	39
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	4 cut(s)	25, 124, 270, 339
AluI	AGCT	4 cut(s)	25, 124, 270, 339
Alw26I	GTCTC	2 cut(s)	52, 228
AoxI	GGCC	3 cut(s)	37, 91, 249
ApoI	RAATTY	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	201
AspS9I	GGNCC	2 cut(s)	92, 182
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	2 cut(s)	181, 241
AvaII	GGWCC	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	76
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	41
BclI	TGATCA	1 cut(s)	117
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	2 cut(s)	52, 228
Bme1390I	CCNGG	2 cut(s)	41, 308
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	2 cut(s)	92, 182
BmiI	GGNNCC	2 cut(s)	94, 184
BmrFI	CCNGG	2 cut(s)	41, 308
BmsI	GCATC	1 cut(s)	18
BpiI	GAAGAC	1 cut(s)	76
BpmI	CTGGAG	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	308
BsaHI	GRCGYC	2 cut(s)	144, 150
BsaI	GGTCTC	1 cut(s)	52
Bse118I	RCCGGY	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	41
BseGI	GGATG	2 cut(s)	24, 126
BseYI	CCCAGC	2 cut(s)	25, 61
BshFI	GGCC	3 cut(s)	39, 93, 251
BsiSI	CCGG	2 cut(s)	147, 308
BslFI	GGGAC	1 cut(s)	168
BsmAI	GTCTC	2 cut(s)	52, 228
BsmFI	GGGAC	1 cut(s)	168
BsnI	GGCC	3 cut(s)	39, 93, 251
Bso31I	GGTCTC	1 cut(s)	52
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	3 cut(s)	39, 93, 251
BspLI	GGNNCC	2 cut(s)	94, 184
BspTNI	GGTCTC	1 cut(s)	52
BsrFI	RCCGGY	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	146
BssMI	GATC	1 cut(s)	117
BssNI	GRCGYC	2 cut(s)	144, 150
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	182
BstACI	GRCGYC	2 cut(s)	144, 150
BstC8I	GCNNGC	2 cut(s)	7, 148
BstF5I	GGATG	2 cut(s)	24, 126
BstKTI	GATC	1 cut(s)	120
BstMAI	GTCTC	2 cut(s)	52, 228
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 152
BstNI	CCWGG	1 cut(s)	41
BstNSI	RCATGY	1 cut(s)	79
BstSCI	CCNGG	2 cut(s)	39, 306
BstV2I	GAAGAC	1 cut(s)	76
BsuRI	GGCC	3 cut(s)	39, 93, 251
BtsCI	GGATG	2 cut(s)	24, 126
Cac8I	GCNNGC	2 cut(s)	7, 148
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	92, 182
CseI	GACGC	2 cut(s)	139, 152
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	2 cut(s)	76, 115
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
DrdI	GACNNNNNNGTC	1 cut(s)	149
DseDI	GACNNNNNNGTC	1 cut(s)	149
EaeI	YGGCCR	1 cut(s)	249
Eco147I	AGGCCT	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	39
FaeI	CATG	2 cut(s)	79, 118
FaiI	YATR	4 cut(s)	77, 116, 313, 315
FaqI	GGGAC	1 cut(s)	168
FatI	CATG	2 cut(s)	75, 114
FauNDI	CATATG	1 cut(s)	313
FbaI	TGATCA	1 cut(s)	117
FokI	GGATG	2 cut(s)	31, 113
GsaI	CCCAGC	2 cut(s)	29, 65
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	3 cut(s)	39, 93, 251
HapII	CCGG	2 cut(s)	147, 308
HgaI	GACGC	2 cut(s)	139, 152
Hin1I	GRCGYC	2 cut(s)	144, 150
Hin1II	CATG	2 cut(s)	79, 118
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	1 cut(s)	359
HpaII	CCGG	2 cut(s)	147, 308
HphI	GGTGA	2 cut(s)	181, 241
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	13
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	2 cut(s)	146, 155
HpyAV	CCTTC	3 cut(s)	166, 196, 326
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 152
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	2 cut(s)	144, 150
Hsp92II	CATG	2 cut(s)	79, 118
KroI	GCCGGC	1 cut(s)	146
KroNI	GCCGGC	1 cut(s)	148
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	1 cut(s)	117
LpnPI	CCDG	9 cut(s)	11, 26, 47, 53, 75, 117, 160, 304, 321
LweI	GCATC	1 cut(s)	18
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	2 cut(s)	76, 194
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	2 cut(s)	245, 257
MluNI	TGGCCA	1 cut(s)	251
MnlI	CCTC	5 cut(s)	9, 37, 218, 268, 293
Mox20I	TGGCCA	1 cut(s)	251
MreI	CGCCGGCG	1 cut(s)	146
MroNI	GCCGGC	1 cut(s)	146
MroXI	GAANNNNTTC	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	251
Msp20I	TGGCCA	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	2 cut(s)	147, 308
MspR9I	CCNGG	2 cut(s)	41, 308
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	143, 152
NaeI	GCCGGC	1 cut(s)	148
NciI	CCSGG	1 cut(s)	308
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	1 cut(s)	117
NgoMIV	GCCGGC	1 cut(s)	146
NlaIII	CATG	2 cut(s)	79, 118
NlaIV	GGNNCC	2 cut(s)	94, 184
NmeAIII	GCCGAG	1 cut(s)	29
NmuCI	GTSAC	1 cut(s)	30
NspI	RCATGY	1 cut(s)	79
PceI	AGGCCT	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PdiI	GCCGGC	1 cut(s)	148
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	39
PspFI	CCCAGC	2 cut(s)	25, 61
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	2 cut(s)	94, 184
PspPI	GGNCC	2 cut(s)	92, 182
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	2 cut(s)	92, 182
ScrFI	CCNGG	2 cut(s)	41, 308
SetI	ASST	8 cut(s)	27, 48, 126, 177, 243, 272, 323, 341
SfaNI	GCATC	1 cut(s)	18
SgrAI	CRCCGGYG	1 cut(s)	146
SinI	GGWCC	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	54
SmoI	CTYRAG	1 cut(s)	54
Sse9I	AATT	2 cut(s)	245, 257
SseBI	AGGCCT	1 cut(s)	39
SsiI	CCGC	1 cut(s)	168
StuI	AGGCCT	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	39, 306
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	141, 298
TasI	AATT	2 cut(s)	245, 257
TfiI	GAWTC	1 cut(s)	359
TseFI	GTSAC	1 cut(s)	30
Tsp45I	GTSAC	1 cut(s)	30
TspDTI	ATGAA	1 cut(s)	35
TspGWI	ACGGA	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.