RchiOBHm_Chr4g0409681

reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0003527
Physical Location & Seq
Forward (+)
33329100 .. 33329643
544 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38066

Sequence Viewer

Length: 468 bp
ATGACCAGCAAGAGGAGGATGAAGCTGGGGTCACAAGACGCTGAGCGAGGTCTTGGCTCAAGGACTGGGTTGCATGGGCATGTCCATCTTCTATGCCCCCCCCCCAAGCCCGAACCAGACAAGTTCAAACTCATCCACCACGCCATCGACGCCAGCGTCACCTTCCTTGATAACTCTGACGTTTACGGTCCCTTCACCAACGAACTTCTTCTGGGCAAAGCTTTGAGTGGAGGCGTGAGAGACAAGGTTGATTTGGCCACCAAATTCGGTATCAGCTTTGAGGACAACAAGGGAGAGATTATTCGAGGGGAGCCGGCATATGTGAGAGCTGCTTTTGAAGAAAGCTTGAATCGCCTTGGTGTAAATTCTATTGATCTCTATTATGAGCATCGGAGTGACACCCATATCCCCATTGAAGTCACGGTCTGTTTTGTTCTTCAATCTCTCTGCATCAAGTCATTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

155

Amino Acids

17.22

Weight (kDa)

6.65

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 36 - 142 6.8e-19 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 155
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 2 cut(s) 263, 364
AcyI GRCGYC 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 5 cut(s) 127, 338, 349, 416, 440
AluBI AGCT 5 cut(s) 25, 221, 276, 329, 345
AluI AGCT 5 cut(s) 25, 221, 276, 329, 345
Alw26I GTCTC 1 cut(s) 234
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 329
ApoI RAATTY 2 cut(s) 263, 364
Asp700I GAANNNNTTC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 151, 187
AvaII GGWCC 1 cut(s) 188
BalI TGGCCA 1 cut(s) 257
BbvI GCAGC 1 cut(s) 316
BccI CCATC 2 cut(s) 93, 152
BcoDI GTCTC 1 cut(s) 234
BisI GCNGC 1 cut(s) 330
BlpI GCTNAGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 331
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 2 cut(s) 190, 312
BmrI ACTGGG 1 cut(s) 75
BmsI GCATC 2 cut(s) 397, 459
BmuI ACTGGG 1 cut(s) 75
Bpu1102I GCTNAGC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse118I RCCGGY 1 cut(s) 313
Bse1I ACTGG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 2 cut(s) 24, 132
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 70
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 316
BseYI CCCAGC 1 cut(s) 25
BshFI GGCC 1 cut(s) 257
BsiSI CCGG 1 cut(s) 314
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 174
BsnI GGCC 1 cut(s) 257
Bsp143I GATC 1 cut(s) 373
Bsp1720I GCTNAGC 1 cut(s) 42
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 1 cut(s) 34
BspLI GGNNCC 2 cut(s) 190, 312
BsrFI RCCGGY 1 cut(s) 313
BsrI ACTGG 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 1 cut(s) 373
BssNI GRCGYC 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 355
Bst4CI ACNGT 2 cut(s) 188, 424
BstACI GRCGYC 1 cut(s) 150
BstC8I GCNNGC 2 cut(s) 154, 315
BstDEI CTNAG 1 cut(s) 42
BstF5I GGATG 2 cut(s) 24, 132
BstKTI GATC 1 cut(s) 376
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 1 cut(s) 373
BstMWI GCNNNNNNNGC 2 cut(s) 149, 351
BstNSI RCATGY 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 316
BsuRI GGCC 1 cut(s) 257
BtsCI GGATG 2 cut(s) 24, 132
Cac8I GCNNGC 2 cut(s) 154, 315
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 188
CseI GACGC 3 cut(s) 47, 145, 158
CviAII CATG 2 cut(s) 74, 80
CviJI RGCY 9 cut(s) 25, 57, 109, 221, 257, 276, 313, 329, 345
CviKI_1 RGCY 9 cut(s) 25, 57, 109, 221, 257, 276, 313, 329, 345
DdeI CTNAG 1 cut(s) 42
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
DrdI GACNNNNNNGTC 1 cut(s) 155
DseDI GACNNNNNNGTC 1 cut(s) 155
EaeI YGGCCR 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 2 cut(s) 77, 83
FaiI YATR 7 cut(s) 75, 81, 94, 319, 321, 384, 405
FaqI GGGAC 1 cut(s) 174
FatI CATG 2 cut(s) 73, 79
FauNDI CATATG 1 cut(s) 319
Fnu4HI GCNGC 1 cut(s) 330
FokI GGATG 2 cut(s) 31, 119
Fsp4HI GCNGC 1 cut(s) 330
GluI GCNGC 1 cut(s) 330
GsaI CCCAGC 1 cut(s) 29
HaeIII GGCC 1 cut(s) 257
HapII CCGG 1 cut(s) 314
HgaI GACGC 3 cut(s) 47, 145, 158
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 2 cut(s) 77, 83
HindIII AAGCTT 2 cut(s) 219, 343
HinfI GANTC 1 cut(s) 349
HpaII CCGG 1 cut(s) 314
HphI GGTGA 2 cut(s) 151, 187
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 178, 393
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 2 cut(s) 172, 202
HpyCH4III ACNGT 2 cut(s) 188, 424
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 73, 450
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 351
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 2 cut(s) 77, 83
KroI GCCGGC 1 cut(s) 313
KroNI GCCGGC 1 cut(s) 315
Kzo9I GATC 1 cut(s) 373
LmnI GCTCC 1 cut(s) 310
LpnPI CCDG 7 cut(s) 11, 19, 51, 129, 166, 197, 327
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 2 cut(s) 397, 459
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 4 cut(s) 30, 157, 395, 418
MalI GATC 1 cut(s) 375
MboI GATC 1 cut(s) 373
MboII GAAGA 4 cut(s) 80, 200, 350, 428
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 2 cut(s) 263, 364
MluNI TGGCCA 1 cut(s) 257
MnlI CCTC 6 cut(s) 6, 9, 41, 224, 274, 299
Mox20I TGGCCA 1 cut(s) 257
MroNI GCCGGC 1 cut(s) 313
MroXI GAANNNNTTC 1 cut(s) 207
MscI TGGCCA 1 cut(s) 257
MseI TTAA 1 cut(s) 466
MslI CAYNNNNRTG 2 cut(s) 78, 393
Msp20I TGGCCA 1 cut(s) 257
MspI CCGG 1 cut(s) 314
MwoI GCNNNNNNNGC 2 cut(s) 149, 351
NaeI GCCGGC 1 cut(s) 315
NdeI CATATG 1 cut(s) 319
NdeII GATC 1 cut(s) 373
NgoMIV GCCGGC 1 cut(s) 313
NlaIII CATG 2 cut(s) 77, 83
NlaIV GGNNCC 2 cut(s) 190, 312
NmuCI GTSAC 4 cut(s) 30, 157, 395, 418
NspI RCATGY 1 cut(s) 83
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdiI GCCGGC 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 349
PkrI GCNGC 1 cut(s) 331
PspFI CCCAGC 1 cut(s) 25
PspN4I GGNNCC 2 cut(s) 190, 312
PspPI GGNCC 1 cut(s) 188
RseI CAYNNNNRTG 2 cut(s) 78, 393
SaqAI TTAA 1 cut(s) 466
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 1 cut(s) 373
Sau96I GGNCC 1 cut(s) 188
SetI ASST 9 cut(s) 27, 52, 164, 183, 223, 249, 278, 331, 347
SfaNI GCATC 2 cut(s) 397, 459
SinI GGWCC 1 cut(s) 188
SmiMI CAYNNNNRTG 2 cut(s) 78, 393
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 2 cut(s) 263, 364
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 2 cut(s) 188, 424
TaiI ACGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 147, 304
TasI AATT 2 cut(s) 263, 364
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 1 cut(s) 466
Tru9I TTAA 1 cut(s) 466
TseFI GTSAC 4 cut(s) 30, 157, 395, 418
TseI GCWGC 1 cut(s) 329
Tsp45I GTSAC 4 cut(s) 30, 157, 395, 418
TspDTI ATGAA 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 2 cut(s) 263, 364
XceI RCATGY 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.